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Cow genome map

           
Conread name:
           
Utr1-UTR01D050106
        

               
Conread position:
               
1-476
               

               
Cow position:
               
chr21:363196-363658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 189
               

               
Conread position:
               
1-485
               

               
Cow position:
               
chr21:33420174-33419706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 127
               

               
Conread position:
               
1-492
               

               
Cow position:
               
chr21:17434775-17434294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 57
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr21:34658581-34659063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 105
               

               
Conread position:
               
1-505
               

               
Cow position:
               
chr21:48484894-48484411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
411, 15
               

               
Conread position:
               
1-534
               

               
Cow position:
               
chr21:912418-911902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 183
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr21:17713857-17714389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 68
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr21:28512084-28512601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 187
               

               
Conread position:
               
1-547
               

               
Cow position:
               
chr21:13750932-13751470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
225, 57
               

               
Conread position:
               
1-550
               

               
Cow position:
               
chr21:26829694-26829183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 185
               

               
Conread position:
               
1-550
               

               
Cow position:
               
chr21:28617144-28617671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 181
               

               
Conread position:
               
1-551
               

               
Cow position:
               
chr21:1463777-1464311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
423, 5
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr21:17417211-17416670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 84
               

               
Conread position:
               
1-562
               

               
Cow position:
               
chr21:20925962-20925411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 183
               

               
Conread position:
               
1-564
               

               
Cow position:
               
chr21:28989156-28989704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
1-567
               

               
Cow position:
               
chr21:3813924-3813386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 127
               

               
Conread position:
               
1-567
               

               
Cow position:
               
chr21:4189384-4189938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 19
               

               
Conread position:
               
1-581
               

               
Cow position:
               
chr21:43857-44417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 183
               

               
Conread position:
               
1-584
               

               
Cow position:
               
chr21:24606939-24607500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
374, 133
               

               
Conread position:
               
1-590
               

               
Cow position:
               
chr21:15584857-15584299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 74
               

               
Conread position:
               
1-597
               

               
Cow position:
               
chr21:13070321-13069734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 79
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr21:4998942-4998367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
400, 183
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr21:33728979-33729558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
423, 13
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr21:42540678-42540094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 157
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr21:46912086-46912673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 160
               

               
Conread position:
               
1-599
               

               
Cow position:
               
chr21:23801569-23800999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 94
               

               
Conread position:
               
1-600
               

               
Cow position:
               
chr21:28810711-28810131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 82
               

               
Conread position:
               
1-600
               

               
Cow position:
               
chr21:47823729-47823138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 185
               

               
Conread position:
               
1-632
               

               
Cow position:
               
chr21:33997679-33997064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 39
               

               
Conread position:
               
1-675
               

               
Cow position:
               
chr21:39401137-39401806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 126
               

               
Conread position:
               
1-727
               

               
Cow position:
               
chr21:14760128-14760808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 5
               

               
Conread position:
               
1-739
               

               
Cow position:
               
chr21:23606214-23606930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
745
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 93
               

               
Conread position:
               
1-741
               

               
Cow position:
               
chr21:37706871-37706147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 62
               

               
Conread position:
               
1-747
               

               
Cow position:
               
chr21:13089929-13089200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 117
               

               
Conread position:
               
1-747
               

               
Cow position:
               
chr21:18289207-18289948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
374, 138
               

               
Conread position:
               
1-749
               

               
Cow position:
               
chr21:27230247-27229528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
393, 17
               

               
Conread position:
               
1-757
               

               
Cow position:
               
chr21:36756151-36756889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 155
               

               
Conread position:
               
1-760
               

               
Cow position:
               
chr21:27863977-27863237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
573
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 184
               

               
Conread position:
               
1-763
               

               
Cow position:
               
chr21:4282320-4281596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
552
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 11
               

               
Conread position:
               
1-763
               

               
Cow position:
               
chr21:22855765-22856511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
562
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
374, 183
               

               
Conread position:
               
1-763
               

               
Cow position:
               
chr21:25344423-25345151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
769
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
2-562
               

               
Cow position:
               
chr21:6765156-6764608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 67
               

               
Conread position:
               
2-736
               

               
Cow position:
               
chr21:48638199-48637496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
745
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 97
               

               
Conread position:
               
5-492
               

               
Cow position:
               
chr21:21967031-21967495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 129
               

               
Conread position:
               
5-550
               

               
Cow position:
               
chr21:27743288-27743829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 176
               

               
Conread position:
               
5-599
               

               
Cow position:
               
chr21:34391419-34390846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
451, 179
               

               
Conread position:
               
5-714
               

               
Cow position:
               
chr21:6623696-6624397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 118
               

               
Conread position:
               
5-743
               

               
Cow position:
               
chr21:44826320-44825608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 171
               

               
Conread position:
               
