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Cow genome map

           
Conread name:
           
Utr1-UTR010045E09
        

               
Conread position:
               
2-516
               

               
Cow position:
               
chrX:28875899-28875401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
3-549
               

               
Cow position:
               
chrX:16275182-16275732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
3-564
               

               
Cow position:
               
chrX:20698771-20698229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 12
               

               
Conread position:
               
3-567
               

               
Cow position:
               
chrX:2563354-2562784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 87
               

               
Conread position:
               
5-166
               

               
Cow position:
               
chrX:28604297-28604136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
90, 43
               

               
Conread position:
               
5-373
               

               
Cow position:
               
chrX:24380816-24381184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 85
               

               
Conread position:
               
5-536
               

               
Cow position:
               
chrX:29882741-29882188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 98
               

               
Conread position:
               
5-547
               

               
Cow position:
               
chrX:12804354-12803811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 85
               

               
Conread position:
               
5-558
               

               
Cow position:
               
chrX:17632315-17631765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
5-560
               

               
Cow position:
               
chrX:20796116-20796678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
5-561
               

               
Cow position:
               
chrX:21339908-21340471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 5
               

               
Conread position:
               
5-561
               

               
Cow position:
               
chrX:28549402-28549932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
77, 10
               

               
Conread position:
               
5-562
               

               
Cow position:
               
chrX:2142809-2143348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 14
               

               
Conread position:
               
5-563
               

               
Cow position:
               
chrX:970271-970836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 85
               

               
Conread position:
               
5-563
               

               
Cow position:
               
chrX:24136889-24136336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 90
               

               
Conread position:
               
5-563
               

               
Cow position:
               
chrX:29951060-29950511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 85
               

               
Conread position:
               
6-132
               

               
Cow position:
               
chrX:24276000-24275874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
108, 90
               

               
Conread position:
               
6-165
               

               
Cow position:
               
chrX:25187166-25187324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
6-173
               

               
Cow position:
               
chrX:11534993-11535153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
6-174
               

               
Cow position:
               
chrX:9172860-9172692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
152, 83
               

               
Conread position:
               
6-194
               

               
Cow position:
               
chrX:12182706-12182893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
6-194
               

               
Cow position:
               
chrX:21586544-21586728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
71, 12
               

               
Conread position:
               
6-194
               

               
Cow position:
               
chrX:26628809-26628627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
6-213
               

               
Cow position:
               
chrX:28506432-28506224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
186, 83
               

               
Conread position:
               
6-253
               

               
Cow position:
               
chrX:38145567-38145812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
6-258
               

               
Cow position:
               
chrX:25332600-25332846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
6-262
               

               
Cow position:
               
chrX:41151734-41151987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
6-270
               

               
Cow position:
               
chrX:23276626-23276887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
6-272
               

               
Cow position:
               
chrX:5834658-5834399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
6-280
               

               
Cow position:
               
chrX:29093011-29093282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
6-301
               

               
Cow position:
               
chrX:30056179-30056467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
6-316
               

               
Cow position:
               
chrX:30046608-30046300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 84
               

               
Conread position:
               
6-321
               

               
Cow position:
               
chrX:24325639-24325323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 84
               

               
Conread position:
               
6-331
               

               
Cow position:
               
chrX:13052179-13052495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
296, 84
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chrX:8963549-8963224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 83
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chrX:3421932-3421592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 84
               

               
Conread position:
               
6-375
               

               
Cow position:
               
chrX:12341704-12342069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 84
               

               
Conread position:
               
6-390
               

               
Cow position:
               
chrX:4795424-4795820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 89
               

               
Conread position:
               
6-414
               

               
Cow position:
               
chrX:22131187-22130791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 81
               

               
Conread position:
               
6-422
               

               
Cow position:
               
chrX:8479212-8479623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 57
               

               
Conread position:
               
6-422
               

               
Cow position:
               
chrX:30666432-30666017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
355, 84
               

               
Conread position:
               
6-454
               

               
Cow position:
               
chrX:16236839-16237268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 43
               

               
Conread position:
               
