Cow genome map


           Conread name:
           Utr1-UTR010045E09
        

               Conread position:
               2-567
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 83
               

               Conread position:
               3-549
               

               Cow position:
               
               

               Alignm length:
               558
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 88
               

               Conread position:
               5-225
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               5-394
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               253
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               117, 84
               

               Conread position:
               5-505
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               357, 10
               

               Conread position:
               5-563
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 81
               

               Conread position:
               5-568
               

               Cow position:
               
               

               Alignm length:
               571
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               291, 19
               

               Conread position:
               6-225
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               165
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               6-227
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               168
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               81, 155
               

               Conread position:
               6-253
               

               Cow position:
               
               

               Alignm length:
               249
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 85
               

               Conread position:
               6-276
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               6-330
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 83
               

               Conread position:
               6-361
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               296, 84
               

               Conread position:
               6-427
               

               Cow position:
               
               

               Alignm length:
               425
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               296, 84
               

               Conread position:
               6-538
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 84
               

               Conread position:
               6-549
               

               Cow position:
               
               

               Alignm length:
               554
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 25
               

               Conread position:
               6-549
               

               Cow position:
               
               

               Alignm length:
               554
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 84
               

               Conread position:
               6-549
               

               Cow position:
               
               

               Alignm length:
               554
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               296, 84
               

               Conread position:
               6-550
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               296, 84
               

               Conread position:
               6-557
               

               Cow position:
               
               

               Alignm length:
               560
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 82
               

               Conread position:
               6-557
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 85
               

               Conread position:
               6-562
               

               Cow position:
               
               

               Alignm length:
               567
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 84
               

               Conread position:
               6-562
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 83
               

               Conread position:
               6-562
               

               Cow position:
               
               

               Alignm length:
               571
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 83
               

               Conread position:
               6-563
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 84
               

               Conread position:
               6-563
               

               Cow position:
               
               

               Alignm length:
               571
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 81
               

               Conread position:
               6-563
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               298, 90
               

               Conread position:
               6-563
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 89
               

               Conread position:
               6-563
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 84
               

               Conread position:
               6-563
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 89
               

               Conread position:
               6-563
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 84
               

               Conread position:
               6-563
               

               Cow position:
               
               

               Alignm length:
               567
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               300, 22
               

               Conread position:
               6-564
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 84
               

               Conread position:
               6-564
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               296, 84
               

               Conread position:
               6-564
               

               Cow position:
               
               

               Alignm length:
               564
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               366, 85
               

               Conread position:
               6-565
               

               Cow position:
               
               

               Alignm length:
               586
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 236
               

               Conread position:
               6-565
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 127
               

               Conread position:
               6-570
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 39
               

               Conread position:
               7-487
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 17
               

               Conread position:
               7-567
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               447
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 88
               

               Conread position:
               8-551
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 82
               

               Conread position:
               8-563
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               291, 82
               

               Conread position:
               8-563
               

               Cow position:
               
               

               Alignm length:
               567
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 82
               

               Conread position:
               10-374
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 66
               

               Conread position:
               10-414
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               251
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               66, 77
               

               Conread position:
               10-457
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 81
               

               Conread position:
               10-563
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 81
               

               Conread position:
               10-566
               

               Cow position:
               
               

               Alignm length:
               565
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 85
               

               Conread position:
               11-557
               

               Cow position:
               
               

               Alignm length:
               557
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               290, 79
               

               Conread position:
               11-563
               

               Cow position:
               
               

               Alignm length:
               569
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 84
               

               Conread position:
               12-265
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               18-194
               

               Cow position:
               
               

               Alignm length:
               177
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               19-564
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               360
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               281, 32
               

               Conread position:
               20-548
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 72
               

               Conread position:
               21-563
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 9
               

               Conread position:
               33-562
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 57
               

               Conread position:
               47-488
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               317
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               43, 125
               

               Conread position:
               60-523
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               282
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               35, 45
               

               Conread position:
               62-564
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               298, 38
               

               Conread position:
               70-564
               

               Cow position:
               
               

               Alignm length:
               504
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 26
               

               Conread position:
               73-258
               

               Cow position:
               
               

               Alignm length:
               186
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               76-563
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 19
               

               Conread position:
               83-380
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               12, 78
               

               Conread position:
               89-557
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 256
               

               Conread position:
               93-465
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               67, 82
               

               Conread position:
               99-420
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               29, 62
               

               Conread position:
               141-561
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               278
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               85, 56
               

               Conread position:
               152-561
               

               Cow position:
               
               

               Alignm length:
               421
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 114
               

               Conread position:
               171-563
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 82
               

               Conread position:
               200-523
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 42
               

               Conread position:
               221-473
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 125
               

               Conread position:
               222-549
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 123
               

               Conread position:
               231-403
               

               Cow position:
               
               

               Alignm length:
               177
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               20, 25
               

               Conread position:
               231-549
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 122
               

               Conread position:
               232-523
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               125
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               141, 263
               

               Conread position:
               235-563
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 110
               

               Conread position:
               243-485
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               191
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               118, 101
               

               Conread position:
               249-564
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               53, 18
               

               Conread position:
               263-561
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               208
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               19, 5
               

               Conread position:
               280-564
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 78
               

               Conread position:
               289-508
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               13, 56
               

               Conread position:
               367-563
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               402-558
               

               Cow position:
               
               

               Alignm length:
               163
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               27, 0
               
Show alignments to all cow chromosomes.