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Cow genome map

           
Conread name:
           
Utr1-UTR01D050106
        

               
Conread position:
               
1-452
               

               
Cow position:
               
chr1:89344397-89344837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 110
               

               
Conread position:
               
1-476
               

               
Cow position:
               
chr1:43893405-43893875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 187
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr1:81859728-81859266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
373, 82
               

               
Conread position:
               
1-494
               

               
Cow position:
               
chr1:68282283-68282772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
361, 74
               

               
Conread position:
               
1-508
               

               
Cow position:
               
chr1:53613720-53613212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 110
               

               
Conread position:
               
1-520
               

               
Cow position:
               
chr1:69941478-69940975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 120
               

               
Conread position:
               
1-550
               

               
Cow position:
               
chr1:68783172-68782614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 44
               

               
Conread position:
               
1-550
               

               
Cow position:
               
chr1:78795254-78794714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 27
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr1:82861272-82861807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 99
               

               
Conread position:
               
1-567
               

               
Cow position:
               
chr1:56718801-56719341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 180
               

               
Conread position:
               
1-567
               

               
Cow position:
               
chr1:64251582-64251006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 186
               

               
Conread position:
               
1-578
               

               
Cow position:
               
chr1:79002470-79001887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 205
               

               
Conread position:
               
1-582
               

               
Cow position:
               
chr1:61724533-61723964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
401, 70
               

               
Conread position:
               
1-584
               

               
Cow position:
               
chr1:71045216-71045811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 204
               

               
Conread position:
               
1-590
               

               
Cow position:
               
chr1:24236030-24235457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
378, 84
               

               
Conread position:
               
1-592
               

               
Cow position:
               
chr1:57640015-57639451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
1-595
               

               
Cow position:
               
chr1:76020193-76019629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 83
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr1:45289381-45288801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
376, 115
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr1:52753689-52753090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 177
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr1:53424674-53425247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 15
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr1:68951130-68951695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 9
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr1:89349463-89350035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 188
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr1:95176421-95177008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
374, 187
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr1:96478182-96478770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 52
               

               
Conread position:
               
1-632
               

               
Cow position:
               
chr1:20385139-20384524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 183
               

               
Conread position:
               
1-644
               

               
Cow position:
               
chr1:54199892-54199259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 5
               

               
Conread position:
               
1-645
               

               
Cow position:
               
chr1:23634409-23633793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 85
               

               
Conread position:
               
1-654
               

               
Cow position:
               
chr1:100325249-100324619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 140
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chr1:92962870-92963548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 197
               

               
Conread position:
               
1-706
               

               
Cow position:
               
chr1:89742525-89741806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
356, 130
               

               
Conread position:
               
1-712
               

               
Cow position:
               
chr1:98551207-98551916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 155
               

               
Conread position:
               
1-730
               

               
Cow position:
               
chr1:55357800-55357093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 189
               

               
Conread position:
               
1-740
               

               
Cow position:
               
chr1:22629145-22628450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
743
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
1-740
               

               
Cow position:
               
chr1:53373933-53374633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 105
               

               
Conread position:
               
1-742
               

               
Cow position:
               
chr1:22728534-22729261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 192
               

               
Conread position:
               
1-742
               

               
Cow position:
               
chr1:100450705-100449984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 112
               

               
Conread position:
               
1-743
               

               
Cow position:
               
chr1:61006072-61005348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
760
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
374, 88
               

               
Conread position:
               
1-743
               

               
Cow position:
               
chr1:68854678-68855375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
535, 125
               

               
Conread position:
               
1-743
               

               
Cow position:
               
chr1:82937097-82936396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
745
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 8
               

               
Conread position:
               
1-744
               

               
Cow position:
               
chr1:3323340-3324084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
559
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 168
               

               
Conread position:
               
1-744
               

               
Cow position:
               
chr1:53520393-53521115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 51
               

               
Conread position:
               
1-746
               

               
Cow position:
               
chr1:21786804-21787536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 174
               

               
Conread position:
               
1-747
               

               
Cow position:
               
chr1:57576280-57575551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
764
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
1-757
               

               
Cow position:
               
chr1:874125-874886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
553
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 187
               

               
Conread position:
               
1-757
               

               
Cow position:
               
chr1:79843956-79844703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
771
               

               
Alignm identity:
               
544
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
450, 52
               

               
Conread position:
               
1-760
               

               
Cow position:
               
chr1:52434769-52435501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
539
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 187
               

               
Conread position:
               
1-761
               

               
Cow position:
               
chr1:20002770-20002008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
789
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 111
               

               
Conread position:
               
1-762
               

               
Cow position:
               
chr1:94227060-94226318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
772
               

               
Alignm identity:
               
553
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 34
               

               
Conread position:
               
1-763
               

               
Cow position:
               
chr1:60033116-60032385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
768
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 187
               

               
Conread position:
               
1-764
               

               
Cow position:
               
chr1:43353163-43352423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
772
               

               
Alignm identity:
               
544
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 114
               

               
Conread position:
               
1-764
               

               
Cow position:
               
chr1:79590584-79591337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
780
               

               
Alignm identity:
               
575
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 181
               

               
Conread position:
               
1-765
               

               
Cow position:
               
chr1:97231467-97232202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 47
               

               
Conread position:
               
1-766
               

               
Cow position:
               
chr1:21092578-21093349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
794
               

               
Alignm identity:
               
558
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
372, 180
               

               
Conread position:
               
1-773
               

               
Cow position:
               
chr1:54207336-54206576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
788
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 198
               

               
Conread position:
               
1-773
               

               
Cow position:
               
chr1:72012320-72011582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
781
               

               
Alignm identity:
               
547
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 186
               

               
Conread position:
               
5-462
               

               
Cow position:
               
chr1:33716711-33717165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 173
               

               
Conread position:
               
5-496
               

               
Cow position:
               
chr1:81180491-81180001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 102
               

               
Conread position:
               
5-515
               

               
Cow position:
               
chr1:42053833-42053342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
414, 161
               

               
Conread position:
               
5-515
               

               
Cow position:
               
chr1:96184517-96184029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 82
               

               
Conread position:
               
5-550
               

               
Cow position:
               
chr1:67290363-67290884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
382, 39
               

               
Conread position:
               
5-598
               

               
Cow position:
               
chr1:26702707-26702137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
396, 179
               

               
Conread position:
               
5-598
               

               
Cow position:
               
chr1:37310026-37309449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 185
               

               
Conread position:
               
5-600
               

               
Cow position:
               
chr1:71135636-71136225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 195
               

               
Conread position:
               
5-645
               

               
Cow position:
               
chr1:76223201-76222585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
451, 176
               

               
Conread position:
               
5-665
               

               
Cow position:
               
chr1:74821940-74822581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 187
               

               
Conread position:
               
5-725
               

               
Cow position:
               
chr1:48731346-48730617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 185
               

               
Conread position:
               
5-741
               

               
Cow position:
               
chr1:96963818-96964526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
743
               

               
Alignm identity:
               
539
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
451, 76
               

               
Conread position:
               
5-747
               

               
Cow position:
               
chr1:11914379-11913668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 48
               

               
Conread position:
               
5-749
               

               
Cow position:
               
chr1:26896322-26895597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 30
               

               
Conread position:
               
5-772
               

               
Cow position:
               
chr1:77620036-77620787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 183
               

               
Conread position:
               
6-654
               

               
Cow position:
               
chr1:100400698-100400065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 91
               

               
Conread position:
               
6-669
               

               
Cow position:
               
chr1:53308907-53308250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 116
               

               
Conread position:
               
6-722
               

               
Cow position:
               
chr1:11728679-11729359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 72
               

               
Conread position:
               
7-546
               

               
Cow position:
               
chr1:58419416-58419954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 142
               

               
Conread position:
               
7-748
               

               
Cow position:
               
chr1:56619193-56618443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 127
               

               
Conread position:
               
7-765
               

               
Cow position:
               
chr1:68275916-68276651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
773
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 93
               

               
Conread position:
               
8-524
               

               
Cow position:
               
chr1:101008110-101007624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
448, 76
               

               
Conread position:
               
9-498
               

               
Cow position:
               
chr1:15311357-15311841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 184
               

               
Conread position:
               
9-558
               

               
Cow position:
               
chr1:5162572-5162014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 53
               

               
Conread position:
               
9-567
               

               
Cow position:
               
chr1:28176513-28177047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 50
               

               
Conread position:
               
