Cow genome map

Conread name: Utr1-UTR010045E09

Conread position: 4-508
Cow position: chr4:4905587-4906089 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 86

Conread position: 5-272
Cow position: chr4:23114742-23114476 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 5-340
Cow position: chr4:51044452-51044129 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 240
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 52, 96

Conread position: 5-468
Cow position: chr4:496503-496056 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 312
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 355, 83

Conread position: 5-549
Cow position: chr4:25600175-25599635 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 14

Conread position: 5-567
Cow position: chr4:13547462-13548031 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 85

Conread position: 6-110
Cow position: chr4:33073949-33073845 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 94, 83

Conread position: 6-137
Cow position: chr4:46712906-46712776 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 83, 0

Conread position: 6-221
Cow position: chr4:27442524-27442739 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 6-273
Cow position: chr4:10408213-10408482 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 92

Conread position: 6-339
Cow position: chr4:1050185-1049856 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 84

Conread position: 6-380
Cow position: chr4:31668751-31669121 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 78

Conread position: 6-424
Cow position: chr4:33493246-33493661 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 85

Conread position: 6-469
Cow position: chr4:29532279-29531812 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-516
Cow position: chr4:1464485-1463974 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 86

Conread position: 6-517
Cow position: chr4:39272503-39271985 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 23

Conread position: 6-532
Cow position: chr4:528428-528960 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-536
Cow position: chr4:3961030-3961562 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 84

Conread position: 6-548
Cow position: chr4:28830474-28831012 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 34

Conread position: 6-549
Cow position: chr4:101494-100949 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-549
Cow position: chr4:1931185-1930640 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-549
Cow position: chr4:3125216-3125779 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 84

Conread position: 6-549
Cow position: chr4:5879613-5880149 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 84

Conread position: 6-549
Cow position: chr4:18425082-18424541 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 84

Conread position: 6-549
Cow position: chr4:43880545-43881092 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 13

Conread position: 6-549
Cow position: chr4:47764735-47764187 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 84

Conread position: 6-562
Cow position: chr4:13492011-13492572 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-562
Cow position: chr4:46663639-46664189 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 89

Conread position: 6-562
Cow position: chr4:65224099-65223537 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-563
Cow position: chr4:6490911-6490367 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 83

Conread position: 6-563
Cow position: chr4:16359327-16359881 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 39

Conread position: 6-563
Cow position: chr4:17926819-17926257 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 84

Conread position: 6-563
Cow position: chr4:18516331-18516894 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-563
Cow position: chr4:36895809-36896365 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 84

Conread position: 6-563
Cow position: chr4:41330875-41331436 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 83

Conread position: 6-563
Cow position: chr4:43320201-43319649 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-563
Cow position: chr4:45049860-45049301 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 83

Conread position: 6-564
Cow position: chr4:6269193-6268629 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 84

Conread position: 6-564
Cow position: chr4:12241785-12241219 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 85

Conread position: 6-564
Cow position: chr4:21338545-21338004 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 36

Conread position: 6-566
Cow position: chr4:44724518-44725083 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 84

Conread position: 6-567
Cow position: chr4:602432-602995 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 84

Conread position: 6-567
Cow position: chr4:66179550-66178986 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 13

Conread position: 6-567
Cow position: chr4:66925440-66925999 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 53

Conread position: 7-563
Cow position: chr4:48025838-48026394 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 82

Conread position: 8-549
Cow position: chr4:24445762-24445223 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 45

Conread position: 8-562
Cow position: chr4:355351-355906 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 82

Conread position: 10-227
Cow position: chr4:58883236-58883027 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 68, 80

Conread position: 10-549
Cow position: chr4:30308014-30307475 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 79

Conread position: 10-557
Cow position: chr4:16056047-16056593 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 13

Conread position: 10-557
Cow position: chr4:32211606-32212159 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 80

Conread position: 10-558
Cow position: chr4:34185419-34184891 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 48

Conread position: 10-559
Cow position: chr4:1497310-1496765 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 54

Conread position: 10-560
Cow position: chr4:40824804-40824258 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 85

Conread position: 11-250
Cow position: chr4:54190302-54190533 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 75, 0

Conread position: 15-557
Cow position: chr4:157960-158507 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 75

Conread position: 15-562
Cow position: chr4:11393891-11393350 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 54

Conread position: 18-561
Cow position: chr4:8598684-8598163 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 53

Conread position: 19-343
Cow position: chr4:11383859-11384176 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 199, 72

Conread position: 22-406
Cow position: chr4:1371559-1371165 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 68

Conread position: 23-482
Cow position: chr4:6215100-6214642 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 73

Conread position: 34-560
Cow position: chr4:969577-969048 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 62

Conread position: 46-243
Cow position: chr4:33630524-33630719 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 56

Conread position: 47-278
Cow position: chr4:12608028-12607799 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 48

Conread position: 58-561
Cow position: chr4:26887356-26886869 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 32

Conread position: 60-563
Cow position: chr4:47718120-47717609 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 287

Conread position: 83-505
Cow position: chr4:3829993-3830415 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 281
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 192, 93

Conread position: 84-545
Cow position: chr4:33073584-33073130 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 6

Conread position: 86-563
Cow position: chr4:57979145-57979625 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 226

Conread position: 94-511
Cow position: chr4:9101864-9102283 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 267
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 268, 200

Conread position: 99-505
Cow position: chr4:4175964-4176369 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 269
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 203, 168

Conread position: 99-563
Cow position: chr4:11618388-11618848 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 71

Conread position: 102-557
Cow position: chr4:27332973-27333427 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 244

Conread position: 116-498
Cow position: chr4:21564690-21565036 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 266
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 245, 103

Conread position: 149-563
Cow position: chr4:60264983-60264570 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 26

Conread position: 160-545
Cow position: chr4:41119600-41119993 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 184

Conread position: 191-456
Cow position: chr4:23493365-23493626 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 204
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 21, 15

Conread position: 231-424
Cow position: chr4:60673532-60673717 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 71, 45

Conread position: 235-562
Cow position: chr4:12586961-12587295 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 110

Conread position: 243-568
Cow position: chr4:47517994-47518307 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 215
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 59, 36

Conread position: 244-563
Cow position: chr4:61256568-61256889 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 108

Conread position: 270-567
Cow position: chr4:9355073-9354769 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 82

Conread position: 320-469
Cow position: chr4:27443203-27443360 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 43, 31

Conread position: 326-562
Cow position: chr4:9587018-9587260 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 38, 25

Conread position: 330-563
Cow position: chr4:11384718-11384953 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 169
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 33, 21

Conread position: 372-549
Cow position: chr4:4415885-4416066 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 51, 33

Conread position: 377-563
Cow position: chr4:10408485-10408671 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 92, 37

Conread position: 384-564
Cow position: chr4:51044114-51043934 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 86, 21

Conread position: 406-549
Cow position: chr4:41954308-41954458 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 406-549
Cow position: chr4:41957963-41958113 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 431-549
Cow position: chr4:18190271-18190389 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.