Cow genome map

Conread name: Utr1-UTR01B050090

Conread position: 118-321
Cow position: chr20:3599352-3599146 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 21

Conread position: 126-317
Cow position: chr20:4789795-4789605 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 10, 22

Conread position: 133-315
Cow position: chr20:38061702-38061521 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 147
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 111, 13

Conread position: 135-317
Cow position: chr20:1640389-1640210 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 15, 42

Conread position: 144-316
Cow position: chr20:17840819-17840998 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 31, 63

Conread position: 146-311
Cow position: chr20:19919740-19919570 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 146-316
Cow position: chr20:26996606-26996787 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 145
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 80, 44

Conread position: 147-299
Cow position: chr20:25162048-25161895 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 96, 112

Conread position: 147-304
Cow position: chr20:23358418-23358253 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 10, 22

Conread position: 147-305
Cow position: chr20:19636099-19635936 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 132
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 90, 68

Conread position: 147-309
Cow position: chr20:4786938-4786786 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 32

Conread position: 147-316
Cow position: chr20:24491952-24491773 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 36, 75

Conread position: 147-316
Cow position: chr20:28982778-28982950 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 79, 17

Conread position: 147-317
Cow position: chr20:11751728-11751909 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 8, 43

Conread position: 148-294
Cow position: chr20:13752303-13752444 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 71, 0

Conread position: 148-316
Cow position: chr20:3564235-3564409 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 92, 16

Conread position: 148-316
Cow position: chr20:7756547-7756384 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 7, 21

Conread position: 148-316
Cow position: chr20:42166704-42166535 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 12, 51

Conread position: 148-325
Cow position: chr20:21901902-21902064 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 149-292
Cow position: chr20:5702803-5702951 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 83, 72

Conread position: 149-293
Cow position: chr20:26905754-26905892 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 72, 0

Conread position: 149-298
Cow position: chr20:39269006-39268847 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 149-300
Cow position: chr20:14572284-14572140 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 149-300
Cow position: chr20:14879868-14880023 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 149-301
Cow position: chr20:3148763-3148919 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 106, 75

Conread position: 149-301
Cow position: chr20:4334451-4334300 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 54, 76

Conread position: 149-301
Cow position: chr20:34847985-34848141 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 79, 0

Conread position: 149-303
Cow position: chr20:25009553-25009393 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 79, 0

Conread position: 149-304
Cow position: chr20:398227-398071 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 94, 67

Conread position: 149-304
Cow position: chr20:4892040-4891877 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 96, 0

Conread position: 149-304
Cow position: chr20:19834751-19834590 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 73, 112

Conread position: 149-304
Cow position: chr20:22065145-22065302 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 149-304
Cow position: chr20:32847424-32847584 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 79, 0

Conread position: 149-305
Cow position: chr20:26387540-26387698 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 79, 127

Conread position: 149-307
Cow position: chr20:18379458-18379621 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 91, 29

Conread position: 149-310
Cow position: chr20:12581875-12581709 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 81, 0

Conread position: 149-310
Cow position: chr20:27315057-27315223 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 149-311
Cow position: chr20:19746050-19746220 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 149-311
Cow position: chr20:28605288-28605454 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 79, 0

Conread position: 149-311
Cow position: chr20:39398560-39398730 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 149-312
Cow position: chr20:7738152-7737986 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 136
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 79, 161

Conread position: 149-312
Cow position: chr20:10235910-10236068 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 154, 80

Conread position: 149-314
Cow position: chr20:1824549-1824381 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 71, 161

Conread position: 149-314
Cow position: chr20:7438772-7438606 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 86, 0

Conread position: 149-315
Cow position: chr20:11499087-11499256 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 83, 60

Conread position: 149-316
Cow position: chr20:8547147-8547314 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 37, 13

Conread position: 149-316
Cow position: chr20:35445024-35444853 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 79, 132

Conread position: 149-316
Cow position: chr20:38089992-38090170 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 79, 0

Conread position: 149-317
Cow position: chr20:2298707-2298540 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 94, 42

Conread position: 149-317
Cow position: chr20:8556190-8556016 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 82, 0

Conread position: 149-317
Cow position: chr20:20590222-20590045 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 87, 0