6-473
               

               
Cow position:
               
chrX:3085395-3084923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 84
               

               
Conread position:
               
6-473
               

               
Cow position:
               
chrX:12289435-12288957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 84
               

               
Conread position:
               
6-494
               

               
Cow position:
               
chrX:21489740-21490229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 92
               

               
Conread position:
               
6-513
               

               
Cow position:
               
chrX:22893852-22893350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 37
               

               
Conread position:
               
6-519
               

               
Cow position:
               
chrX:2860292-2859776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 82
               

               
Conread position:
               
6-519
               

               
Cow position:
               
chrX:5395456-5394937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 89
               

               
Conread position:
               
6-520
               

               
Cow position:
               
chrX:32095452-32094937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 84
               

               
Conread position:
               
6-525
               

               
Cow position:
               
chrX:26400960-26400438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 27
               

               
Conread position:
               
6-530
               

               
Cow position:
               
chrX:21829033-21829560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 84
               

               
Conread position:
               
6-531
               

               
Cow position:
               
chrX:30184381-30183857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 62
               

               
Conread position:
               
6-533
               

               
Cow position:
               
chrX:13413609-13413077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 84
               

               
Conread position:
               
6-536
               

               
Cow position:
               
chrX:15127736-15127200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 84
               

               
Conread position:
               
6-536
               

               
Cow position:
               
chrX:33704753-33705275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
365, 96
               

               
Conread position:
               
6-539
               

               
Cow position:
               
chrX:14787366-14786827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 90
               

               
Conread position:
               
6-539
               

               
Cow position:
               
chrX:17668774-17668257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
355, 16
               

               
Conread position:
               
6-547
               

               
Cow position:
               
chrX:20316547-20316002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 39
               

               
Conread position:
               
6-548
               

               
Cow position:
               
chrX:7751405-7751954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 84
               

               
Conread position:
               
6-548
               

               
Cow position:
               
chrX:13077185-13076643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 84
               

               
Conread position:
               
6-548
               

               
Cow position:
               
chrX:13097759-13097217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 84
               

               
Conread position:
               
6-548
               

               
Cow position:
               
chrX:15179922-15179377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 82
               

               
Conread position:
               
6-548
               

               
Cow position:
               
chrX:22619808-22619254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 83
               

               
Conread position:
               
6-548
               

               
Cow position:
               
chrX:29854057-29853515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
355, 89
               

               
Conread position:
               
6-548
               

               
Cow position:
               
chrX:29873051-29872511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:2101368-2101914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 84
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:2603555-2604103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 84
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:5862904-5863453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 84
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:7029697-7030243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 84
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:8586601-8587149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 58
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:10532052-10531503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 84
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:12280749-12280215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
358, 84
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:12655247-12654705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 84
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:13398607-13398065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 84
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:18218903-18219452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 84
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:24088909-24089457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 84
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:26767686-26767143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 84
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:28634906-28634361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 92
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:28759119-28758586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
355, 84
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:30174153-30173616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 42
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:31187727-31187190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 84
               

               
Conread position:
               
6-549
               

               
Cow position:
               
chrX:37848519-37849069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 86
               

               
Conread position:
               
6-557
               

               
Cow position:
               
chrX:22777822-22778375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 87
               

               
Conread position:
               
6-557
               

               
Cow position:
               
chrX:26504702-26505247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 48
               

               
Conread position:
               
6-557
               

               
Cow position:
               
chrX:27990266-27989718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 64
               

               
Conread position:
               
6-562
               

               
Cow position:
               
chrX:1546441-1547003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 84
               

               
Conread position:
               
6-562
               

               
Cow position:
               
chrX:15598436-15598998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 84
               

               
Conread position:
               
6-562
               

               
Cow position:
               
chrX:16363616-16363056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 84
               

               
Conread position:
               
6-562
               

               
Cow position:
               
chrX:26527482-26528044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 84
               

               
Conread position:
               