9-599
               

               
Cow position:
               
chr1:42554750-42555337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 68
               

               
Conread position:
               
10-638
               

               
Cow position:
               
chr1:95018022-95017419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 25
               

               
Conread position:
               
10-751
               

               
Cow position:
               
chr1:15546969-15547683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
745
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
441, 67
               

               
Conread position:
               
12-482
               

               
Cow position:
               
chr1:54732943-54732511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
444, 64
               

               
Conread position:
               
12-740
               

               
Cow position:
               
chr1:51393918-51394624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
743
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 40
               

               
Conread position:
               
13-548
               

               
Cow position:
               
chr1:4589982-4589458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
343, 167
               

               
Conread position:
               
16-598
               

               
Cow position:
               
chr1:4032145-4032702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 171
               

               
Conread position:
               
16-742
               

               
Cow position:
               
chr1:84812449-84811733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
743
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 165
               

               
Conread position:
               
17-437
               

               
Cow position:
               
chr1:77648450-77648021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 60
               

               
Conread position:
               
17-567
               

               
Cow position:
               
chr1:43380505-43379985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 32
               

               
Conread position:
               
17-741
               

               
Cow position:
               
chr1:68818310-68817595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 39
               

               
Conread position:
               
17-761
               

               
Cow position:
               
chr1:20001249-20000529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
17-762
               

               
Cow position:
               
chr1:72069329-72068606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
549
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 172
               

               
Conread position:
               
24-760
               

               
Cow position:
               
chr1:11226736-11226002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 125
               

               
Conread position:
               
38-742
               

               
Cow position:
               
chr1:81569512-81568820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 39
               

               
Conread position:
               
39-598
               

               
Cow position:
               
chr1:61735916-61735365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 20
               

               
Conread position:
               
41-767
               

               
Cow position:
               
chr1:63596532-63595820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
336, 98
               

               
Conread position:
               
43-601
               

               
Cow position:
               
chr1:10719950-10719406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 36
               

               
Conread position:
               
43-767
               

               
Cow position:
               
chr1:73584893-73584173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 34
               

               
Conread position:
               
46-744
               

               
Cow position:
               
chr1:101822964-101822295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 7
               

               
Conread position:
               
47-765
               

               
Cow position:
               
chr1:99642827-99642140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 115
               

               
Conread position:
               
48-551
               

               
Cow position:
               
chr1:665905-666389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 29
               

               
Conread position:
               
49-598
               

               
Cow position:
               
chr1:34301034-34300481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 40
               

               
Conread position:
               
49-756
               

               
Cow position:
               
chr1:63391238-63390540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
374, 139
               

               
Conread position:
               
53-597
               

               
Cow position:
               
chr1:57525275-57524748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
403, 18
               

               
Conread position:
               
57-742
               

               
Cow position:
               
chr1:80336699-80336009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
724
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
58-517
               

               
Cow position:
               
chr1:8532671-8532220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
61-759
               

               
Cow position:
               
chr1:52496324-52496992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 124
               

               
Conread position:
               
64-566
               

               
Cow position:
               
chr1:1801693-1802176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 108
               

               
Conread position:
               
64-598
               

               
Cow position:
               
chr1:101551000-101551533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
65-596
               

               
Cow position:
               
chr1:99808185-99807648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 52
               

               
Conread position:
               
65-761
               

               
Cow position:
               
chr1:93499173-93499844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 119
               

               
Conread position:
               
65-765
               

               
Cow position:
               
chr1:78091582-78092272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 119
               

               
Conread position:
               
66-673
               

               
Cow position:
               
chr1:90868876-90868283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
391, 66
               

               
Conread position:
               
72-554
               

               
Cow position:
               
chr1:78783108-78783574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 7
               

               
Conread position:
               
73-745
               

               
Cow position:
               
chr1:86113846-86113185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 11
               

               
Conread position:
               
73-763
               

               
Cow position:
               
chr1:81228771-81228107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 68
               

               
Conread position:
               
75-759
               

               
Cow position:
               
chr1:11772513-11771858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 9
               

               
Conread position:
               
76-739
               

               
Cow position:
               
chr1:54258133-54258774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
429, 105
               

               
Conread position:
               
79-743
               

               
Cow position:
               
chr1:2075762-2075141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
377, 32
               

               
Conread position:
               
80-561
               

               
Cow position:
               
chr1:88970644-88971088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
82-515
               

               
Cow position:
               
chr1:57698891-57698458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 114
               

               
Conread position:
               
83-771
               

               
Cow position:
               
chr1:81290089-81290739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 109
               

               
Conread position:
               
84-758
               

               
Cow position:
               
chr1:22730333-22730956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
372, 67
               

               
Conread position:
               
85-570
               

               
Cow position:
               
chr1:21460439-21460916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 104
               

               
Conread position:
               
85-642
               

               
Cow position:
               
chr1:3137507-3138047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 26
               

               
Conread position:
               
85-771
               

               
Cow position:
               
chr1:31765823-31765135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 63
               

               
Conread position:
               
86-768
               

               
Cow position:
               
chr1:83082574-83083228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 104
               

               
Conread position:
               
87-739
               

               
Cow position:
               
chr1:41181414-41182041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 101
               

               
Conread position:
               
90-598
               

               
Cow position:
               
chr1:41252848-41252340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 76
               

               
Conread position:
               
90-752
               

               
Cow position:
               
chr1:10778149-10778772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 78
               

               
Conread position:
               
91-455
               

               
Cow position:
               
chr1:24202153-24201818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 77
               

               
Conread position:
               
92-759
               

               
Cow position:
               
chr1:38278454-38277801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 34
               

               
Conread position:
               
93-760
               

               
Cow position:
               
chr1:31934085-31934730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 86
               

               
Conread position:
               
96-762
               

               
Cow position:
               
chr1:72035348-72034700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 88
               

               
Conread position:
               
96-765
               

               
Cow position:
               
chr1:13548411-13547754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 52
               

               
Conread position:
               
100-765
               

               
Cow position:
               
chr1:102350184-102349528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 92
               

               
Conread position:
               
111-740
               

               
Cow position:
               
chr1:102266676-102266064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
112-761
               

               
Cow position:
               
chr1:61392196-61391570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 72
               

               
Conread position:
               
113-598
               

               
Cow position:
               
chr1:102519272-102519726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 74
               

               
Conread position:
               
113-740
               

               
Cow position:
               
chr1:74930137-74929502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 71
               

               
Conread position:
               
116-747
               

               
Cow position:
               
chr1:24133462-24132850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 112
               

               
Conread position:
               
118-774
               

               
Cow position:
               
chr1:101915772-101916408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 74
               

               
Conread position:
               
121-491
               

               
Cow position:
               
chr1:20125219-20125580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 31
               

               
Conread position:
               
121-598
               

               
Cow position:
               
chr1:94211840-94212297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
335, 71
               

               
Conread position:
               
123-720
               

               
Cow position:
               
chr1:91817163-91816582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 65
               

               
Conread position:
               
130-594
               

               
Cow position:
               
chr1:102647654-102647207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 51
               

               
Conread position:
               
130-727
               

               
Cow position:
               
chr1:31348817-31348246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 58
               

               
Conread position:
               
131-741
               

               
Cow position:
               
chr1:34159451-34160035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 53
               

               
Conread position:
               
131-745
               

               
Cow position:
               
chr1:48105820-48105214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 47
               

               
Conread position:
               
135-589
               

               
Cow position:
               
chr1:43821996-43822465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 58
               

               
Conread position:
               
136-754
               

               
Cow position:
               
chr1:12222985-12222381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 49
               

               
Conread position:
               
137-747
               

               
Cow position:
               
chr1:8244-8831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 48
               

               
Conread position:
               
139-472
               

               
Cow position:
               
chr1:83943721-83943399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 45
               

               
Conread position:
               
139-745
               

               
Cow position:
               
chr1:69695384-69694796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 43
               

               
Conread position:
               
140-727
               

               
Cow position:
               
chr1:82884760-82884183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 52
               

               
Conread position:
               
141-752
               

               
Cow position:
               
chr1:35162035-35162623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 34
               

               
Conread position:
               
146-763
               

               
Cow position:
               
chr1:36997828-36998410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 37
               

               
Conread position:
               
148-741
               

               
Cow position:
               
chr1:69539330-69539892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 36
               

               
Conread position:
               
148-747
               

               
Cow position:
               
chr1:53622595-53623169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 105
               

               
Conread position:
               
