Cow genome map
| Conread name: | Utr1-UTR010045E09 |
| Conread position: | 2-563 |
| Cow position: | chr20:3252381-3251816 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 93 |
| Conread position: | 5-533 |
| Cow position: | chr20:15098114-15097588 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 9 |
| Conread position: | 5-563 |
| Cow position: | chr20:31379126-31378569 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 14 |
| Conread position: | 6-110 |
| Cow position: | chr20:8004757-8004653 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 84 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-161 |
| Cow position: | chr20:11276537-11276386 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 60, 85 |
| Conread position: | 6-162 |
| Cow position: | chr20:3032694-3032840 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 6-241 |
| Cow position: | chr20:35119081-35119314 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 6-286 |
| Cow position: | chr20:19192372-19192093 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 6-317 |
| Cow position: | chr20:10846322-10846010 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 79 |
| Conread position: | 6-350 |
| Cow position: | chr20:4799889-4799551 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 84 |
| Conread position: | 6-380 |
| Cow position: | chr20:21393329-21393696 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 86 |
| Conread position: | 6-548 |
| Cow position: | chr20:21914082-21914631 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-549 |
| Cow position: | chr20:7116714-7116164 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 84 |
| Conread position: | 6-549 |
| Cow position: | chr20:13762662-13763209 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-549 |
| Cow position: | chr20:19437714-19438245 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 96 |
| Conread position: | 6-550 |
| Cow position: | chr20:3270479-3271010 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 17 |
| Conread position: | 6-556 |
| Cow position: | chr20:18315824-18315295 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 80 |
| Conread position: | 6-557 |
| Cow position: | chr20:8313677-8313127 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 93 |
| Conread position: | 6-557 |
| Cow position: | chr20:23469904-23469353 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 85 |
| Conread position: | 6-557 |
| Cow position: | chr20:24614306-24614848 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 89 |
| Conread position: | 6-562 |
| Cow position: | chr20:5560959-5560397 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-562 |
| Cow position: | chr20:28565844-28565278 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 342 |
| Conread position: | 6-563 |
| Cow position: | chr20:5534698-5535256 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-563 |
| Cow position: | chr20:12439005-12438442 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-563 |
| Cow position: | chr20:22206299-22206855 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 88 |
| Conread position: | 6-563 |
| Cow position: | chr20:23798638-23799204 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-563 |
| Cow position: | chr20:25851234-25850672 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 84 |
| Conread position: | 6-563 |
| Cow position: | chr20:27868953-27869516 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-563 |
| Cow position: | chr20:28160537-28161089 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 83 |
| Conread position: | 6-563 |
| Cow position: | chr20:30684095-30684639 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-567 |
| Cow position: | chr20:5483948-5484513 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 13 |
| Conread position: | 7-563 |
| Cow position: | chr20:15064526-15065084 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 83 |
| Conread position: | 8-348 |
| Cow position: | chr20:10102788-10102461 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 83 |
| Conread position: | 10-356 |
| Cow position: | chr20:29572423-29572088 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 185, 86 |
| Conread position: | 10-462 |
| Cow position: | chr20:37579218-37579656 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 301 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 82, 166 |
| Conread position: | 11-280 |
| Cow position: | chr20:28593505-28593776 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 44 |
| Conread position: | 11-359 |
| Cow position: | chr20:22717925-22717586 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 8 |
| Conread position: | 11-549 |
| Cow position: | chr20:822511-823072 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 350 |
| Conread position: | 11-564 |
| Cow position: | chr20:9954208-9953670 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 8 |
| Conread position: | 12-315 |
| Cow position: | chr20:20755669-20755364 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 60, 92 |
| Conread position: | 15-348 |
| Cow position: | chr20:35973647-35973311 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 115, 69 |
| Conread position: | 15-422 |
| Cow position: | chr20:11679345-11678938 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 75 |
| Conread position: | 15-564 |
| Cow position: | chr20:20905418-20904893 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 372 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 147, 25 |
| Conread position: | 32-539 |
| Cow position: | chr20:13665408-13664921 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 27 |
| Conread position: | 41-563 |
| Cow position: | chr20:35119365-35119888 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 49 |
| Conread position: | 44-420 |
| Cow position: | chr20:2791548-2791181 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 318, 51 |
| Conread position: | 45-281 |
| Cow position: | chr20:24390168-24390394 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 144, 155 |
| Conread position: | 48-425 |
| Cow position: | chr20:7085774-7085407 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 247, 42 |
| Conread position: | 60-410 |
| Cow position: | chr20:24516846-24517193 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 236, 52 |
| Conread position: | 76-540 |
| Cow position: | chr20:8835805-8835342 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 84-563 |
| Cow position: | chr20:8004392-8003907 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 261 |
| Conread position: | 89-563 |
| Cow position: | chr20:15291856-15292329 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 86 |
| Conread position: | 126-560 |
| Cow position: | chr20:15947518-15947064 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 337 |
| Conread position: | 143-567 |
| Cow position: | chr20:25960995-25961426 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 202 |
| Conread position: | 154-566 |
| Cow position: | chr20:13680154-13679736 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 103 |
| Conread position: | 156-557 |
| Cow position: | chr20:3032969-3033374 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 42 |
| Conread position: | 200-545 |
| Cow position: | chr20:29948448-29948800 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 145 |
| Conread position: | 212-564 |
| Cow position: | chr20:3684524-3684168 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 133 |
| Conread position: | 320-564 |
| Cow position: | chr20:35104562-35104310 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 390-549 |
| Cow position: | chr20:10845980-10845817 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 432-562 |
| Cow position: | chr20:19495170-19495301 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
Show alignments to all cow chromosomes.