Cow genome map
| Conread name: | Utr1-UTR010045E09 |
| Conread position: | 2-563 |
| Cow position: | chr21:13124123-13123568 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 17 |
| Conread position: | 5-190 |
| Cow position: | chr21:40271943-40271762 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 5-240 |
| Cow position: | chr21:27628-27851 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 5-361 |
| Cow position: | chr21:26819140-26818792 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 85 |
| Conread position: | 5-481 |
| Cow position: | chr21:4222813-4222337 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 90 |
| Conread position: | 5-563 |
| Cow position: | chr21:10566552-10567106 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 85 |
| Conread position: | 5-567 |
| Cow position: | chr21:46915462-46916030 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 5 |
| Conread position: | 6-228 |
| Cow position: | chr21:2501813-2502023 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 6-264 |
| Cow position: | chr21:17572799-17573053 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 6-331 |
| Cow position: | chr21:27708637-27708963 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 84 |
| Conread position: | 6-372 |
| Cow position: | chr21:3615169-3615535 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 39 |
| Conread position: | 6-394 |
| Cow position: | chr21:33251267-33251657 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-402 |
| Cow position: | chr21:34259337-34258957 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 81 |
| Conread position: | 6-503 |
| Cow position: | chr21:47939354-47939849 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 117 |
| Conread position: | 6-536 |
| Cow position: | chr21:10849955-10850490 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 90 |
| Conread position: | 6-539 |
| Cow position: | chr21:2541540-2540999 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 89 |
| Conread position: | 6-548 |
| Cow position: | chr21:12056122-12055578 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-549 |
| Cow position: | chr21:11453778-11453232 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-549 |
| Cow position: | chr21:26638588-26638041 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-549 |
| Cow position: | chr21:39424938-39425487 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 84 |
| Conread position: | 6-562 |
| Cow position: | chr21:358891-359470 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 174 |
| Conread position: | 6-562 |
| Cow position: | chr21:2510530-2511088 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 84 |
| Conread position: | 6-562 |
| Cow position: | chr21:4183413-4183951 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 83 |
| Conread position: | 6-563 |
| Cow position: | chr21:145795-146360 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 78 |
| Conread position: | 6-563 |
| Cow position: | chr21:2416115-2416656 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 20 |
| Conread position: | 6-563 |
| Cow position: | chr21:2530250-2529690 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 9 |
| Conread position: | 6-563 |
| Cow position: | chr21:2883859-2883311 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-563 |
| Cow position: | chr21:3778643-3779204 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 84 |
| Conread position: | 6-563 |
| Cow position: | chr21:9891486-9892036 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 89 |
| Conread position: | 6-563 |
| Cow position: | chr21:30561677-30562240 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 84 |
| Conread position: | 6-563 |
| Cow position: | chr21:34292894-34293453 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 89 |
| Conread position: | 6-566 |
| Cow position: | chr21:2674762-2674172 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 183 |
| Conread position: | 6-567 |
| Cow position: | chr21:2476635-2476099 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 83 |
| Conread position: | 6-567 |
| Cow position: | chr21:4076723-4077281 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 101 |
| Conread position: | 6-567 |
| Cow position: | chr21:4090526-4091091 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 84 |
| Conread position: | 6-567 |
| Cow position: | chr21:7267661-7267094 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 7-549 |
| Cow position: | chr21:11505463-11506020 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 95 |
| Conread position: | 7-563 |
| Cow position: | chr21:31559779-31559218 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 82 |
| Conread position: | 8-563 |
| Cow position: | chr21:48115985-48116539 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 82 |
| Conread position: | 9-411 |
| Cow position: | chr21:2769584-2769179 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 87 |
| Conread position: | 9-563 |
| Cow position: | chr21:30600037-30599488 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 81 |
| Conread position: | 10-302 |
| Cow position: | chr21:1190921-1191218 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 80 |
| Conread position: | 10-380 |
| Cow position: | chr21:2716799-2716431 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 38 |
| Conread position: | 10-427 |
| Cow position: | chr21:21031619-21032023 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 215, 57 |
| Conread position: | 10-508 |
| Cow position: | chr21:3426366-3426868 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 87 |
| Conread position: | 10-522 |
| Cow position: | chr21:47947986-47948505 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 82 |
| Conread position: | 10-563 |
| Cow position: | chr21:1292293-1291753 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 89 |
| Conread position: | 10-563 |
| Cow position: | chr21:35596251-35596804 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 9 |
| Conread position: | 11-461 |
| Cow position: | chr21:33755180-33755636 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 34 |
| Conread position: | 11-514 |
| Cow position: | chr21:25992739-25992229 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 341 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 15-332 |
| Cow position: | chr21:21517087-21517391 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 292, 76 |
| Conread position: | 18-563 |
| Cow position: | chr21:23860670-23861216 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 77 |
| Conread position: | 23-548 |
| Cow position: | chr21:37044805-37045333 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 67 |
| Conread position: | 25-548 |
| Cow position: | chr21:20744855-20744346 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 64 |
| Conread position: | 25-563 |
| Cow position: | chr21:36714527-36715066 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 52 |
| Conread position: | 29-509 |
| Cow position: | chr21:21947903-21947424 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 320 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 66, 74 |
| Conread position: | 30-563 |
| Cow position: | chr21:4456729-4457264 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 19 |
| Conread position: | 51-550 |
| Cow position: | chr21:2789071-2788568 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 45 |
| Conread position: | 89-518 |
| Cow position: | chr21:21914242-21914677 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 254 |
| Conread position: | 92-548 |
| Cow position: | chr21:4590030-4589568 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 106 |
| Conread position: | 94-564 |
| Cow position: | chr21:23811838-23812312 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 226 |
| Conread position: | 117-563 |
| Cow position: | chr21:27282372-27282823 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 237 |
| Conread position: | 126-505 |
| Cow position: | chr21:3194390-3194759 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 128-469 |
| Cow position: | chr21:8678364-8678017 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 217 |
| Conread position: | 128-549 |
| Cow position: | chr21:6339562-6339990 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 217 |
| Conread position: | 181-563 |
| Cow position: | chr21:40271628-40271238 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 164 |
| Conread position: | 206-563 |
| Cow position: | chr21:3798295-3797933 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 235-557 |
| Cow position: | chr21:18820313-18819998 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 26 |
| Conread position: | 253-563 |
| Cow position: | chr21:2502015-2502330 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 259-563 |
| Cow position: | chr21:1191291-1191601 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 310-562 |
| Cow position: | chr21:26650220-26650478 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 331-563 |
| Cow position: | chr21:35143968-35144194 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 371-558 |
| Cow position: | chr21:30226261-30226452 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 43 |
| Conread position: | 372-562 |
| Cow position: | chr21:9869994-9870183 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 386-564 |
| Cow position: | chr21:3615569-3615750 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 430-557 |
| Cow position: | chr21:2716414-2716286 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.