Cow genome map
| Conread name: | Utr1-UTR010059E06 |
| Conread position: | 258-474 |
| Cow position: | chr1:14561729-14561940 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 116, 121 |
| Conread position: | 259-465 |
| Cow position: | chr1:86505868-86506063 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 259-471 |
| Cow position: | chr1:53309178-53309383 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 259-475 |
| Cow position: | chr1:22789890-22789673 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 59 |
| Conread position: | 259-475 |
| Cow position: | chr1:44127356-44127569 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 120, 67 |
| Conread position: | 259-475 |
| Cow position: | chr1:59483377-59483591 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 259-475 |
| Cow position: | chr1:86592817-86593032 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 92, 82 |
| Conread position: | 260-461 |
| Cow position: | chr1:25119797-25119993 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 260-471 |
| Cow position: | chr1:68282033-68281825 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 260-473 |
| Cow position: | chr1:37541825-37542033 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 260-473 |
| Cow position: | chr1:43449024-43449238 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 32, 51 |
| Conread position: | 260-473 |
| Cow position: | chr1:85142730-85142950 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 70, 183 |
| Conread position: | 260-474 |
| Cow position: | chr1:23099118-23098910 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 260-474 |
| Cow position: | chr1:56746369-56746157 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 260-475 |
| Cow position: | chr1:3340153-3339938 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 177, 156 |
| Conread position: | 260-475 |
| Cow position: | chr1:5013313-5013526 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 159, 72 |
| Conread position: | 260-475 |
| Cow position: | chr1:26446640-26446426 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 147, 167 |
| Conread position: | 260-475 |
| Cow position: | chr1:26838440-26838227 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 260-475 |
| Cow position: | chr1:33716445-33716232 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 260-475 |
| Cow position: | chr1:38712197-38711984 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 260-475 |
| Cow position: | chr1:53371854-53371628 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 68, 193 |
| Conread position: | 260-475 |
| Cow position: | chr1:61220916-61220704 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 260-475 |
| Cow position: | chr1:61662053-61662265 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 260-475 |
| Cow position: | chr1:70534979-70535191 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 260-475 |
| Cow position: | chr1:71044985-71044779 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 260-475 |
| Cow position: | chr1:73762060-73762273 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 260-475 |
| Cow position: | chr1:79633070-79633280 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 260-475 |
| Cow position: | chr1:82879916-82879706 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 67, 99 |
| Conread position: | 260-475 |
| Cow position: | chr1:89492752-89492958 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 260-475 |
| Cow position: | chr1:101833880-101833669 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 47, 68 |
| Conread position: | 261-474 |
| Cow position: | chr1:33987339-33987552 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 177 |
| Conread position: | 261-475 |
| Cow position: | chr1:5162855-5163069 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 261-475 |
| Cow position: | chr1:20378110-20378324 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 261-475 |
| Cow position: | chr1:22253558-22253346 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 137, 80 |
| Conread position: | 261-475 |
| Cow position: | chr1:49132689-49132901 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 261-475 |
| Cow position: | chr1:73870338-73870124 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 261-475 |
| Cow position: | chr1:88563433-88563642 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 261-476 |
| Cow position: | chr1:22481174-22481389 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 263-475 |
| Cow position: | chr1:21352838-21353045 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 40, 55 |
| Conread position: | 263-475 |
| Cow position: | chr1:61727605-61727807 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 276-475 |
| Cow position: | chr1:29656658-29656458 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 284-475 |
| Cow position: | chr1:7837300-7837489 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 284-475 |
| Cow position: | chr1:54933389-54933200 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 284-475 |
| Cow position: | chr1:57396861-57397042 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 284-475 |
| Cow position: | chr1:71559289-71559472 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 284-475 |
| Cow position: | chr1:83136405-83136214 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 75, 146 |
| Conread position: | 286-475 |
| Cow position: | chr1:12871996-12872183 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 151 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 287-475 |
| Cow position: | chr1:52434484-52434297 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 150 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 287-475 |
| Cow position: | chr1:64594852-64595038 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 293-475 |
| Cow position: | chr1:16797650-16797824 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 299-475 |
| Cow position: | chr1:12803529-12803364 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 302-471 |
| Cow position: | chr1:31190982-31191148 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 323-475 |
| Cow position: | chr1:98535019-98534868 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 112 |
| Conread position: | 343-475 |
| Cow position: | chr1:28413823-28413952 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
Show alignments to all cow chromosomes.