149-574
               

               
Cow position:
               
chr1:90640666-90641083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 35
               

               
Conread position:
               
150-765
               

               
Cow position:
               
chr1:91066513-91065926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 34
               

               
Conread position:
               
151-763
               

               
Cow position:
               
chr1:52329891-52329290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 37
               

               
Conread position:
               
158-766
               

               
Cow position:
               
chr1:100551605-100552196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 26
               

               
Conread position:
               
160-533
               

               
Cow position:
               
chr1:22467573-22467942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 28
               

               
Conread position:
               
162-760
               

               
Cow position:
               
chr1:21508038-21508619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 18
               

               
Conread position:
               
164-579
               

               
Cow position:
               
chr1:100771085-100770701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 24
               

               
Conread position:
               
172-512
               

               
Cow position:
               
chr1:45673359-45673695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
284, 168
               

               
Conread position:
               
172-740
               

               
Cow position:
               
chr1:102756764-102756230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 5
               

               
Conread position:
               
172-763
               

               
Cow position:
               
chr1:69264478-69265056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
428, 9
               

               
Conread position:
               
201-526
               

               
Cow position:
               
chr1:57901056-57900743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 58
               

               
Conread position:
               
201-740
               

               
Cow position:
               
chr1:42887580-42887074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 42
               

               
Conread position:
               
202-500
               

               
Cow position:
               
chr1:732243-731968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
202-555
               

               
Cow position:
               
chr1:5873291-5872940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 100
               

               
Conread position:
               
202-570
               

               
Cow position:
               
chr1:44125967-44125593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
89, 168
               

               
Conread position:
               
202-596
               

               
Cow position:
               
chr1:85596628-85597006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 72
               

               
Conread position:
               
202-598
               

               
Cow position:
               
chr1:95215494-95215120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 20
               

               
Conread position:
               
202-716
               

               
Cow position:
               
chr1:70296950-70297464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 77
               

               
Conread position:
               
202-727
               

               
Cow position:
               
chr1:100740969-100741475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
62, 105
               

               
Conread position:
               
202-736
               

               
Cow position:
               
chr1:23488828-23488301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 50
               

               
Conread position:
               
202-750
               

               
Cow position:
               
chr1:48444496-48443975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 50
               

               
Conread position:
               
204-644
               

               
Cow position:
               
chr1:23969351-23968924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 58
               

               
Conread position:
               
205-740
               

               
Cow position:
               
chr1:95100651-95101157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 40
               

               
Conread position:
               
206-760
               

               
Cow position:
               
chr1:18937147-18936611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 59
               

               
Conread position:
               
208-452
               

               
Cow position:
               
chr1:54596987-54596743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
167, 57
               

               
Conread position:
               
208-567
               

               
Cow position:
               
chr1:73561961-73561608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 62
               

               
Conread position:
               
208-571
               

               
Cow position:
               
chr1:22448896-22448538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 57
               

               
Conread position:
               
208-597
               

               
Cow position:
               
chr1:82226849-82227232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
92, 67
               

               
Conread position:
               
208-716
               

               
Cow position:
               
chr1:98360726-98360195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
208-739
               

               
Cow position:
               
chr1:84282749-84283276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 57
               

               
Conread position:
               
208-745
               

               
Cow position:
               
chr1:96365362-96365860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 57
               

               
Conread position:
               
208-751
               

               
Cow position:
               
chr1:101713803-101714334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 33
               

               
Conread position:
               
208-763
               

               
Cow position:
               
chr1:42256822-42256278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 58
               

               
Conread position:
               
210-598
               

               
Cow position:
               
chr1:39418428-39418041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 63
               

               
Conread position:
               
211-598
               

               
Cow position:
               
chr1:68845789-68845420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 42
               

               
Conread position:
               
211-763
               

               
Cow position:
               
chr1:63435112-63434569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 57
               

               
Conread position:
               
212-564
               

               
Cow position:
               
chr1:47008724-47009069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
213-756
               

               
Cow position:
               
chr1:1877719-1878247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
214-597
               

               
Cow position:
               
chr1:81673758-81674136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
86, 51
               

               
Conread position:
               
215-590
               

               
Cow position:
               
chr1:71257788-71257404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
84, 60
               

               
Conread position:
               
216-550
               

               
Cow position:
               
chr1:33811630-33811952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 56
               

               
Conread position:
               
218-740
               

               
Cow position:
               
chr1:66138018-66138528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 34
               

               
Conread position:
               
220-727
               

               
Cow position:
               
chr1:77720527-77720067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 45
               

               
Conread position:
               
223-598
               

               
Cow position:
               
chr1:100705837-100706196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 36
               

               
Conread position:
               
223-761
               

               
Cow position:
               
chr1:68217657-68217141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 39
               

               
Conread position:
               
224-598
               

               
Cow position:
               
chr1:81613089-81613459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 41
               

               
Conread position:
               
224-741
               

               
Cow position:
               
chr1:33719823-33720311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 17
               

               
Conread position:
               
225-495
               

               
Cow position:
               
chr1:98380872-98380602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 40
               

               
Conread position:
               
226-550
               

               
Cow position:
               
chr1:81472585-81472893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 45
               

               
Conread position:
               
226-745
               

               
Cow position:
               
chr1:29627209-29626701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 39
               

               
Conread position:
               
227-666
               

               
Cow position:
               
chr1:1991723-1991280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 199
               

               
Conread position:
               
236-590
               

               
Cow position:
               
chr1:60907077-60907439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 29
               

               
Conread position:
               
238-555
               

               
Cow position:
               
chr1:34000623-34000937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 27
               

               
Conread position:
               
238-598
               

               
Cow position:
               
chr1:4027579-4027933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 27
               

               
Conread position:
               
238-701
               

               
Cow position:
               
chr1:634909-635364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 33
               

               
Conread position:
               
238-752
               

               
Cow position:
               
chr1:21954504-21954009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 63
               

               
Conread position:
               
244-462
               

               
Cow position:
               
chr1:32631194-32631404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 29
               

               
Conread position:
               
245-761
               

               
Cow position:
               
chr1:73546190-73545681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 20
               

               
Conread position:
               
246-491
               

               
Cow position:
               
chr1:56711896-56711653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
26, 8
               

               
Conread position:
               
246-730
               

               
Cow position:
               
chr1:13614996-13614547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
17, 54
               

               
Conread position:
               
246-743
               

               
Cow position:
               
chr1:89510206-89509722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
250-741
               

               
Cow position:
               
chr1:25383389-25383876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 59
               

               
Conread position:
               
250-763
               

               
Cow position:
               
chr1:53369798-53370312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 35
               

               
Conread position:
               
257-463
               

               
Cow position:
               
chr1:52488221-52488023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 8
               

               
Conread position:
               
258-742
               

               
Cow position:
               
chr1:54478058-54478524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 165
               

               
Conread position:
               
259-449
               

               
Cow position:
               
chr1:4619131-4618940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
259-598
               

               
Cow position:
               
chr1:72141301-72141645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 43
               

               
Conread position:
               
259-606
               

               
Cow position:
               
chr1:80899845-80900198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
116, 43
               

               
Conread position:
               
259-744
               

               
Cow position:
               
chr1:21835685-21836172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 39
               

               
Conread position:
               
259-744
               

               
Cow position:
               
chr1:99609103-99609577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 43
               

               
Conread position:
               
259-746
               

               
Cow position:
               
chr1:82338048-82337568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 40
               

               
Conread position:
               
259-761
               

               
Cow position:
               
chr1:101834577-101835043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 41
               

               
Conread position:
               
259-766
               

               
Cow position:
               
chr1:75744597-75745090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 40
               

               
Conread position:
               
259-768
               

               
Cow position:
               
chr1:48580867-48581365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 39
               

               
Conread position:
               
259-773
               

               
Cow position:
               
chr1:57297235-57297747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 14
               

               
Conread position:
               
260-510
               

               
Cow position:
               
chr1:31871158-31871408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
115, 39
               

               
Conread position:
               
260-599
               

               
Cow position:
               
chr1:31390846-31390517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
182, 31
               

               
Conread position:
               
260-673
               

               
Cow position:
               
chr1:77880977-77880581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
58, 42
               

               
Conread position:
               
261-598
               

               
Cow position:
               
chr1:4290897-4291234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 23
               

               
Conread position:
               
262-515
               

               
Cow position:
               
chr1:84116142-84116383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
193, 40
               

               
Conread position:
               