5-745
               

               
Cow position:
               
chr21:19957779-19958485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
367, 34
               

               
Conread position:
               
5-752
               

               
Cow position:
               
chr21:12153682-12154401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 89
               

               
Conread position:
               
5-765
               

               
Cow position:
               
chr21:32297959-32297221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 191
               

               
Conread position:
               
5-765
               

               
Cow position:
               
chr21:37299014-37299747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
528
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 53
               

               
Conread position:
               
6-506
               

               
Cow position:
               
chr21:13704137-13703648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 88
               

               
Conread position:
               
6-615
               

               
Cow position:
               
chr21:3236078-3236675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 18
               

               
Conread position:
               
6-747
               

               
Cow position:
               
chr21:33983261-33982544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
369, 78
               

               
Conread position:
               
7-567
               

               
Cow position:
               
chr21:5344233-5344763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
368, 51
               

               
Conread position:
               
7-729
               

               
Cow position:
               
chr21:29069769-29069070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
449, 74
               

               
Conread position:
               
7-762
               

               
Cow position:
               
chr21:10514362-10515121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
783
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
449, 47
               

               
Conread position:
               
9-598
               

               
Cow position:
               
chr21:8126234-8125677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
356, 75
               

               
Conread position:
               
9-719
               

               
Cow position:
               
chr21:41579275-41579998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
743
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 265
               

               
Conread position:
               
9-739
               

               
Cow position:
               
chr21:24297209-24296502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
412, 109
               

               
Conread position:
               
10-577
               

               
Cow position:
               
chr21:17174695-17175250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
19-600
               

               
Cow position:
               
chr21:4277041-4276472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 67
               

               
Conread position:
               
20-567
               

               
Cow position:
               
chr21:32535547-32536074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 106
               

               
Conread position:
               
22-542
               

               
Cow position:
               
chr21:17412728-17412223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
435, 162
               

               
Conread position:
               
22-545
               

               
Cow position:
               
chr21:42914178-42913668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 31
               

               
Conread position:
               
22-599
               

               
Cow position:
               
chr21:9940612-9940059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 118
               

               
Conread position:
               
23-739
               

               
Cow position:
               
chr21:10263606-10264298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 41
               

               
Conread position:
               
23-744
               

               
Cow position:
               
chr21:30849372-30848680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 88
               

               
Conread position:
               
24-597
               

               
Cow position:
               
chr21:5566544-5567113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 177
               

               
Conread position:
               
32-564
               

               
Cow position:
               
chr21:45866512-45867028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 135
               

               
Conread position:
               
39-560
               

               
Cow position:
               
chr21:5455409-5454901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 149
               

               
Conread position:
               
39-740
               

               
Cow position:
               
chr21:24222958-24222253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 55
               

               
Conread position:
               
42-571
               

               
Cow position:
               
chr21:33933800-33933280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 142
               

               
Conread position:
               
45-598
               

               
Cow position:
               
chr21:7564735-7564179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 136
               

               
Conread position:
               
46-490
               

               
Cow position:
               
chr21:42464259-42463812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 144
               

               
Conread position:
               
49-515
               

               
Cow position:
               
chr21:46973544-46973087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 114
               

               
Conread position:
               
53-747
               

               
Cow position:
               
chr21:45971550-45970908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
403, 12
               

               
Conread position:
               
54-598
               

               
Cow position:
               
chr21:25382594-25383154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 130
               

               
Conread position:
               
54-599
               

               
Cow position:
               
chr21:16695967-16696502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 23
               

               
Conread position:
               
54-759
               

               
Cow position:
               
chr21:23672348-23673028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 50
               

               
Conread position:
               
58-599
               

               
Cow position:
               
chr21:44514867-44515393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 27
               

               
Conread position:
               
62-598
               

               
Cow position:
               
chr21:7582299-7581777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 17
               

               
Conread position:
               
64-598
               

               
Cow position:
               
chr21:5153223-5153749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 116
               

               
Conread position:
               
65-747
               

               
Cow position:
               
chr21:42500641-42501322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 119
               

               
Conread position:
               
70-476
               

               
Cow position:
               
chr21:22345398-22345801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
24, 115
               

               
Conread position:
               
71-597
               

               
Cow position:
               
chr21:32191793-32192301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 55
               

               
Conread position:
               
71-597
               

               
Cow position:
               
chr21:35898008-35897499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 108
               

               
Conread position:
               
71-600
               

               
Cow position:
               
chr21:15976255-15976763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 13
               

               
Conread position:
               
72-477
               

               
Cow position:
               
chr21:38867952-38867563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 39
               

               
Conread position:
               
72-534
               

               
Cow position:
               
chr21:28881763-28882201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
384, 107
               