Conread position: 149-317
Cow position: chr20:20967400-20967575 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 149-317
Cow position: chr20:22012475-22012642 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 80, 128

Conread position: 149-317
Cow position: chr20:33532382-33532547 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 153, 73

Conread position: 149-323
Cow position: chr20:8578328-8578514 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 74, 166

Conread position: 149-324
Cow position: chr20:6054430-6054244 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 79, 121

Conread position: 149-325
Cow position: chr20:11359553-11359377 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 83, 118

Conread position: 149-325
Cow position: chr20:16977765-16977573 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 74, 0

Conread position: 149-326
Cow position: chr20:38701044-38700864 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 69, 174

Conread position: 149-327
Cow position: chr20:24069885-24070065 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 103, 61

Conread position: 149-328
Cow position: chr20:14490325-14490506 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 82, 139

Conread position: 149-364
Cow position: chr20:32237599-32237397 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 149-368
Cow position: chr20:14806966-14807190 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 83, 194

Conread position: 150-298
Cow position: chr20:24657273-24657425 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 150-310
Cow position: chr20:26041018-26040850 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 85, 0

Conread position: 150-313
Cow position: chr20:28441407-28441569 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 120, 67

Conread position: 150-351
Cow position: chr20:13617306-13617500 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 169, 73

Conread position: 151-311
Cow position: chr20:3255117-3255283 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 151-316
Cow position: chr20:20158217-20158385 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 92, 0

Conread position: 151-316
Cow position: chr20:24097082-24097249 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 81, 0

Conread position: 151-317
Cow position: chr20:7426116-7425946 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 77, 151

Conread position: 151-317
Cow position: chr20:24314952-24314782 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 92, 31

Conread position: 151-326
Cow position: chr20:10956395-10956573 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 92, 0

Conread position: 151-326
Cow position: chr20:12420537-12420355 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 76, 25

Conread position: 152-316
Cow position: chr20:11548642-11548476 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 80, 157

Conread position: 152-316
Cow position: chr20:22265170-22265015 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 152-316
Cow position: chr20:35146103-35146267 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 63, 56

Conread position: 153-304
Cow position: chr20:7659130-7658984 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 122, 29

Conread position: 155-316
Cow position: chr20:35201731-35201580 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 155-325
Cow position: chr20:38430935-38430760 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 156

Conread position: 157-310
Cow position: chr20:23541073-23540924 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 157-313
Cow position: chr20:38934968-38934816 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 157-316
Cow position: chr20:2316338-2316174 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 157-316
Cow position: chr20:38818087-38818243 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 85, 59

Conread position: 157-330
Cow position: chr20:21279473-21279649 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 88, 67

Conread position: 158-304
Cow position: chr20:15568861-15568722 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 158-316
Cow position: chr20:14755752-14755590 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 74, 0

Conread position: 159-312
Cow position: chr20:23506024-23506185 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 70, 147

Conread position: 162-317
Cow position: chr20:7383884-7383736 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 7, 0

Conread position: 163-316
Cow position: chr20:35605300-35605456 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 77, 0

Conread position: 164-299
Cow position: chr20:18423774-18423912 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 64, 117

Conread position: 164-311
Cow position: chr20:14980411-14980259 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 47

Conread position: 164-316
Cow position: chr20:4931175-4931332 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 64, 25

Conread position: 164-316
Cow position: chr20:23846570-23846411 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 164-316
Cow position: chr20:25351319-25351175 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 164-338
Cow position: chr20:21325420-21325601 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 52, 148

Conread position: 167-310
Cow position: chr20:17530096-17529952 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 76, 28

Conread position: 167-316
Cow position: chr20:21169665-21169516 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 167-325
Cow position: chr20:22235409-22235558 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 59, 0

Conread position: 168-310
Cow position: chr20:13805419-13805563 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 60, 0

Conread position: 172-316
Cow position: chr20:11368260-11368111 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 73, 51

Conread position: 180-312
Cow position: chr20:1220445-1220314 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 186-361
Cow position: chr20:19623128-19622945 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 33

Conread position: 195-304
Cow position: chr20:3502632-3502741 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 26

Conread position: 203-316
Cow position: chr20:17764983-17764870 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 105

Show alignments to all cow chromosomes.