263-553
               

               
Cow position:
               
chr1:24655701-24655985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 36
               

               
Conread position:
               
265-555
               

               
Cow position:
               
chr1:38544704-38544437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
191, 34
               

               
Conread position:
               
265-598
               

               
Cow position:
               
chr1:60707146-60707473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 34
               

               
Conread position:
               
265-654
               

               
Cow position:
               
chr1:19482331-19481960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
191, 34
               

               
Conread position:
               
265-743
               

               
Cow position:
               
chr1:68619194-68618731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 34
               

               
Conread position:
               
265-746
               

               
Cow position:
               
chr1:79165349-79164871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 34
               

               
Conread position:
               
265-748
               

               
Cow position:
               
chr1:43505266-43505738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 34
               

               
Conread position:
               
265-754
               

               
Cow position:
               
chr1:76470402-76470876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 34
               

               
Conread position:
               
265-759
               

               
Cow position:
               
chr1:90864557-90864066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 34
               

               
Conread position:
               
265-764
               

               
Cow position:
               
chr1:13413770-13414252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 40
               

               
Conread position:
               
266-577
               

               
Cow position:
               
chr1:45535446-45535756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 33
               

               
Conread position:
               
266-727
               

               
Cow position:
               
chr1:34856885-34856432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
266-728
               

               
Cow position:
               
chr1:100761835-100762268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
190, 33
               

               
Conread position:
               
266-742
               

               
Cow position:
               
chr1:68827161-68826716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 36
               

               
Conread position:
               
266-743
               

               
Cow position:
               
chr1:61884659-61885121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 33
               

               
Conread position:
               
266-746
               

               
Cow position:
               
chr1:29935637-29935179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 39
               

               
Conread position:
               
268-590
               

               
Cow position:
               
chr1:57396183-57395874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 122
               

               
Conread position:
               
269-739
               

               
Cow position:
               
chr1:6103166-6102695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 33
               

               
Conread position:
               
270-562
               

               
Cow position:
               
chr1:32244651-32244361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
105, 29
               

               
Conread position:
               
270-600
               

               
Cow position:
               
chr1:2765165-2765486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
136, 32
               

               
Conread position:
               
272-598
               

               
Cow position:
               
chr1:89485341-89485650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 30
               

               
Conread position:
               
273-598
               

               
Cow position:
               
chr1:1185490-1185799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
92, 26
               

               
Conread position:
               
273-757
               

               
Cow position:
               
chr1:70538354-70538829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 26
               

               
Conread position:
               
273-759
               

               
Cow position:
               
chr1:78857571-78857102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 30
               

               
Conread position:
               
273-761
               

               
Cow position:
               
chr1:3924043-3923578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 26
               

               
Conread position:
               
273-767
               

               
Cow position:
               
chr1:5023989-5023501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
330, 26
               

               
Conread position:
               
274-462
               

               
Cow position:
               
chr1:74013515-74013322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
103, 28
               

               
Conread position:
               
274-491
               

               
Cow position:
               
chr1:81363746-81363956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
182, 25
               

               
Conread position:
               
274-491
               

               
Cow position:
               
chr1:89395343-89395567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
274-506
               

               
Cow position:
               
chr1:52506792-52506575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
182, 25
               

               
Conread position:
               
274-508
               

               
Cow position:
               
chr1:49839258-49839488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 25
               

               
Conread position:
               
274-513
               

               
Cow position:
               
chr1:29901205-29900989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
274-550
               

               
Cow position:
               
chr1:3776862-3776597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 28
               

               
Conread position:
               
274-550
               

               
Cow position:
               
chr1:50679534-50679257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 25
               

               
Conread position:
               
274-598
               

               
Cow position:
               
chr1:5135939-5135640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
274-623
               

               
Cow position:
               
chr1:78791555-78791210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
99, 25
               

               
Conread position:
               
274-720
               

               
Cow position:
               
chr1:93528442-93528880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 28
               

               
Conread position:
               
274-721
               

               
Cow position:
               
chr1:6958631-6959066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 28
               

               
Conread position:
               
274-727
               

               
Cow position:
               
chr1:6941218-6941659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 28
               

               
Conread position:
               
274-742
               

               
Cow position:
               
chr1:74084437-74083980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 25
               

               
Conread position:
               
274-758
               

               
Cow position:
               
chr1:197250-196781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 25
               

               
Conread position:
               
274-758
               

               
Cow position:
               
chr1:65103387-65103852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 25
               

               
Conread position:
               
275-759
               

               
Cow position:
               
chr1:50931216-50930756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 18
               

               
Conread position:
               
275-764
               

               
Cow position:
               
chr1:56477348-56477814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 27
               

               
Conread position:
               
276-553
               

               
Cow position:
               
chr1:56748344-56748626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 26
               

               
Conread position:
               
276-555
               

               
Cow position:
               
chr1:63905720-63905446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 23
               

               
Conread position:
               
276-588
               

               
Cow position:
               
chr1:81319044-81319352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
80, 26
               

               
Conread position:
               
276-598
               

               
Cow position:
               
chr1:51531527-51531821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
180, 26
               

               
Conread position:
               
276-598
               

               
Cow position:
               
chr1:81868973-81868659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
276-639
               

               
Cow position:
               
chr1:1165354-1165717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 23
               

               
Conread position:
               
276-731
               

               
Cow position:
               
chr1:92369470-92369948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
276-736
               

               
Cow position:
               
chr1:98594325-98594793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 26
               

               
Conread position:
               
276-746
               

               
Cow position:
               
chr1:45555116-45555577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
277-668
               

               
Cow position:
               
chr1:84239352-84238962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 22
               

               
Conread position:
               
277-745
               

               
Cow position:
               
chr1:37322250-37321800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
71, 22
               

               
Conread position:
               
277-746
               

               
Cow position:
               
chr1:49317764-49317289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 165
               

               
Conread position:
               
277-765
               

               
Cow position:
               
chr1:71119266-71119753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
278-598
               

               
Cow position:
               
chr1:56634852-56635168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
178, 108
               

               
Conread position:
               
278-728
               

               
Cow position:
               
chr1:88618348-88618801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
278-741
               

               
Cow position:
               
chr1:10655233-10655684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 21
               

               
Conread position:
               
278-761
               

               
Cow position:
               
chr1:51445635-51446109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 21
               

               
Conread position:
               
279-528
               

               
Cow position:
               
chr1:20799629-20799887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
77, 23
               

               
Conread position:
               
279-745
               

               
Cow position:
               
chr1:3962927-3962465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 20
               

               
Conread position:
               
281-567
               

               
Cow position:
               
chr1:31235175-31234892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
86, 145
               

               
Conread position:
               
281-747
               

               
Cow position:
               
chr1:70434751-70435199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 18
               

               
Conread position:
               
282-600
               

               
Cow position:
               
chr1:62732335-62732645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
282-742
               

               
Cow position:
               
chr1:44506728-44507175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 17
               

               
Conread position:
               
282-764
               

               
Cow position:
               
chr1:7442745-7443211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 20
               

               
Conread position:
               
283-454
               

               
Cow position:
               
chr1:77891574-77891745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
111, 16
               

               
Conread position:
               
283-589
               

               
Cow position:
               
chr1:26729489-26729779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
283-736
               

               
Cow position:
               
chr1:40531348-40530883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
284-594
               

               
Cow position:
               
chr1:24597414-24597721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
91, 15
               

               
Conread position:
               
284-601
               

               
Cow position:
               
chr1:76096201-76096512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
284-747
               

               
Cow position:
               
chr1:4401909-4402361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
16, 22
               

               
Conread position:
               
285-561
               

               
Cow position:
               
chr1:100512359-100512642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 18
               

               
Conread position:
               
286-566
               

               
Cow position:
               
chr1:76044360-76044093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
170, 16
               

               
Conread position:
               
288-768
               

               
Cow position:
               
chr1:70227936-70227456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
290-635
               

               
Cow position:
               
chr1:43448058-43447722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
290-739
               

               
Cow position:
               
chr1:81515006-81515444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
290-746
               

               
Cow position:
               
chr1:64302466-64302039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
166, 12
               

               
Conread position:
               
291-765
               

               
Cow position:
               
chr1:43358248-43357771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 200
               

               
Conread position:
               
292-595
               

               
Cow position:
               
chr1:19885149-19885448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 137
               

               
Conread position:
               
292-726
               

               
Cow position:
               
chr1:89381046-89381466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
164, 53
               