6-562
               

               
Cow position:
               
chrX:39521413-39521975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 84
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:319977-320536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 84
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:1833341-1833900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 84
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:5299696-5299154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 78
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:6909828-6909277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 94
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:13007127-13006556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 85
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:16698808-16699369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 84
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:18955008-18954456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 84
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:20803646-20804196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 43
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:21222434-21222997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 84
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:21289978-21289422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 42
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:22487695-22488250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 84
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:23392095-23391530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 84
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:27494211-27494779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 343
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:29794616-29794047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 90
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:30142884-30142327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 91
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:30179486-30178926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 84
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:30232597-30232039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 84
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:30710861-30711418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
355, 19
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:32466761-32467321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 84
               

               
Conread position:
               
6-564
               

               
Cow position:
               
chrX:18532512-18533059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 89
               

               
Conread position:
               
6-564
               

               
Cow position:
               
chrX:24275178-24275740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 85
               

               
Conread position:
               
6-566
               

               
Cow position:
               
chrX:2483133-2482566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 84
               

               
Conread position:
               
6-566
               

               
Cow position:
               
chrX:12478228-12478793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 82
               

               
Conread position:
               
6-567
               

               
Cow position:
               
chrX:7481113-7481676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 83
               

               
Conread position:
               
6-567
               

               
Cow position:
               
chrX:8454262-8454825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 84
               

               
Conread position:
               
6-567
               

               
Cow position:
               
chrX:8670102-8670664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 84
               

               
Conread position:
               
6-567
               

               
Cow position:
               
chrX:9193138-9192571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 84
               

               
Conread position:
               
6-567
               

               
Cow position:
               
chrX:11465490-11464929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 24
               

               
Conread position:
               
6-567
               

               
Cow position:
               
chrX:17479016-17478449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 103
               

               
Conread position:
               
6-567
               

               
Cow position:
               
chrX:23046652-23047217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 84
               

               
Conread position:
               
6-567
               

               
Cow position:
               
chrX:24122411-24121847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 89
               

               
Conread position:
               
6-605
               

               
Cow position:
               
chrX:29174091-29173495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
152, 71
               

               
Conread position:
               
7-224
               

               
Cow position:
               
chrX:28651615-28651405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
7-549
               

               
Cow position:
               
chrX:23456063-23455523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 83
               

               
Conread position:
               
7-563
               

               
Cow position:
               
chrX:23018840-23019393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 81
               

               
Conread position:
               
7-567
               

               
Cow position:
               
chrX:21602396-21602952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
354, 84
               

               
Conread position:
               
7-567
               

               
Cow position:
               
chrX:21633074-21632514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
354, 49
               

               
Conread position:
               
8-213
               

               
Cow position:
               
chrX:28553583-28553780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
8-417
               

               
Cow position:
               
chrX:31198110-31198526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 340
               

               
Conread position:
               
8-563
               

               
Cow position:
               
chrX:26759082-26758536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 81
               

               
Conread position:
               
8-567
               

               
Cow position:
               
chrX:40057553-40056993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 84
               

               
Conread position:
               
9-549
               

               
Cow position:
               
chrX:3376594-3376053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
462, 0
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chrX:28522186-28521957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
10-286
               

               
Cow position:
               
chrX:20360420-20360145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 79
               

               
Conread position:
               
10-530
               

               
Cow position:
               
chrX:12998050-12997543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 76
               

               
Conread position:
               
10-548
               

               
Cow position:
               
chrX:6873558-6873019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 18
               

               
Conread position:
               
10-549
               

               
Cow position:
               
chrX:22526091-22525549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 80
               

               
Conread position:
               
10-549
               

               
Cow position:
               
chrX:27426806-27426265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 80
               

               
Conread position:
               
10-557
               

               
Cow position:
               
chrX:22583201-22582636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 93
               

               
Conread position:
               
10-567
               

               
Cow position:
               
chrX:35017329-35017882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
362, 9
               

               
Conread position:
               
11-500
               

               
Cow position:
               
chrX:16017612-16017138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 84
               

               
Conread position:
               
11-561
               

               
Cow position:
               
chrX:5324205-5323656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 48
               

               
Conread position:
               
