Cow genome map
| Conread name: | Utr1-UTR010045E09 |
| Conread position: | 2-567 |
| Cow position: | chr18:16533774-16534342 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 83 |
| Conread position: | 3-549 |
| Cow position: | chr18:11275309-11274762 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 88 |
| Conread position: | 5-225 |
| Cow position: | chr18:37585869-37585651 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 5-394 |
| Cow position: | chr18:16863870-16864256 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 117, 84 |
| Conread position: | 5-505 |
| Cow position: | chr18:16393845-16393347 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 10 |
| Conread position: | 5-563 |
| Cow position: | chr18:6869461-6868901 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 81 |
| Conread position: | 5-568 |
| Cow position: | chr18:9186968-9186411 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 19 |
| Conread position: | 6-225 |
| Cow position: | chr18:25349834-25350052 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 6-227 |
| Cow position: | chr18:19540080-19539860 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 81, 155 |
| Conread position: | 6-253 |
| Cow position: | chr18:32651791-32652036 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 85 |
| Conread position: | 6-276 |
| Cow position: | chr18:51660212-51660481 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 6-330 |
| Cow position: | chr18:27986824-27987146 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 83 |
| Conread position: | 6-361 |
| Cow position: | chr18:44621554-44621908 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-427 |
| Cow position: | chr18:16660209-16659802 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-538 |
| Cow position: | chr18:51480635-51481172 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 84 |
| Conread position: | 6-549 |
| Cow position: | chr18:28974103-28973559 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 25 |
| Conread position: | 6-549 |
| Cow position: | chr18:47741813-47742362 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-549 |
| Cow position: | chr18:55089130-55088581 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-550 |
| Cow position: | chr18:54172048-54171519 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-557 |
| Cow position: | chr18:33358663-33359217 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 82 |
| Conread position: | 6-557 |
| Cow position: | chr18:43147129-43146574 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 85 |
| Conread position: | 6-562 |
| Cow position: | chr18:22602282-22602844 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-562 |
| Cow position: | chr18:27838508-27837960 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 83 |
| Conread position: | 6-562 |
| Cow position: | chr18:40478178-40478739 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 83 |
| Conread position: | 6-563 |
| Cow position: | chr18:14415774-14416333 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-563 |
| Cow position: | chr18:16176811-16176260 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 81 |
| Conread position: | 6-563 |
| Cow position: | chr18:32293570-32294116 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 90 |
| Conread position: | 6-563 |
| Cow position: | chr18:33268636-33269183 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 89 |
| Conread position: | 6-563 |
| Cow position: | chr18:36508128-36508690 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-563 |
| Cow position: | chr18:39748377-39748935 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 89 |
| Conread position: | 6-563 |
| Cow position: | chr18:41841030-41840467 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-563 |
| Cow position: | chr18:48221673-48222236 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 22 |
| Conread position: | 6-564 |
| Cow position: | chr18:16078498-16079078 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 84 |
| Conread position: | 6-564 |
| Cow position: | chr18:19352181-19352745 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-564 |
| Cow position: | chr18:37599732-37599184 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 85 |
| Conread position: | 6-565 |
| Cow position: | chr18:1520924-1521505 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 236 |
| Conread position: | 6-565 |
| Cow position: | chr18:51310378-51310943 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 127 |
| Conread position: | 6-570 |
| Cow position: | chr18:33953772-33953209 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 39 |
| Conread position: | 7-487 |
| Cow position: | chr18:54024559-54024078 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 17 |
| Conread position: | 7-567 |
| Cow position: | chr18:23944575-23944011 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 88 |
| Conread position: | 8-551 |
| Cow position: | chr18:33335668-33336208 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 82 |
| Conread position: | 8-563 |
| Cow position: | chr18:23797448-23798005 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 82 |
| Conread position: | 8-563 |
| Cow position: | chr18:37504862-37505421 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 82 |
| Conread position: | 10-374 |
| Cow position: | chr18:17992762-17992401 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 66 |
| Conread position: | 10-414 |
| Cow position: | chr18:16361424-16361028 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 10-457 |
| Cow position: | chr18:43200864-43201305 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 81 |
| Conread position: | 10-563 |
| Cow position: | chr18:47719767-47719226 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 81 |
| Conread position: | 10-566 |
| Cow position: | chr18:35335288-35335839 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 85 |
| Conread position: | 11-557 |
| Cow position: | chr18:2019883-2019335 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 79 |
| Conread position: | 11-563 |
| Cow position: | chr18:51257783-51258341 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 12-265 |
| Cow position: | chr18:45958495-45958736 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 18-194 |
| Cow position: | chr18:54269277-54269448 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 19-564 |
| Cow position: | chr18:44601351-44601873 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 360 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 281, 32 |
| Conread position: | 20-548 |
| Cow position: | chr18:16877295-16877811 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 72 |
| Conread position: | 21-563 |
| Cow position: | chr18:53785652-53786195 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 9 |
| Conread position: | 33-562 |
| Cow position: | chr18:51689449-51689981 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 57 |
| Conread position: | 47-488 |
| Cow position: | chr18:18897329-18897776 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 317 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 43, 125 |
| Conread position: | 60-523 |
| Cow position: | chr18:15854876-15855335 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 35, 45 |
| Conread position: | 62-564 |
| Cow position: | chr18:29236669-29237168 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 38 |
| Conread position: | 70-564 |
| Cow position: | chr18:2887164-2886663 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 73-258 |
| Cow position: | chr18:22869617-22869801 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 76-563 |
| Cow position: | chr18:54044836-54044365 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 19 |
| Conread position: | 83-380 |
| Cow position: | chr18:35288402-35288709 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 12, 78 |
| Conread position: | 89-557 |
| Cow position: | chr18:51341563-51342038 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 256 |
| Conread position: | 93-465 |
| Cow position: | chr18:20832724-20833096 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 82 |
| Conread position: | 99-420 |
| Cow position: | chr18:29946078-29946392 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 62 |
| Conread position: | 141-561 |
| Cow position: | chr18:5980371-5980785 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 85, 56 |
| Conread position: | 152-561 |
| Cow position: | chr18:14130329-14130741 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 114 |
| Conread position: | 171-563 |
| Cow position: | chr18:52650890-52651277 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 82 |
| Conread position: | 200-523 |
| Cow position: | chr18:114382-114707 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 221-473 |
| Cow position: | chr18:25350673-25350933 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 125 |
| Conread position: | 222-549 |
| Cow position: | chr18:24040723-24040388 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 123 |
| Conread position: | 231-403 |
| Cow position: | chr18:8312281-8312455 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 231-549 |
| Cow position: | chr18:51463056-51462735 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 122 |
| Conread position: | 232-523 |
| Cow position: | chr18:45958740-45959034 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 141, 263 |
| Conread position: | 235-563 |
| Cow position: | chr18:19539557-19539227 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 110 |
| Conread position: | 243-485 |
| Cow position: | chr18:32652251-32652499 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 118, 101 |
| Conread position: | 249-564 |
| Cow position: | chr18:54269622-54269933 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 263-561 |
| Cow position: | chr18:36211067-36210763 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 19, 5 |
| Conread position: | 280-564 |
| Cow position: | chr18:16843268-16842982 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 289-508 |
| Cow position: | chr18:18089396-18089173 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 367-563 |
| Cow position: | chr18:17992264-17992063 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 402-558 |
| Cow position: | chr18:56462712-56462550 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.