               
Conread position:
               
293-554
               

               
Cow position:
               
chr1:4293831-4294086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
163, 93
               

               
Conread position:
               
293-725
               

               
Cow position:
               
chr1:72103617-72104045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
130, 22
               

               
Conread position:
               
293-740
               

               
Cow position:
               
chr1:89076867-89076417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 43
               

               
Conread position:
               
294-740
               

               
Cow position:
               
chr1:64804337-64803891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 8
               

               
Conread position:
               
295-584
               

               
Cow position:
               
chr1:73761581-73761297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
161, 80
               

               
Conread position:
               
295-618
               

               
Cow position:
               
chr1:79278671-79278357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 40
               

               
Conread position:
               
295-765
               

               
Cow position:
               
chr1:55705483-55705016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 136
               

               
Conread position:
               
296-598
               

               
Cow position:
               
chr1:52052932-52052647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
160, 87
               

               
Conread position:
               
296-745
               

               
Cow position:
               
chr1:10942320-10941887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 90
               

               
Conread position:
               
296-745
               

               
Cow position:
               
chr1:10964066-10964499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 90
               

               
Conread position:
               
296-779
               

               
Cow position:
               
chr1:24729068-24728584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 54
               

               
Conread position:
               
297-601
               

               
Cow position:
               
chr1:69415945-69415636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
78, 143
               

               
Conread position:
               
299-489
               

               
Cow position:
               
chr1:26200995-26201183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
157, 121
               

               
Conread position:
               
299-720
               

               
Cow position:
               
chr1:71079182-71078776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 121
               

               
Conread position:
               
299-721
               

               
Cow position:
               
chr1:43389273-43388867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 96
               

               
Conread position:
               
299-747
               

               
Cow position:
               
chr1:87072479-87072907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 121
               

               
Conread position:
               
301-555
               

               
Cow position:
               
chr1:98558007-98557760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
69, 147
               

               
Conread position:
               
301-744
               

               
Cow position:
               
chr1:34771727-34771289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 62
               

               
Conread position:
               
302-598
               

               
Cow position:
               
chr1:7186565-7186858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
63, 173
               

               
Conread position:
               
302-727
               

               
Cow position:
               
chr1:78809661-78810073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 84
               

               
Conread position:
               
302-753
               

               
Cow position:
               
chr1:70422078-70422521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 126
               

               
Conread position:
               
303-745
               

               
Cow position:
               
chr1:52956038-52956491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 74
               

               
Conread position:
               
304-598
               

               
Cow position:
               
chr1:7971210-7971482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
152, 63
               

               
Conread position:
               
304-742
               

               
Cow position:
               
chr1:8287833-8287423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 6
               

               
Conread position:
               
305-750
               

               
Cow position:
               
chr1:15333661-15334105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
305-764
               

               
Cow position:
               
chr1:6305088-6304646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 190
               

               
Conread position:
               
306-597
               

               
Cow position:
               
chr1:98310842-98311141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 184
               

               
Conread position:
               
306-743
               

               
Cow position:
               
chr1:49433483-49433052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 87
               

               
Conread position:
               
309-560
               

               
Cow position:
               
chr1:68995956-68996212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
66, 191
               

               
Conread position:
               
311-598
               

               
Cow position:
               
chr1:40482625-40482342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
96, 21
               

               
Conread position:
               
312-740
               

               
Cow position:
               
chr1:16962226-16961788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 116
               

               
Conread position:
               
313-735
               

               
Cow position:
               
chr1:43872543-43872108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
315-563
               

               
Cow position:
               
chr1:246194-246440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
141, 109
               

               
Conread position:
               
315-598
               

               
Cow position:
               
chr1:95654925-95654643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 111
               

               
Conread position:
               
315-743
               

               
Cow position:
               
chr1:68862826-68863228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 47
               

               
Conread position:
               
315-761
               

               
Cow position:
               
chr1:90976292-90975849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 52
               

               
Conread position:
               
317-766
               

               
Cow position:
               
chr1:86110928-86110516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
318-583
               

               
Cow position:
               
chr1:98372422-98372687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
57, 148
               

               
Conread position:
               
318-768
               

               
Cow position:
               
chr1:70094131-70094572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
59, 110
               

               
Conread position:
               
319-544
               

               
Cow position:
               
chr1:32013751-32013970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
70, 54
               

               
Conread position:
               
319-554
               

               
Cow position:
               
chr1:47884038-47883791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
56, 186
               

               
Conread position:
               
319-590
               

               
Cow position:
               
chr1:101867150-101867412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
191, 63
               

               
Conread position:
               
319-598
               

               
Cow position:
               
chr1:75141801-75142067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
319-725
               

               
Cow position:
               
chr1:6867686-6867271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 143
               

               
Conread position:
               
320-749
               

               
Cow position:
               
chr1:98619002-98619418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
55, 10
               

               
Conread position:
               
320-751
               

               
Cow position:
               
chr1:5858895-5858454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
321-770
               

               
Cow position:
               
chr1:86279211-86279653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 70
               

               
Conread position:
               
322-450
               

               
Cow position:
               
chr1:99570667-99570541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
322-591
               

               
Cow position:
               
chr1:9166975-9166715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
90, 49
               

               
Conread position:
               
322-598
               

               
Cow position:
               
chr1:69127370-69127096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
29, 121
               

               
Conread position:
               
322-760
               

               
Cow position:
               
chr1:28563771-28563335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 143
               

               
Conread position:
               
322-764
               

               
Cow position:
               
chr1:46030555-46030134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 49
               

               
Conread position:
               
322-767
               

               
Cow position:
               
chr1:63138636-63139077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 171
               

               
Conread position:
               
323-649
               

               
Cow position:
               
chr1:43340824-43340493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 179
               

               
Conread position:
               
323-743
               

               
Cow position:
               
chr1:5597400-5597003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
324-491
               

               
Cow position:
               
chr1:49753730-49753894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
132, 95
               

               
Conread position:
               
324-597
               

               
Cow position:
               
chr1:94261347-94261605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
132, 55
               

               
Conread position:
               
325-486
               

               
Cow position:
               
chr1:7449933-7450091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
131, 48
               

               
Conread position:
               
325-561
               

               
Cow position:
               
chr1:81470929-81471166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
49, 100
               

               
Conread position:
               
325-567
               

               
Cow position:
               
chr1:32001520-32001275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
131, 66
               

               
Conread position:
               
325-593
               

               
Cow position:
               
chr1:82443656-82443390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 97
               

               
Conread position:
               
325-764
               

               
Cow position:
               
chr1:84906267-84905830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 115
               

               
Conread position:
               
328-746
               

               
Cow position:
               
chr1:40192874-40192491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
308, 34
               

               
Conread position:
               
329-598
               

               
Cow position:
               
chr1:51654215-51654494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
127, 93
               

               
Conread position:
               
329-736
               

               
Cow position:
               
chr1:65025061-65025463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
14, 284
               

               
Conread position:
               
329-765
               

               
Cow position:
               
chr1:70343844-70344275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
331-728
               

               
Cow position:
               
chr1:49082529-49082940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 189
               

               
Conread position:
               
332-547
               

               
Cow position:
               
chr1:56674322-56674107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
332-591
               

               
Cow position:
               
chr1:60094853-60095103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
332-598
               

               
Cow position:
               
chr1:97778802-97779062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
43, 130
               

               
Conread position:
               
332-599
               

               
Cow position:
               
chr1:70026534-70026274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
124, 30
               

               
Conread position:
               
332-760
               

               
Cow position:
               
chr1:83072251-83072665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 89
               

               
Conread position:
               
333-752
               

               
Cow position:
               
chr1:25734662-25735086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 172
               

               
Conread position:
               
333-764
               

               
Cow position:
               
chr1:13810457-13810883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
44, 112
               

               
Conread position:
               
334-598
               

               
Cow position:
               
chr1:91039367-91039104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
41, 124
               

               
Conread position:
               
335-763
               

               
Cow position:
               
chr1:71227887-71228324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 168
               

               
Conread position:
               
336-598
               

               
Cow position:
               
chr1:43703226-43703479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
120, 19
               

               
Conread position:
               
336-740
               

               
Cow position:
               
chr1:81579986-81580416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
66, 12
               

               
Conread position:
               
336-757
               

               
Cow position:
               
chr1:57880981-57880560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 175
               

               
Conread position:
               
336-765
               

               
Cow position:
               
chr1:54156929-54156504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
338-477
               