12-455
               

               
Cow position:
               
chrX:31080047-31080478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
348, 79
               

               
Conread position:
               
12-463
               

               
Cow position:
               
chrX:2380301-2380739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
109, 55
               

               
Conread position:
               
12-468
               

               
Cow position:
               
chrX:11668923-11668469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 86
               

               
Conread position:
               
12-533
               

               
Cow position:
               
chrX:19927828-19928330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
46, 75
               

               
Conread position:
               
12-549
               

               
Cow position:
               
chrX:7093114-7093653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 78
               

               
Conread position:
               
12-563
               

               
Cow position:
               
chrX:24484895-24484344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 78
               

               
Conread position:
               
12-570
               

               
Cow position:
               
chrX:9007854-9008415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 78
               

               
Conread position:
               
15-321
               

               
Cow position:
               
chrX:39717316-39717619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 80
               

               
Conread position:
               
15-451
               

               
Cow position:
               
chrX:19185433-19185012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
413, 80
               

               
Conread position:
               
15-562
               

               
Cow position:
               
chrX:5284215-5283667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 12
               

               
Conread position:
               
18-515
               

               
Cow position:
               
chrX:32430209-32430679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
295, 32
               

               
Conread position:
               
20-538
               

               
Cow position:
               
chrX:21270661-21270152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 76
               

               
Conread position:
               
28-512
               

               
Cow position:
               
chrX:21794628-21795113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 58
               

               
Conread position:
               
28-549
               

               
Cow position:
               
chrX:28562682-28562159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 62
               

               
Conread position:
               
29-361
               

               
Cow position:
               
chrX:6276061-6275733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 66
               

               
Conread position:
               
29-565
               

               
Cow position:
               
chrX:6015925-6015391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 62
               

               
Conread position:
               
30-372
               

               
Cow position:
               
chrX:35020516-35020858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 65
               

               
Conread position:
               
31-207
               

               
Cow position:
               
chrX:12973901-12973728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
36-561
               

               
Cow position:
               
chrX:30386083-30385570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
260, 59
               

               
Conread position:
               
45-502
               

               
Cow position:
               
chrX:6283535-6283084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 51
               

               
Conread position:
               
59-567
               

               
Cow position:
               
chrX:35529420-35529936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 31
               

               
Conread position:
               
60-557
               

               
Cow position:
               
chrX:22813947-22814445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 40
               

               
Conread position:
               
67-562
               

               
Cow position:
               
chrX:18660214-18659715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 23
               

               
Conread position:
               
73-491
               

               
Cow position:
               
chrX:29813283-29813702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
282, 27
               

               
Conread position:
               
80-564
               

               
Cow position:
               
chrX:34988461-34988967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 20
               

               
Conread position:
               
83-307
               

               
Cow position:
               
chrX:16935972-16935750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 7
               

               
Conread position:
               
83-563
               

               
Cow position:
               
chrX:23041532-23041054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 13
               

               
Conread position:
               
89-459
               

               
Cow position:
               
chrX:34344146-34344525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
89-562
               

               
Cow position:
               
chrX:5839926-5840400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 82
               

               
Conread position:
               
89-563
               

               
Cow position:
               
chrX:29285023-29285485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 19
               

               
Conread position:
               
90-561
               

               
Cow position:
               
chrX:9124948-9125426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 255
               

               
Conread position:
               
96-564
               

               
Cow position:
               
chrX:2537176-2536712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 249
               

               
Conread position:
               
99-567
               

               
Cow position:
               
chrX:21304941-21304453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 266
               

               
Conread position:
               
104-562
               

               
Cow position:
               
chrX:30369397-30368950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 52
               

               
Conread position:
               
111-471
               

               
Cow position:
               
chrX:18939604-18939241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
112-549
               

               
Cow position:
               
chrX:37811773-37812217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 233
               

               
Conread position:
               
116-562
               

               
Cow position:
               
chrX:41411405-41410953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 12
               

               
Conread position:
               
138-559
               

               
Cow position:
               
chrX:40247677-40247251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 60
               

               
Conread position:
               
