Cow genome map

Conread name: Utr1-UTR010045E09

Conread position: 4-229
Cow position: chr28:5796565-5796784 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 11, 87

Conread position: 4-558
Cow position: chr28:10619355-10618810 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 16

Conread position: 5-286
Cow position: chr28:22827799-22828073 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 197
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 86, 0

Conread position: 5-300
Cow position: chr28:17330774-17330487 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 68

Conread position: 5-549
Cow position: chr28:7822000-7822553 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 405

Conread position: 5-563
Cow position: chr28:8378313-8378878 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 85

Conread position: 6-193
Cow position: chr28:13522474-13522660 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 81, 0

Conread position: 6-253
Cow position: chr28:1168417-1168174 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 6-253
Cow position: chr28:34593590-34593832 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 6-296
Cow position: chr28:29819317-29819604 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 6-420
Cow position: chr28:26426525-26426117 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 70

Conread position: 6-422
Cow position: chr28:15950728-15951142 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-427
Cow position: chr28:7816981-7817371 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 38

Conread position: 6-518
Cow position: chr28:15920719-15920200 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 84

Conread position: 6-534
Cow position: chr28:5565608-5566134 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 84

Conread position: 6-536
Cow position: chr28:782145-782677 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-536
Cow position: chr28:17667765-17667231 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-548
Cow position: chr28:24587180-24587729 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 84

Conread position: 6-549
Cow position: chr28:14750295-14750842 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-551
Cow position: chr28:8721695-8721152 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 84

Conread position: 6-562
Cow position: chr28:1815120-1814559 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 70

Conread position: 6-562
Cow position: chr28:13459718-13460278 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr28:1387643-1387091 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 44

Conread position: 6-563
Cow position: chr28:2591668-2592224 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 13

Conread position: 6-563
Cow position: chr28:7001735-7002299 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-563
Cow position: chr28:9953882-9954442 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 166

Conread position: 6-563
Cow position: chr28:10582238-10581675 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr28:12150069-12150613 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-563
Cow position: chr28:14705924-14705362 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 78

Conread position: 6-563
Cow position: chr28:17388228-17388791 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr28:32792632-32792071 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 84

Conread position: 6-564
Cow position: chr28:5812456-5812999 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 88

Conread position: 6-564
Cow position: chr28:21358767-21359312 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 84

Conread position: 6-566
Cow position: chr28:2083351-2083908 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-566
Cow position: chr28:18520714-18520145 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 84

Conread position: 6-567
Cow position: chr28:9155537-9154970 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 45

Conread position: 6-567
Cow position: chr28:13441130-13440563 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 7-306
Cow position: chr28:15681641-15681933 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 7-553
Cow position: chr28:7901103-7901661 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 12

Conread position: 10-370
Cow position: chr28:9262898-9263242 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 236
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 146, 66

Conread position: 10-380
Cow position: chr28:10591617-10591264 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 241
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 335, 14

Conread position: 10-558
Cow position: chr28:21325540-21326088 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 103

Conread position: 10-563
Cow position: chr28:4381067-4380535 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 82

Conread position: 10-567
Cow position: chr28:22261400-22260836 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 80

Conread position: 12-193
Cow position: chr28:18089248-18089071 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 12-194
Cow position: chr28:2846740-2846565 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 77, 0

Conread position: 12-331
Cow position: chr28:32331648-32331335 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 213
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 284, 86

Conread position: 12-549
Cow position: chr28:6780575-6780038 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 11

Conread position: 15-497
Cow position: chr28:18102170-18101700 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 317
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 346, 76

Conread position: 15-549
Cow position: chr28:1952890-1953425 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 30

Conread position: 15-557
Cow position: chr28:34648693-34649247 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 114

Conread position: 30-339
Cow position: chr28:24652062-24652360 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 31-252
Cow position: chr28:5752105-5751884 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 59

Conread position: 31-537
Cow position: chr28:1504627-1505135 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 59

Conread position: 31-562
Cow position: chr28:15378220-15377684 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 65

Conread position: 31-563
Cow position: chr28:3193019-3192482 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 59

Conread position: 32-266
Cow position: chr28:2989909-2989683 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 63, 0

Conread position: 53-564
Cow position: chr28:10871266-10871777 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 214
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 247, 268

Conread position: 58-563
Cow position: chr28:24667380-24667888 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 37

Conread position: 61-194
Cow position: chr28:12648937-12648805 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 70-563
Cow position: chr28:33252131-33252621 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 20

Conread position: 74-562
Cow position: chr28:12410395-12409917 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 16

Conread position: 83-549
Cow position: chr28:5114976-5114516 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 7

Conread position: 90-468
Cow position: chr28:24306834-24306453 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 243
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 92, 99

Conread position: 105-562
Cow position: chr28:7740340-7740789 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 26

Conread position: 113-561
Cow position: chr28:7790445-7789977 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 250

Conread position: 116-287
Cow position: chr28:15035640-15035470 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 38, 83

Conread position: 141-566
Cow position: chr28:9137168-9136740 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 59

Conread position: 155-349
Cow position: chr28:22233794-22233600 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 158-566
Cow position: chr28:2724993-2724579 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 187

Conread position: 232-552
Cow position: chr28:22065765-22065445 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 219
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 130, 62

Conread position: 236-563
Cow position: chr28:5751730-5751396 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 5

Conread position: 243-563
Cow position: chr28:1167899-1167572 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 89

Conread position: 243-563
Cow position: chr28:34593961-34594288 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 109

Conread position: 254-563
Cow position: chr28:29819726-29820043 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 99

Conread position: 291-559
Cow position: chr28:2846142-2845869 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 200
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 11, 61

Conread position: 297-562
Cow position: chr28:2989678-2989398 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 66, 11

Conread position: 297-564
Cow position: chr28:1931947-1931672 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 202
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 67, 54

Conread position: 297-568
Cow position: chr28:5797470-5797746 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 54

Conread position: 310-562
Cow position: chr28:17324300-17324036 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 188
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 44

Conread position: 349-521
Cow position: chr28:22828104-22828283 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 12, 57

Conread position: 363-549
Cow position: chr28:22233293-22233104 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 12, 52

Conread position: 363-564
Cow position: chr28:10071089-10071290 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 161
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 10, 51

Conread position: 382-567
Cow position: chr28:13490275-13490466 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 47, 32

Conread position: 393-562
Cow position: chr28:30805552-30805379 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 33, 12

Conread position: 395-549
Cow position: chr28:6539124-6538966 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 10

Conread position: 432-565
Cow position: chr28:24652939-24652805 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 0

Show alignments to all cow chromosomes.