               
Cow position:
               
chr1:63530394-63530526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
338-490
               

               
Cow position:
               
chr1:89082921-89083075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 86
               

               
Conread position:
               
338-749
               

               
Cow position:
               
chr1:42398383-42397981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 157
               

               
Conread position:
               
339-598
               

               
Cow position:
               
chr1:31608084-31607819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
26, 154
               

               
Conread position:
               
340-599
               

               
Cow position:
               
chr1:75933088-75933337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
116, 83
               

               
Conread position:
               
340-741
               

               
Cow position:
               
chr1:86578764-86579180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
340-742
               

               
Cow position:
               
chr1:68763866-68763476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 82
               

               
Conread position:
               
340-744
               

               
Cow position:
               
chr1:484650-484253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 46
               

               
Conread position:
               
341-598
               

               
Cow position:
               
chr1:73682420-73682172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
342-589
               

               
Cow position:
               
chr1:24445811-24445567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
342-744
               

               
Cow position:
               
chr1:65318399-65318787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
342-748
               

               
Cow position:
               
chr1:24778161-24777770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 35
               

               
Conread position:
               
344-597
               

               
Cow position:
               
chr1:65905188-65904929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
344-598
               

               
Cow position:
               
chr1:101701827-101701577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 114
               

               
Conread position:
               
345-747
               

               
Cow position:
               
chr1:20667921-20667538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 76
               

               
Conread position:
               
346-567
               

               
Cow position:
               
chr1:80631520-80631738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 110
               

               
Conread position:
               
348-597
               

               
Cow position:
               
chr1:57420906-57420662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
349-752
               

               
Cow position:
               
chr1:85688010-85688403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
350-539
               

               
Cow position:
               
chr1:32596279-32596468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 144
               

               
Conread position:
               
350-599
               

               
Cow position:
               
chr1:42545958-42545708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
104, 36
               

               
Conread position:
               
350-743
               

               
Cow position:
               
chr1:90621689-90621297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
25, 76
               

               
Conread position:
               
350-765
               

               
Cow position:
               
chr1:101866669-101866267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
149, 13
               

               
Conread position:
               
352-598
               

               
Cow position:
               
chr1:24876093-24876332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
152, 100
               

               
Conread position:
               
353-765
               

               
Cow position:
               
chr1:33207041-33206640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 15
               

               
Conread position:
               
354-598
               

               
Cow position:
               
chr1:95178785-95179024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
102, 32
               

               
Conread position:
               
354-705
               

               
Cow position:
               
chr1:77133589-77133948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
354-747
               

               
Cow position:
               
chr1:22525710-22526086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
354-761
               

               
Cow position:
               
chr1:55429125-55428726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 8
               

               
Conread position:
               
354-762
               

               
Cow position:
               
chr1:7748043-7748444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
21, 144
               

               
Conread position:
               
354-762
               

               
Cow position:
               
chr1:7752209-7752608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
21, 144
               

               
Conread position:
               
355-550
               

               
Cow position:
               
chr1:81638233-81638427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
52, 134
               

               
Conread position:
               
355-598
               

               
Cow position:
               
chr1:101632508-101632267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
355-742
               

               
Cow position:
               
chr1:101280885-101280530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 66
               

               
Conread position:
               
355-746
               

               
Cow position:
               
chr1:59518751-59519123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
101, 66
               

               
Conread position:
               
355-747
               

               
Cow position:
               
chr1:87095399-87095000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 7
               

               
Conread position:
               
355-766
               

               
Cow position:
               
chr1:44075879-44075492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
367, 32
               

               
Conread position:
               
356-579
               

               
Cow position:
               
chr1:92926556-92926778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
56, 144
               

               
Conread position:
               
356-747
               

               
Cow position:
               
chr1:51417608-51417978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
104, 35
               

               
Conread position:
               
358-567
               

               
Cow position:
               
chr1:5579895-5580100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
98, 15
               

               
Conread position:
               
358-764
               

               
Cow position:
               
chr1:49077509-49077096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
65, 143
               

               
Conread position:
               
359-599
               

               
Cow position:
               
chr1:9013363-9013607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 141
               

               
Conread position:
               
359-764
               

               
Cow position:
               
chr1:25386886-25387278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
64, 23
               

               
Conread position:
               
360-722
               

               
Cow position:
               
chr1:101836881-101837243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
360-731
               

               
Cow position:
               
chr1:19568688-19569052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
96, 47
               

               
Conread position:
               
360-736
               

               
Cow position:
               
chr1:38753753-38754119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
65, 134
               

               
Conread position:
               
360-739
               

               
Cow position:
               
chr1:76613295-76612927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
360-743
               

               
Cow position:
               
chr1:95557872-95558248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
218, 62
               

               
Conread position:
               
361-598
               

               
Cow position:
               
chr1:93554680-93554906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
362-599
               

               
Cow position:
               
chr1:60281208-60281444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
95, 61
               

               
Conread position:
               
363-730
               

               
Cow position:
               
chr1:33409789-33409427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
60, 131
               

               
Conread position:
               
364-595
               

               
Cow position:
               
chr1:101946867-101946647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
92, 27
               

               
Conread position:
               
367-760
               

               
Cow position:
               
chr1:70428561-70428965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
82, 39
               

               
Conread position:
               
368-598
               

               
Cow position:
               
chr1:97696584-97696814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
63, 54
               

               
Conread position:
               
368-725
               

               
Cow position:
               
chr1:96081328-96081669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
238, 74
               

               
Conread position:
               
368-741
               

               
Cow position:
               
chr1:22192607-22192977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 54
               

               
Conread position:
               
368-744
               

               
Cow position:
               
chr1:77683201-77683584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
88, 53
               

               
Conread position:
               
368-759
               

               
Cow position:
               
chr1:14309194-14308804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
57, 124
               

               
Conread position:
               
368-760
               

               
Cow position:
               
chr1:83659430-83659049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
55, 88
               

               
Conread position:
               
369-495
               

               
Cow position:
               
chr1:100745451-100745578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
369-725
               

               
Cow position:
               
chr1:98413611-98413967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
51, 111
               

               
Conread position:
               
369-743
               

               
Cow position:
               
chr1:88913162-88913529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
369-762
               

               
Cow position:
               
chr1:42175569-42175959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
87, 52
               

               
Conread position:
               
370-555
               

               
Cow position:
               
chr1:6961754-6961935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
370-559
               

               
Cow position:
               
chr1:51684649-51684838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
86, 16
               

               
Conread position:
               
373-738
               

               
Cow position:
               
chr1:65909375-65909748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 49
               

               
Conread position:
               
373-743
               

               
Cow position:
               
chr1:62519206-62519575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 51
               

               
Conread position:
               
373-747
               

               
Cow position:
               
chr1:68245459-68245064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
373-764
               

               
Cow position:
               
chr1:23186948-23186570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 77
               

               
Conread position:
               
373-765
               

               
Cow position:
               
chr1:86682714-86682336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 48
               

               
Conread position:
               
374-767
               

               
Cow position:
               
chr1:31272591-31272216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
82, 47
               

               
Conread position:
               
375-550
               

               
Cow position:
               
chr1:12988896-12989074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
79, 64
               

               
Conread position:
               
375-742
               

               
Cow position:
               
chr1:20950571-20950925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
5, 47
               

               
Conread position:
               
376-568
               

               
Cow position:
               
chr1:92532555-92532366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 115
               

               
Conread position:
               
377-597
               

               
Cow position:
               
chr1:23512802-23512590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
377-747
               

               
Cow position:
               
chr1:8360046-8359668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
378-747
               

               
Cow position:
               
chr1:19970747-19970381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 46
               

               
Conread position:
               
379-725
               

               
Cow position:
               
chr1:17196773-17196434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
77, 7
               

               
Conread position:
               
380-744
               

               
Cow position:
               
chr1:8129111-8128770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 45
               

               
Conread position:
               
381-591
               

               
Cow position:
               
chr1:83410300-83410508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
73, 41
               

               
Conread position:
               
381-722
               

               
Cow position:
               
chr1:2976138-2975801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
381-761
               

               
Cow position:
               
chr1:78838656-78839011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
383-739
               

               
Cow position:
               
chr1:29451777-29452128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 74
               

               
Conread position:
               
384-728
               

               
Cow position:
               
chr1:47886629-47886286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
35, 111
               

               
Conread position:
               
386-508
               

               
Cow position:
               
chr1:73536598-73536719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
68, 105
               