140-549
               

               
Cow position:
               
chrX:39564290-39563876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 58
               

               
Conread position:
               
141-548
               

               
Cow position:
               
chrX:29947344-29947761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 207
               

               
Conread position:
               
141-563
               

               
Cow position:
               
chrX:12670220-12669795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 42
               

               
Conread position:
               
152-537
               

               
Cow position:
               
chrX:28603804-28603415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 115
               

               
Conread position:
               
184-567
               

               
Cow position:
               
chrX:982323-982711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 14
               

               
Conread position:
               
189-427
               

               
Cow position:
               
chrX:21586855-21587092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 90
               

               
Conread position:
               
189-549
               

               
Cow position:
               
chrX:1943353-1942989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 9
               

               
Conread position:
               
200-564
               

               
Cow position:
               
chrX:12973532-12973161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 144
               

               
Conread position:
               
200-567
               

               
Cow position:
               
chrX:26628333-26627959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 145
               

               
Conread position:
               
209-536
               

               
Cow position:
               
chrX:44386181-44386517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 12
               

               
Conread position:
               
221-538
               

               
Cow position:
               
chrX:23276744-23277066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
153, 193
               

               
Conread position:
               
221-549
               

               
Cow position:
               
chrX:28584700-28585035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 131
               

               
Conread position:
               
231-469
               

               
Cow position:
               
chrX:5336738-5336495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
67, 114
               

               
Conread position:
               
231-558
               

               
Cow position:
               
chrX:35390363-35390035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
65, 94
               

               
Conread position:
               
232-579
               

               
Cow position:
               
chrX:26421430-26421772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
130, 64
               

               
Conread position:
               
233-522
               

               
Cow position:
               
chrX:5834234-5833936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 122
               

               
Conread position:
               
233-549
               

               
Cow position:
               
chrX:16461409-16461725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 112
               

               
Conread position:
               
233-562
               

               
Cow position:
               
chrX:31192070-31191742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
63, 76
               

               
Conread position:
               
244-563
               

               
Cow position:
               
chrX:38146048-38146374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 108
               

               
Conread position:
               
250-558
               

               
Cow position:
               
chrX:29757908-29758225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
6, 156
               

               
Conread position:
               
263-564
               

               
Cow position:
               
chrX:3398083-3397777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 62
               

               
Conread position:
               
285-513
               

               
Cow position:
               
chrX:38576039-38575800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
17, 72
               

               
Conread position:
               
285-564
               

               
Cow position:
               
chrX:31724809-31725096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
288-538
               

               
Cow position:
               
chrX:11663718-11663461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 64
               

               
Conread position:
               
312-563
               

               
Cow position:
               
chrX:39719249-39719509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 39
               

               
Conread position:
               
325-563
               

               
Cow position:
               
chrX:30044320-30044076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
328-549
               

               
Cow position:
               
chrX:31493252-31493475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
331-549
               

               
Cow position:
               
chrX:12353070-12353295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
348-538
               

               
Cow position:
               
chrX:47457851-47457653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
348-549
               

               
Cow position:
               
chrX:17050940-17051150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 60
               

               
Conread position:
               
351-564
               

               
Cow position:
               
chrX:35021117-35021328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
23, 47
               

               
Conread position:
               
364-560
               

               
Cow position:
               
chrX:13052497-13052693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
365-566
               

               
Cow position:
               
chrX:16812727-16812519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
8, 41
               

               
Conread position:
               
377-563
               

               
Cow position:
               
chrX:37142711-37142521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
384-567
               

               
Cow position:
               
chrX:6275732-6275542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
386-562
               

               
Cow position:
               
chrX:11433589-11433769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
388-549
               

               
Cow position:
               
chrX:20360161-20359996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
390-549
               

               
Cow position:
               
chrX:30010931-30011094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
406-562
               

               
Cow position:
               
chrX:30055830-30055668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
430-550
               

               
Cow position:
               
chrX:41851464-41851343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
431-568
               

               
Cow position:
               
chrX:21587127-21587264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 124
               
Show alignments to all cow chromosomes.