Cow genome map
| Conread name: | Utr1-UTR010045E09 |
| Conread position: | 1-558 |
| Cow position: | chr19:15953655-15954194 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 84 |
| Conread position: | 2-563 |
| Cow position: | chr19:416448-417022 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 93 |
| Conread position: | 4-221 |
| Cow position: | chr19:35376354-35376572 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 15, 74 |
| Conread position: | 5-409 |
| Cow position: | chr19:20125421-20125808 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 27 |
| Conread position: | 5-427 |
| Cow position: | chr19:34222-34636 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 5-427 |
| Cow position: | chr19:30372081-30372494 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 79 |
| Conread position: | 5-469 |
| Cow position: | chr19:261236-261710 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 38 |
| Conread position: | 5-519 |
| Cow position: | chr19:32244478-32245002 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 351 |
| Conread position: | 5-539 |
| Cow position: | chr19:40887850-40887317 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 89 |
| Conread position: | 5-561 |
| Cow position: | chr19:32202556-32203099 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 365 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 296, 85 |
| Conread position: | 6-167 |
| Cow position: | chr19:32238065-32237898 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 6-225 |
| Cow position: | chr19:685643-685860 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 177, 83 |
| Conread position: | 6-284 |
| Cow position: | chr19:4252558-4252285 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 6-336 |
| Cow position: | chr19:4532942-4532625 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 25 |
| Conread position: | 6-339 |
| Cow position: | chr19:32193375-32193711 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 85 |
| Conread position: | 6-361 |
| Cow position: | chr19:29209366-29209712 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 52 |
| Conread position: | 6-377 |
| Cow position: | chr19:548195-548536 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 165, 17 |
| Conread position: | 6-424 |
| Cow position: | chr19:55078545-55078963 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-427 |
| Cow position: | chr19:35979068-35979485 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 85 |
| Conread position: | 6-464 |
| Cow position: | chr19:31341519-31341984 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 18 |
| Conread position: | 6-521 |
| Cow position: | chr19:39688344-39688847 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 17 |
| Conread position: | 6-538 |
| Cow position: | chr19:439847-439320 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 341 |
| Conread position: | 6-548 |
| Cow position: | chr19:893803-893268 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 14 |
| Conread position: | 6-549 |
| Cow position: | chr19:37699-38243 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 82 |
| Conread position: | 6-549 |
| Cow position: | chr19:170941-170399 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 96 |
| Conread position: | 6-549 |
| Cow position: | chr19:32212268-32211725 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 84 |
| Conread position: | 6-557 |
| Cow position: | chr19:76434-75913 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 43 |
| Conread position: | 6-562 |
| Cow position: | chr19:40852631-40852077 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 83 |
| Conread position: | 6-563 |
| Cow position: | chr19:4385284-4385831 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-563 |
| Cow position: | chr19:7488112-7488675 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-563 |
| Cow position: | chr19:10672507-10671945 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-563 |
| Cow position: | chr19:33941411-33941972 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 90 |
| Conread position: | 6-563 |
| Cow position: | chr19:39390321-39390870 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 52 |
| Conread position: | 6-564 |
| Cow position: | chr19:32223629-32223086 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 83 |
| Conread position: | 6-566 |
| Cow position: | chr19:172010-172577 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 7-565 |
| Cow position: | chr19:32665333-32665891 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 90 |
| Conread position: | 8-411 |
| Cow position: | chr19:5865037-5864635 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 111, 32 |
| Conread position: | 10-307 |
| Cow position: | chr19:1031912-1032200 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 236, 86 |
| Conread position: | 10-513 |
| Cow position: | chr19:20111417-20110944 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 325 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 413, 85 |
| Conread position: | 10-549 |
| Cow position: | chr19:7341876-7342416 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 65 |
| Conread position: | 10-549 |
| Cow position: | chr19:43143522-43144064 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 80 |
| Conread position: | 10-562 |
| Cow position: | chr19:378068-377552 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 9 |
| Conread position: | 10-563 |
| Cow position: | chr19:203767-204323 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 80 |
| Conread position: | 10-563 |
| Cow position: | chr19:39546431-39546973 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 85 |
| Conread position: | 15-225 |
| Cow position: | chr19:52152453-52152244 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 15-549 |
| Cow position: | chr19:28593084-28593611 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 76 |
| Conread position: | 15-562 |
| Cow position: | chr19:30754985-30755530 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 224 |
| Conread position: | 20-559 |
| Cow position: | chr19:15041977-15042514 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 355 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 27-354 |
| Cow position: | chr19:27052943-27052623 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 72 |
| Conread position: | 31-563 |
| Cow position: | chr19:28581830-28581299 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 39 |
| Conread position: | 35-564 |
| Cow position: | chr19:772428-772964 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 24 |
| Conread position: | 36-427 |
| Cow position: | chr19:359673-359289 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 37 |
| Conread position: | 42-312 |
| Cow position: | chr19:561670-561403 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 43-423 |
| Cow position: | chr19:543791-543410 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 45 |
| Conread position: | 46-333 |
| Cow position: | chr19:28376370-28376644 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 46-488 |
| Cow position: | chr19:42299657-42299209 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 49 |
| Conread position: | 61-564 |
| Cow position: | chr19:42248669-42249166 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 29 |
| Conread position: | 81-323 |
| Cow position: | chr19:44759730-44759973 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 14, 76 |
| Conread position: | 84-563 |
| Cow position: | chr19:33873304-33873788 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 6 |
| Conread position: | 104-516 |
| Cow position: | chr19:350387-349976 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 197 |
| Conread position: | 113-425 |
| Cow position: | chr19:32785706-32785394 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 181, 218 |
| Conread position: | 116-427 |
| Cow position: | chr19:27212091-27212398 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 180, 158 |
| Conread position: | 116-556 |
| Cow position: | chr19:6553521-6553955 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 82 |
| Conread position: | 141-371 |
| Cow position: | chr19:18728790-18729015 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 225, 73 |
| Conread position: | 152-449 |
| Cow position: | chr19:32237736-32237440 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 46 |
| Conread position: | 204-549 |
| Cow position: | chr19:687061-687411 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 28 |
| Conread position: | 231-548 |
| Cow position: | chr19:20104736-20105060 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 23 |
| Conread position: | 231-549 |
| Cow position: | chr19:52151808-52151482 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 125 |
| Conread position: | 244-536 |
| Cow position: | chr19:2274338-2274043 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 268-564 |
| Cow position: | chr19:352933-352628 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 34, 84 |
| Conread position: | 271-561 |
| Cow position: | chr19:7449960-7449669 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 74 |
| Conread position: | 271-562 |
| Cow position: | chr19:1032140-1032436 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 57 |
| Conread position: | 271-563 |
| Cow position: | chr19:35376850-35377143 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 314-557 |
| Cow position: | chr19:42649005-42648758 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 363-567 |
| Cow position: | chr19:28376641-28376852 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 10, 43 |
| Conread position: | 371-567 |
| Cow position: | chr19:29209765-29209963 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 377-563 |
| Cow position: | chr19:5729000-5729191 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 379-567 |
| Cow position: | chr19:40817529-40817335 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 443-562 |
| Cow position: | chr19:5208413-5208533 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
Show alignments to all cow chromosomes.