               
Conread position:
               
386-517
               

               
Cow position:
               
chr1:90595693-90595561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 108
               

               
Conread position:
               
386-571
               

               
Cow position:
               
chr1:30047732-30047555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 36
               

               
Conread position:
               
386-598
               

               
Cow position:
               
chr1:85550216-85550008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 35
               

               
Conread position:
               
386-735
               

               
Cow position:
               
chr1:89448759-89449099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
70, 35
               

               
Conread position:
               
386-747
               

               
Cow position:
               
chr1:92997037-92996673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
386-773
               

               
Cow position:
               
chr1:86340611-86340224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
387-747
               

               
Cow position:
               
chr1:4243480-4243118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
69, 35
               

               
Conread position:
               
387-752
               

               
Cow position:
               
chr1:64572376-64572734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 34
               

               
Conread position:
               
387-767
               

               
Cow position:
               
chr1:38418897-38419259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
213, 18
               

               
Conread position:
               
389-598
               

               
Cow position:
               
chr1:86073459-86073666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
67, 35
               

               
Conread position:
               
389-764
               

               
Cow position:
               
chr1:648188-648557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
67, 34
               

               
Conread position:
               
392-740
               

               
Cow position:
               
chr1:35600429-35600084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
64, 5
               

               
Conread position:
               
393-734
               

               
Cow position:
               
chr1:79640421-79640089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
393-739
               

               
Cow position:
               
chr1:71399148-71399499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
393-740
               

               
Cow position:
               
chr1:6294629-6294287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
30, 47
               

               
Conread position:
               
393-746
               

               
Cow position:
               
chr1:78079596-78079934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
395-549
               

               
Cow position:
               
chr1:10952361-10952205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
27, 100
               

               
Conread position:
               
397-591
               

               
Cow position:
               
chr1:100569024-100569219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 108
               

               
Conread position:
               
397-598
               

               
Cow position:
               
chr1:5539404-5539206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
397-746
               

               
Cow position:
               
chr1:42869063-42868738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
397-757
               

               
Cow position:
               
chr1:72105286-72105623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
59, 8
               

               
Conread position:
               
397-763
               

               
Cow position:
               
chr1:95637702-95638064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
26, 62
               

               
Conread position:
               
399-736
               

               
Cow position:
               
chr1:24909180-24908841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
57, 75
               

               
Conread position:
               
399-739
               

               
Cow position:
               
chr1:73458219-73457889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
399-759
               

               
Cow position:
               
chr1:4701798-4701447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
400-727
               

               
Cow position:
               
chr1:72813488-72813810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
56, 98
               

               
Conread position:
               
401-765
               

               
Cow position:
               
chr1:47790787-47790438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
402-598
               

               
Cow position:
               
chr1:80422154-80422342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
405-746
               

               
Cow position:
               
chr1:67585426-67585763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
20, 206
               

               
Conread position:
               
407-755
               

               
Cow position:
               
chr1:10716382-10716728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
407-765
               

               
Cow position:
               
chr1:81477989-81477633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 50
               

               
Conread position:
               
408-550
               

               
Cow position:
               
chr1:70291451-70291591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
102, 86
               

               
Conread position:
               
408-598
               

               
Cow position:
               
chr1:3352812-3352630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 58
               

               
Conread position:
               
408-740
               

               
Cow position:
               
chr1:31795121-31794802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
409-758
               

               
Cow position:
               
chr1:37726532-37726190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
191, 45
               

               
Conread position:
               
410-630
               

               
Cow position:
               
chr1:87936783-87937004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
411-631
               

               
Cow position:
               
chr1:4180736-4180517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
412-725
               

               
Cow position:
               
chr1:79660516-79660210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
44, 80
               

               
Conread position:
               
413-596
               

               
Cow position:
               
chr1:78697882-78697704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
413-742
               

               
Cow position:
               
chr1:30189033-30189365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 194
               

               
Conread position:
               
414-567
               

               
Cow position:
               
chr1:22394683-22394842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
414-599
               

               
Cow position:
               
chr1:61543030-61542848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 80
               

               
Conread position:
               
414-746
               

               
Cow position:
               
chr1:66898609-66898282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
414-747
               

               
Cow position:
               
chr1:77986534-77986203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 132
               

               
Conread position:
               
414-760
               

               
Cow position:
               
chr1:84104165-84103832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
415-592
               

               
Cow position:
               
chr1:8984796-8984618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
415-594
               

               
Cow position:
               
chr1:45285547-45285729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
415-730
               

               
Cow position:
               
chr1:98511817-98512133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 79
               

               
Conread position:
               
415-742
               

               
Cow position:
               
chr1:6826400-6826084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
41, 52
               

               
Conread position:
               
415-746
               

               
Cow position:
               
chr1:56225682-56225993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
67, 35
               

               
Conread position:
               
415-747
               

               
Cow position:
               
chr1:45553355-45552998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 200
               

               
Conread position:
               
415-754
               

               
Cow position:
               
chr1:69551595-69551257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
415-756
               

               
Cow position:
               
chr1:22944137-22943803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
415-761
               

               
Cow position:
               
chr1:42482092-42482425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
41, 82
               

               
Conread position:
               
415-765
               

               
Cow position:
               
chr1:41138243-41137917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
41, 96
               

               
Conread position:
               
415-765
               

               
Cow position:
               
chr1:78794336-78794006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
41, 79
               

               
Conread position:
               
416-747
               

               
Cow position:
               
chr1:43311886-43311559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
418-751
               

               
Cow position:
               
chr1:627853-628184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
36, 76
               

               
Conread position:
               
419-739
               

               
Cow position:
               
chr1:82513463-82513147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
37, 74
               

               
Conread position:
               
419-746
               

               
Cow position:
               
chr1:4391390-4391056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
37, 173
               

               
Conread position:
               
424-597
               

               
Cow position:
               
chr1:48769700-48769871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
424-739
               

               
Cow position:
               
chr1:71350825-71350519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
32, 44
               

               
Conread position:
               
425-739
               

               
Cow position:
               
chr1:98583662-98583953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
134, 18
               

               
Conread position:
               
425-760
               

               
Cow position:
               
chr1:22823804-22824135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
427-764
               

               
Cow position:
               
chr1:75250013-75250342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
433-761
               

               
Cow position:
               
chr1:90904847-90904530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
434-598
               

               
Cow position:
               
chr1:55089145-55088985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 60
               

               
Conread position:
               
435-600
               

               
Cow position:
               
chr1:72684605-72684765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
436-742
               

               
Cow position:
               
chr1:50991844-50992167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 47
               

               
Conread position:
               
437-733
               

               
Cow position:
               
chr1:96558924-96558647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
438-736
               

               
Cow position:
               
chr1:100474143-100474441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
18, 202
               

               
Conread position:
               
439-763
               

               
Cow position:
               
chr1:59020568-59020898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
9, 147
               

               
Conread position:
               
442-754
               

               
Cow position:
               
chr1:8347039-8347372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
442-765
               

               
Cow position:
               
chr1:95153135-95153477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
14, 104
               

               
Conread position:
               
445-739
               

               
Cow position:
               
chr1:61846064-61846363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 47
               

               
Conread position:
               
445-743
               

               
Cow position:
               
chr1:49825151-49824856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
11, 163
               

               
Conread position:
               
445-758
               

               
Cow position:
               
chr1:29474429-29474128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
446-598
               

               
Cow position:
               
chr1:60948713-60948863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 41
               

               
Conread position:
               
447-747
               

               
Cow position:
               
chr1:77892063-77892379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
449-752
               

               
Cow position:
               
chr1:89388260-89388561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 49
               

               
Conread position:
               
449-757
               

               
Cow position:
               
chr1:98467730-98468024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 30
               

               
Conread position:
               
450-780
               

               
Cow position:
               
chr1:98575969-98576320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 44
               

               
Conread position:
               
453-599
               

               
Cow position:
               
chr1:58036946-58037089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
455-661
               

               
Cow position:
               
chr1:186347-186128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
455-680
               

               
Cow position:
               
chr1:5674395-5674616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
120, 42
               

               
Conread position:
               
455-727
               

               
Cow position:
               
chr1:2971840-2972113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 149
               

               
Conread position:
               
455-765
               

               
Cow position:
               
chr1:102753782-102754087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
95, 50
               

               
Conread position:
               
456-739
               

               
Cow position:
               
chr1:74832357-74832633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
457-745
               

