Cow genome map

Conread name: Utr1-UTR010045E09

Conread position: 2-567
Cow position: chr18:16533774-16534342 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 83

Conread position: 3-549
Cow position: chr18:11275309-11274762 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 88

Conread position: 5-225
Cow position: chr18:37585869-37585651 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 168
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 84, 0

Conread position: 5-394
Cow position: chr18:16863870-16864256 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 253
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 117, 84

Conread position: 5-505
Cow position: chr18:16393845-16393347 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 10

Conread position: 5-563
Cow position: chr18:6869461-6868901 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 81

Conread position: 5-568
Cow position: chr18:9186968-9186411 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 19

Conread position: 6-225
Cow position: chr18:25349834-25350052 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 84, 0

Conread position: 6-227
Cow position: chr18:19540080-19539860 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 168
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 81, 155

Conread position: 6-253
Cow position: chr18:32651791-32652036 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 85

Conread position: 6-276
Cow position: chr18:51660212-51660481 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 6-330
Cow position: chr18:27986824-27987146 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 83

Conread position: 6-361
Cow position: chr18:44621554-44621908 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-427
Cow position: chr18:16660209-16659802 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-538
Cow position: chr18:51480635-51481172 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 84

Conread position: 6-549
Cow position: chr18:28974103-28973559 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 25

Conread position: 6-549
Cow position: chr18:47741813-47742362 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-549
Cow position: chr18:55089130-55088581 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-550
Cow position: chr18:54172048-54171519 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-557
Cow position: chr18:33358663-33359217 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 82

Conread position: 6-557
Cow position: chr18:43147129-43146574 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 85

Conread position: 6-562
Cow position: chr18:22602282-22602844 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-562
Cow position: chr18:27838508-27837960 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 83

Conread position: 6-562
Cow position: chr18:40478178-40478739 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 83

Conread position: 6-563
Cow position: chr18:14415774-14416333 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr18:16176811-16176260 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 81

Conread position: 6-563
Cow position: chr18:32293570-32294116 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 90

Conread position: 6-563
Cow position: chr18:33268636-33269183 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 89

Conread position: 6-563
Cow position: chr18:36508128-36508690 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr18:39748377-39748935 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 89

Conread position: 6-563
Cow position: chr18:41841030-41840467 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr18:48221673-48222236 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 22

Conread position: 6-564
Cow position: chr18:16078498-16079078 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 84

Conread position: 6-564
Cow position: chr18:19352181-19352745 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-564
Cow position: chr18:37599732-37599184 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 85

Conread position: 6-565
Cow position: chr18:1520924-1521505 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 236

Conread position: 6-565
Cow position: chr18:51310378-51310943 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 127

Conread position: 6-570
Cow position: chr18:33953772-33953209 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 39

Conread position: 7-487
Cow position: chr18:54024559-54024078 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 17

Conread position: 7-567
Cow position: chr18:23944575-23944011 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 88

Conread position: 8-551
Cow position: chr18:33335668-33336208 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 82

Conread position: 8-563
Cow position: chr18:23797448-23798005 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 82

Conread position: 8-563
Cow position: chr18:37504862-37505421 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 82

Conread position: 10-374
Cow position: chr18:17992762-17992401 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 66

Conread position: 10-414
Cow position: chr18:16361424-16361028 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 251
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 66, 77

Conread position: 10-457
Cow position: chr18:43200864-43201305 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 81

Conread position: 10-563
Cow position: chr18:47719767-47719226 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 81

Conread position: 10-566
Cow position: chr18:35335288-35335839 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 85

Conread position: 11-557
Cow position: chr18:2019883-2019335 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 79

Conread position: 11-563
Cow position: chr18:51257783-51258341 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 12-265
Cow position: chr18:45958495-45958736 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 78, 0

Conread position: 18-194
Cow position: chr18:54269277-54269448 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 19-564
Cow position: chr18:44601351-44601873 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 360
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 281, 32

Conread position: 20-548
Cow position: chr18:16877295-16877811 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 72

Conread position: 21-563
Cow position: chr18:53785652-53786195 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 9

Conread position: 33-562
Cow position: chr18:51689449-51689981 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 57

Conread position: 47-488
Cow position: chr18:18897329-18897776 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 317
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 43, 125

Conread position: 60-523
Cow position: chr18:15854876-15855335 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 282
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 35, 45

Conread position: 62-564
Cow position: chr18:29236669-29237168 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 38

Conread position: 70-564
Cow position: chr18:2887164-2886663 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 26

Conread position: 73-258
Cow position: chr18:22869617-22869801 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 17, 0

Conread position: 76-563
Cow position: chr18:54044836-54044365 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 19

Conread position: 83-380
Cow position: chr18:35288402-35288709 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 216
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 12, 78

Conread position: 89-557
Cow position: chr18:51341563-51342038 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 256

Conread position: 93-465
Cow position: chr18:20832724-20833096 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 241
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 67, 82

Conread position: 99-420
Cow position: chr18:29946078-29946392 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 220
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 62

Conread position: 141-561
Cow position: chr18:5980371-5980785 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 278
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 85, 56

Conread position: 152-561
Cow position: chr18:14130329-14130741 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 114

Conread position: 171-563
Cow position: chr18:52650890-52651277 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 82

Conread position: 200-523
Cow position: chr18:114382-114707 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 42

Conread position: 221-473
Cow position: chr18:25350673-25350933 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 125

Conread position: 222-549
Cow position: chr18:24040723-24040388 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 123

Conread position: 231-403
Cow position: chr18:8312281-8312455 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 20, 25

Conread position: 231-549
Cow position: chr18:51463056-51462735 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 122

Conread position: 232-523
Cow position: chr18:45958740-45959034 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 125
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 141, 263

Conread position: 235-563
Cow position: chr18:19539557-19539227 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 110

Conread position: 243-485
Cow position: chr18:32652251-32652499 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 118, 101

Conread position: 249-564
Cow position: chr18:54269622-54269933 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 53, 18

Conread position: 263-561
Cow position: chr18:36211067-36210763 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 208
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 19, 5

Conread position: 280-564
Cow position: chr18:16843268-16842982 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 78

Conread position: 289-508
Cow position: chr18:18089396-18089173 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 13, 56

Conread position: 367-563
Cow position: chr18:17992264-17992063 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 6, 0

Conread position: 402-558
Cow position: chr18:56462712-56462550 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 0

Show alignments to all cow chromosomes.