Cow genome map

Conread name: Utr1-UTR010070C09

Conread position: 1-143
Cow position: chr29:27911799-27911659 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-148
Cow position: chr29:2056268-2056125 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 14, 93

Conread position: 1-150
Cow position: chr29:4023203-4023060 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 1-150
Cow position: chr29:6517435-6517291 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 1-150
Cow position: chr29:30294664-30294811 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 1-150
Cow position: chr29:30920194-30920341 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 97, 9

Conread position: 2-142
Cow position: chr29:14828023-14828158 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 2-144
Cow position: chr29:14614830-14614969 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 2-144
Cow position: chr29:26211259-26211120 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 2-144
Cow position: chr29:26777216-26777076 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 2-144
Cow position: chr29:32656642-32656501 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 131, 31

Conread position: 2-144
Cow position: chr29:38754732-38754869 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 2-145
Cow position: chr29:17436955-17436813 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 37

Conread position: 2-145
Cow position: chr29:22018980-22019120 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 36

Conread position: 2-146
Cow position: chr29:4121061-4120920 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 88, 8

Conread position: 2-150
Cow position: chr29:1933364-1933509 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 2-150
Cow position: chr29:4741183-4741329 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 31, 0

Conread position: 2-150
Cow position: chr29:5046860-5046715 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 36

Conread position: 2-150
Cow position: chr29:5953650-5953797 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 78, 33

Conread position: 2-150
Cow position: chr29:8163622-8163767 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 2-150
Cow position: chr29:11081186-11081334 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 13, 41

Conread position: 2-150
Cow position: chr29:11894907-11894760 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 12, 37

Conread position: 2-150
Cow position: chr29:14746984-14746842 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 122
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 2-150
Cow position: chr29:16735432-16735286 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 27, 0

Conread position: 2-150
Cow position: chr29:22534169-22534023 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 2-150
Cow position: chr29:24119292-24119438 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 2-150
Cow position: chr29:28420963-28420817 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 31, 0

Conread position: 2-150
Cow position: chr29:33321555-33321409 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 35, 0

Conread position: 2-150
Cow position: chr29:37618514-37618368 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 2-150
Cow position: chr29:38732363-38732215 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 15, 33

Conread position: 2-150
Cow position: chr29:42630323-42630183 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 2-158
Cow position: chr29:41094322-41094171 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 2-159
Cow position: chr29:11685375-11685220 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 31, 0

Conread position: 3-143
Cow position: chr29:3711581-3711443 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 3-144
Cow position: chr29:35189814-35189675 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 3-145
Cow position: chr29:684973-685111 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 3-150
Cow position: chr29:5520278-5520423 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 121
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 5, 36

Conread position: 3-150
Cow position: chr29:8605733-8605873 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 3-150
Cow position: chr29:16200271-16200416 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 3-150
Cow position: chr29:22576973-22577117 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 3-150
Cow position: chr29:34483420-34483566 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 133, 30

Conread position: 4-146
Cow position: chr29:40891503-40891640 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 4-158
Cow position: chr29:19363913-19363764 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 34

Conread position: 6-150
Cow position: chr29:24293072-24292930 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 94, 35

Conread position: 6-150
Cow position: chr29:31929188-31929049 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 7-150
Cow position: chr29:24605097-24604958 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 7-152
Cow position: chr29:30227079-30227221 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 7-155
Cow position: chr29:20644118-20643971 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 111, 28

Conread position: 7-162
Cow position: chr29:22720446-22720593 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 10-135
Cow position: chr29:6337848-6337727 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 10-140
Cow position: chr29:659479-659354 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 92, 27

Conread position: 10-143
Cow position: chr29:7040670-7040803 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 84, 22

Conread position: 10-143
Cow position: chr29:19949503-19949376 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 10-143
Cow position: chr29:21645515-21645378 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 73, 27

Conread position: 10-143
Cow position: chr29:32307367-32307495 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 123, 31

Conread position: 10-144
Cow position: chr29:774188-774056 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 10-150
Cow position: chr29:4648014-4648147 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 27, 0

Conread position: 10-150
Cow position: chr29:5408944-5409079 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 10-150
Cow position: chr29:14577055-14576921 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 10-150
Cow position: chr29:15947367-15947229 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 119
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 23, 0

Conread position: 10-150
Cow position: chr29:16609950-16609810 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 25

Conread position: 10-150
Cow position: chr29:17110151-17110019 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 10-150
Cow position: chr29:17297336-17297198 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 118
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 23, 0

Conread position: 10-150
Cow position: chr29:18878284-18878419 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 25, 0

Conread position: 10-150
Cow position: chr29:19420422-19420551 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 10-150
Cow position: chr29:29057377-29057237 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 26, 79

Conread position: 10-150
Cow position: chr29:32655896-32656028 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 10-150
Cow position: chr29:35677343-35677481 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 10-150
Cow position: chr29:36357326-36357188 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 27, 0

Conread position: 10-150
Cow position: chr29:41531049-41530912 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 10-152
Cow position: chr29:9709891-9709755 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 10-152
Cow position: chr29:18449940-18450078 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 10-152
Cow position: chr29:31489522-31489379 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 84, 27

Conread position: 10-153
Cow position: chr29:23874660-23874518 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 141, 27

Conread position: 11-132
Cow position: chr29:6716315-6716434 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 11-150
Cow position: chr29:4441008-4441142 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 12-150
Cow position: chr29:23142136-23142272 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 25, 0

Conread position: 12-150
Cow position: chr29:44684295-44684160 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 24

Conread position: 12-152
Cow position: chr29:10203965-10203832 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 13-150
Cow position: chr29:23819189-23819328 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 67, 20

Conread position: 13-151
Cow position: chr29:16164240-16164375 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 14-150
Cow position: chr29:41422715-41422849 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 15-150
Cow position: chr29:30441132-30440999 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 92, 23

Conread position: 16-150
Cow position: chr29:34359632-34359759 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 10, 23

Conread position: 22-150
Cow position: chr29:23991643-23991769 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 24-136
Cow position: chr29:35663732-35663843 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 75, 9

Conread position: 24-152
Cow position: chr29:26017316-26017442 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 24-153
Cow position: chr29:24365713-24365840 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 27-150
Cow position: chr29:23825031-23825148 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 35-150
Cow position: chr29:28257317-28257203 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 37-145
Cow position: chr29:8669528-8669421 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 37-150
Cow position: chr29:2414577-2414690 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 43-152
Cow position: chr29:12025309-12025415 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 44-150
Cow position: chr29:21443170-21443276 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 149-283
Cow position: chr29:10659526-10659392 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 53

Conread position: 152-277
Cow position: chr29:16657505-16657630 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 10, 47

Conread position: 152-278
Cow position: chr29:87201-87075 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 10, 50

Conread position: 152-278
Cow position: chr29:3100441-3100316 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 50

Conread position: 162-267
Cow position: chr29:4334555-4334658 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 162-278
Cow position: chr29:4520163-4520276 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 167-278
Cow position: chr29:35291923-35292029 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 169-276
Cow position: chr29:24345615-24345512 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 29, 0

Show alignments to all cow chromosomes.