               
Cow position:
               
chr1:78068133-78067839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
142, 36
               

               
Conread position:
               
457-747
               

               
Cow position:
               
chr1:6394490-6394770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
204, 36
               

               
Conread position:
               
457-752
               

               
Cow position:
               
chr1:30983559-30983274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
125, 36
               

               
Conread position:
               
457-767
               

               
Cow position:
               
chr1:92684760-92684451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
88, 36
               

               
Conread position:
               
458-747
               

               
Cow position:
               
chr1:46143530-46143252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 35
               

               
Conread position:
               
459-759
               

               
Cow position:
               
chr1:6589974-6590265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
460-730
               

               
Cow position:
               
chr1:95072264-95072539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
46, 32
               

               
Conread position:
               
462-762
               

               
Cow position:
               
chr1:8624513-8624202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
466-745
               

               
Cow position:
               
chr1:30035153-30035435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
466-745
               

               
Cow position:
               
chr1:81481444-81481173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
469-739
               

               
Cow position:
               
chr1:79718744-79719013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
469-741
               

               
Cow position:
               
chr1:76658136-76657843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
469-753
               

               
Cow position:
               
chr1:88359824-88360103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
137, 24
               

               
Conread position:
               
469-764
               

               
Cow position:
               
chr1:31357568-31357287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
471-734
               

               
Cow position:
               
chr1:77739661-77739924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 136
               

               
Conread position:
               
471-762
               

               
Cow position:
               
chr1:50432542-50432252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
471-764
               

               
Cow position:
               
chr1:81390862-81391152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
35, 152
               

               
Conread position:
               
471-765
               

               
Cow position:
               
chr1:30862466-30862183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 26
               

               
Conread position:
               
472-747
               

               
Cow position:
               
chr1:97717630-97717363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 21
               

               
Conread position:
               
481-742
               

               
Cow position:
               
chr1:102529901-102529645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
128, 12
               

               
Conread position:
               
481-765
               

               
Cow position:
               
chr1:60044941-60045220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
29, 12
               

               
Conread position:
               
482-745
               

               
Cow position:
               
chr1:71790193-71789937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
162, 21
               

               
Conread position:
               
486-765
               

               
Cow position:
               
chr1:95835838-95835564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
158, 23
               

               
Conread position:
               
489-745
               

               
Cow position:
               
chr1:102648236-102648490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 165
               

               
Conread position:
               
490-763
               

               
Cow position:
               
chr1:72422446-72422177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
16, 11
               

               
Conread position:
               
491-771
               

               
Cow position:
               
chr1:73020700-73020425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
13, 134
               

               
Conread position:
               
502-740
               

               
Cow position:
               
chr1:63992362-63992128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
502-740
               

               
Cow position:
               
chr1:90267693-90267930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
502-743
               

               
Cow position:
               
chr1:49980685-49980917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
502-744
               

               
Cow position:
               
chr1:73721335-73721574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
102, 11
               

               
Conread position:
               
504-745
               

               
Cow position:
               
chr1:100823013-100823251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
504-765
               

               
Cow position:
               
chr1:38706878-38706622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
505-740
               

               
Cow position:
               
chr1:21560989-21561226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
97, 134
               

               
Conread position:
               
505-744
               

               
Cow position:
               
chr1:41027051-41027282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
5, 59
               

               
Conread position:
               
505-747
               

               
Cow position:
               
chr1:6731157-6731392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
5, 23
               

               
Conread position:
               
506-736
               

               
Cow position:
               
chr1:84010750-84010990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
115, 210
               

               
Conread position:
               
506-745
               

               
Cow position:
               
chr1:54267959-54267727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
220, 57
               

               
Conread position:
               
506-774
               

               
Cow position:
               
chr1:98897716-98897450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
94, 120
               

               
Conread position:
               
509-768
               

               
Cow position:
               
chr1:9637010-9637264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
91, 117
               

               
Conread position:
               
510-763
               

               
Cow position:
               
chr1:852152-852402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
90, 114
               

               
Conread position:
               
511-735
               

               
Cow position:
               
chr1:5751296-5751516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
511-745
               

               
Cow position:
               
chr1:73719444-73719682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
522-744
               

               
Cow position:
               
chr1:5872785-5872565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
84, 117
               

               
Conread position:
               
530-748
               

               
Cow position:
               
chr1:82336680-82336885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
530-763
               

               
Cow position:
               
chr1:95152873-95153102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
114, 72
               

               
Conread position:
               
531-745
               

               
Cow position:
               
chr1:84594891-84595102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
113, 71
               

               
Conread position:
               
537-760
               

               
Cow position:
               
chr1:69411689-69411469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
537-760
               

               
Cow position:
               
chr1:73534632-73534416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
537-765
               

               
Cow position:
               
chr1:99637245-99637020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
537-767
               

               
Cow position:
               
chr1:24656254-24656489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
63, 131
               

               
Conread position:
               
537-800
               

               
Cow position:
               
chr1:89298101-89297850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 101
               

               
Conread position:
               
537-800
               

               
Cow position:
               
chr1:89301710-89301459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 101
               

               
Conread position:
               
539-739
               

               
Cow position:
               
chr1:63994544-63994350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
105, 63
               

               
Conread position:
               
539-763
               

               
Cow position:
               
chr1:20537216-20537431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
540-749
               

               
Cow position:
               
chr1:54569710-54569916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
543-767
               

               
Cow position:
               
chr1:1380012-1380234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
57, 79
               

               
Conread position:
               
544-742
               

               
Cow position:
               
chr1:39684128-39683935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
56, 93
               

               
Conread position:
               
544-745
               

               
Cow position:
               
chr1:63460894-63461089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
544-747
               

               
Cow position:
               
chr1:25022059-25021865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
112, 59
               

               
Conread position:
               
544-757
               

               
Cow position:
               
chr1:15875676-15875882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
102, 59
               

               
Conread position:
               
545-768
               

               
Cow position:
               
chr1:70483317-70483104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
549-747
               

               
Cow position:
               
chr1:47967002-47966807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
86, 53
               

               
Conread position:
               
549-765
               

               
Cow position:
               
chr1:75080533-75080306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
554-747
               

               
Cow position:
               
chr1:22231674-22231864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 74
               

               
Conread position:
               
555-764
               

               
Cow position:
               
chr1:87934244-87934052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
557-765
               

               
Cow position:
               
chr1:79178657-79178862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
87, 45
               

               
Conread position:
               
564-768
               

               
Cow position:
               
chr1:92999067-92999284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
593-762
               

               
Cow position:
               
chr1:65530969-65530797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
593-762
               

               
Cow position:
               
chr1:65546817-65546649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
597-742
               

               
Cow position:
               
chr1:61030845-61030994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
597-744
               

               
Cow position:
               
chr1:51654737-51654883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
597-746
               

               
Cow position:
               
chr1:76080894-76081048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 146
               

               
Conread position:
               
597-746
               

               
Cow position:
               
chr1:85712529-85712673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
597-752
               

               
Cow position:
               
chr1:49299751-49299904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
597-755
               

               
Cow position:
               
chr1:6398430-6398282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
597-758
               

               
Cow position:
               
chr1:19304659-19304824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
597-760
               

               
Cow position:
               
chr1:32857127-32857287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
61, 41
               

               
Conread position:
               
597-781
               

               
Cow position:
               
chr1:47883528-47883348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
145, 38
               

               
Conread position:
               
599-764
               

               
Cow position:
               
chr1:40207019-40206855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
59, 32
               

               
Conread position:
               
600-767
               

               
Cow position:
               
chr1:92384378-92384554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
602-757
               

               
Cow position:
               
chr1:50287739-50287579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
630-766
               

               
Cow position:
               
chr1:65883309-65883443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 108
               

               
Conread position:
               
640-765
               

               
Cow position:
               
chr1:68400163-68400040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 112
               

               
Conread position:
               
640-771
               

               
Cow position:
               
chr1:97779347-97779477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
651-774
               

               
Cow position:
               
chr1:34767410-34767534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
652-760
               

               
Cow position:
               
chr1:22261595-22261702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
654-744
               

               
Cow position:
               
chr1:41022538-41022626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
654-765
               

               
Cow position:
               
chr1:83222110-83222220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
89, 5
               

               
Conread position:
               
655-762
               

               
Cow position:
               
chr1:46245617-46245508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
657-765
               

               
Cow position:
               
chr1:52085769-52085660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
661-779
               

               
Cow position:
               
chr1:43439196-43439078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.