Cow genome map

Conread name: Utr1-UTR010045E09

Conread position: 4-549
Cow position: chr29:7840507-7841057 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 92

Conread position: 4-564
Cow position: chr29:30811244-30811798 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 88

Conread position: 5-225
Cow position: chr29:13578129-13578349 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 128, 84

Conread position: 5-358
Cow position: chr29:2368184-2367845 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 235
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 345, 15

Conread position: 5-422
Cow position: chr29:15969436-15969023 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 85

Conread position: 5-521
Cow position: chr29:1714962-1715474 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 90

Conread position: 5-548
Cow position: chr29:15895136-15894590 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 85

Conread position: 5-562
Cow position: chr29:20250871-20251433 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 85

Conread position: 5-563
Cow position: chr29:21543664-21543094 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 100

Conread position: 6-174
Cow position: chr29:9644008-9643844 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 84, 0

Conread position: 6-265
Cow position: chr29:12796751-12796503 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 6-273
Cow position: chr29:31121521-31121784 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 6-388
Cow position: chr29:21427342-21426962 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 82

Conread position: 6-396
Cow position: chr29:21246281-21246674 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 89

Conread position: 6-402
Cow position: chr29:39313877-39313481 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 255
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 142, 89

Conread position: 6-403
Cow position: chr29:28060953-28060553 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 83

Conread position: 6-410
Cow position: chr29:13853307-13852905 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 52

Conread position: 6-469
Cow position: chr29:16109442-16109908 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 84

Conread position: 6-488
Cow position: chr29:32315753-32316241 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 90

Conread position: 6-528
Cow position: chr29:10848403-10847852 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 42

Conread position: 6-537
Cow position: chr29:38226707-38227229 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 64

Conread position: 6-547
Cow position: chr29:15950466-15949932 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 62

Conread position: 6-549
Cow position: chr29:610898-610351 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-549
Cow position: chr29:35296591-35297135 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 53

Conread position: 6-549
Cow position: chr29:39079993-39079451 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 84

Conread position: 6-558
Cow position: chr29:104292-104834 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 69

Conread position: 6-562
Cow position: chr29:48763-48206 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 83

Conread position: 6-562
Cow position: chr29:7431503-7430945 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-562
Cow position: chr29:34800093-34799533 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 39

Conread position: 6-563
Cow position: chr29:2099557-2100120 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr29:2689618-2690175 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 84

Conread position: 6-563
Cow position: chr29:2841652-2841098 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 84

Conread position: 6-563
Cow position: chr29:5957316-5957879 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 82

Conread position: 6-563
Cow position: chr29:6266779-6266226 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 29

Conread position: 6-563
Cow position: chr29:10648532-10647976 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr29:11048996-11049553 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 20

Conread position: 6-563
Cow position: chr29:19623531-19622972 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr29:19652821-19653383 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 83

Conread position: 6-563
Cow position: chr29:23975545-23976115 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 83

Conread position: 6-563
Cow position: chr29:25932831-25932269 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-563
Cow position: chr29:26165109-26164547 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-563
Cow position: chr29:27041047-27040497 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 89

Conread position: 6-563
Cow position: chr29:32539523-32540085 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr29:43366283-43365727 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 17

Conread position: 6-564
Cow position: chr29:2750670-2750145 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 21

Conread position: 6-566
Cow position: chr29:16769845-16770400 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 84

Conread position: 6-566
Cow position: chr29:40503266-40502704 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-566
Cow position: chr29:43322272-43322834 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 89

Conread position: 6-566
Cow position: chr29:45459432-45459993 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-567
Cow position: chr29:27250622-27250063 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 8-427
Cow position: chr29:32220440-32220855 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 259
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 64, 57

Conread position: 8-540
Cow position: chr29:14073221-14072695 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 16

Conread position: 9-167
Cow position: chr29:2468224-2468057 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 9-563
Cow position: chr29:10824243-10823694 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 283

Conread position: 9-563
Cow position: chr29:35196392-35196939 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 87

Conread position: 10-301
Cow position: chr29:32640505-32640785 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 195
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 208, 41

Conread position: 12-380
Cow position: chr29:31180842-31181212 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 78

Conread position: 26-167
Cow position: chr29:42650059-42650196 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 26-167
Cow position: chr29:42801919-42802056 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 33-468
Cow position: chr29:32948885-32949323 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 277
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 19, 27

Conread position: 33-540
Cow position: chr29:17662661-17663156 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 240

Conread position: 34-563
Cow position: chr29:16022272-16022805 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 56

Conread position: 43-557
Cow position: chr29:19884819-19885339 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 13

Conread position: 48-406
Cow position: chr29:11855354-11855709 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 245
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 240, 47

Conread position: 52-410
Cow position: chr29:4635207-4634857 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 248
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 69, 43

Conread position: 56-437
Cow position: chr29:35283512-35283881 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 246
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 192, 81

Conread position: 58-414
Cow position: chr29:24198855-24198500 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 242
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 63, 29

Conread position: 91-549
Cow position: chr29:27981123-27980658 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 256

Conread position: 107-531
Cow position: chr29:11841476-11841901 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 292
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 11, 56

Conread position: 141-378
Cow position: chr29:5983333-5983094 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 55

Conread position: 144-316
Cow position: chr29:43791030-43791202 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 137
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 144-563
Cow position: chr29:14585777-14586197 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 202

Conread position: 155-476
Cow position: chr29:13648278-13648584 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 221
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 207, 112

Conread position: 162-549
Cow position: chr29:670189-669796 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 183

Conread position: 162-563
Cow position: chr29:45587478-45587085 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 129

Conread position: 200-549
Cow position: chr29:18857039-18856683 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 145

Conread position: 209-536
Cow position: chr29:42650199-42650534 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 136

Conread position: 209-536
Cow position: chr29:42802059-42802394 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 136

Conread position: 217-563
Cow position: chr29:2466414-2466059 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 126

Conread position: 221-549
Cow position: chr29:13581998-13582329 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 131

Conread position: 222-485
Cow position: chr29:12796436-12796168 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 24, 59

Conread position: 230-564
Cow position: chr29:803416-803080 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 240
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 72, 24

Conread position: 233-566
Cow position: chr29:9643820-9643478 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 119

Conread position: 272-563
Cow position: chr29:410548-410250 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 80

Conread position: 325-567
Cow position: chr29:34925505-34925758 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 189
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 38, 26

Conread position: 371-549
Cow position: chr29:31181495-31181676 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 24

Conread position: 384-563
Cow position: chr29:21426932-21426755 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 32, 123

Conread position: 416-564
Cow position: chr29:5983082-5982931 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 432-549
Cow position: chr29:15968718-15968600 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 0

Show alignments to all cow chromosomes.