               
Conread position:
               
73-515
               

               
Cow position:
               
chr21:18494595-18495016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 66
               

               
Conread position:
               
73-767
               

               
Cow position:
               
chr21:937667-938315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
527, 107
               

               
Conread position:
               
75-568
               

               
Cow position:
               
chr21:44108638-44109101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 94
               

               
Conread position:
               
78-452
               

               
Cow position:
               
chr21:31158873-31159246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 108
               

               
Conread position:
               
87-598
               

               
Cow position:
               
chr21:10151437-10151933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 83
               

               
Conread position:
               
90-597
               

               
Cow position:
               
chr21:45474123-45473631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 91
               

               
Conread position:
               
90-747
               

               
Cow position:
               
chr21:9415875-9416512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 94
               

               
Conread position:
               
90-770
               

               
Cow position:
               
chr21:4399432-4400091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 94
               

               
Conread position:
               
100-503
               

               
Cow position:
               
chr21:42190516-42190141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
354, 81
               

               
Conread position:
               
111-744
               

               
Cow position:
               
chr21:23586516-23587139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 73
               

               
Conread position:
               
112-735
               

               
Cow position:
               
chr21:30232045-30231437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 36
               

               
Conread position:
               
114-754
               

               
Cow position:
               
chr21:641243-641862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 70
               

               
Conread position:
               
115-598
               

               
Cow position:
               
chr21:16188152-16187679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 122
               

               
Conread position:
               
115-598
               

               
Cow position:
               
chr21:17475477-17475947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
121-764
               

               
Cow position:
               
chr21:13048533-13047901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 63
               

               
Conread position:
               
122-747
               

               
Cow position:
               
chr21:34010721-34010125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 5
               

               
Conread position:
               
125-757
               

               
Cow position:
               
chr21:24857978-24858597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 59
               

               
Conread position:
               
126-552
               

               
Cow position:
               
chr21:8985217-8985634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
376, 55
               

               
Conread position:
               
128-449
               

               
Cow position:
               
chr21:43631522-43631219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
245, 53
               

               
Conread position:
               
128-599
               

               
Cow position:
               
chr21:20045098-20044635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 65
               

               
Conread position:
               
129-752
               

               
Cow position:
               
chr21:20160355-20160954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 56
               

               
Conread position:
               
130-740
               

               
Cow position:
               
chr21:42384180-42384800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 51
               

               
Conread position:
               
130-764
               

               
Cow position:
               
chr21:41974706-41974080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 11
               

               
Conread position:
               
132-747
               

               
Cow position:
               
chr21:39664697-39664126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 60
               

               
Conread position:
               
134-734
               

               
Cow position:
               
chr21:11645309-11644707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 50
               

               
Conread position:
               
135-452
               

               
Cow position:
               
chr21:17282379-17282688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 47
               

               
Conread position:
               
138-742
               

               
Cow position:
               
chr21:46263857-46264457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
409, 54
               

               
Conread position:
               
140-740
               

               
Cow position:
               
chr21:6833734-6834314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 44
               

               
Conread position:
               
141-550
               

               
Cow position:
               
chr21:2786110-2785696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
141-598
               

               
Cow position:
               
chr21:42414416-42413969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 40
               

               
Conread position:
               
144-562
               

               
Cow position:
               
chr21:47802576-47802167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 40
               

               
Conread position:
               
149-743
               

               
Cow position:
               
chr21:11740439-11739854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 19
               

               
Conread position:
               
158-630
               

               
Cow position:
               
chr21:13489343-13489803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 26
               

               
Conread position:
               
161-596
               

               
Cow position:
               
chr21:25536698-25537124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
165-575
               

               
Cow position:
               
chr21:10726988-10727382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 19
               

               
Conread position:
               
175-747
               

               
Cow position:
               
chr21:26648290-26647727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 31
               

               
Conread position:
               
180-598
               

               
Cow position:
               
chr21:33562734-33563131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
189-598
               

               
Cow position:
               
chr21:43357532-43357128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 16
               

               
Conread position:
               
198-746
               

               
Cow position:
               
chr21:6713804-6713255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
199-749
               

               
Cow position:
               
chr21:44252092-44251568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
401, 100
               

               
Conread position:
               
200-752
               

               
Cow position:
               
chr21:13035312-13034759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 65
               

               
Conread position:
               
201-765
               

               
Cow position:
               
chr21:25127348-25127900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 44
               

               
Conread position:
               
202-490
               

               
Cow position:
               
chr21:32237039-32237317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 57
               

               
Conread position:
               
202-579
               

               
Cow position:
               
chr21:2679298-2679666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 34
               

               
Conread position:
               
202-735
               

               
Cow position:
               
chr21:36795339-36795883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 97
               

               
Conread position:
               
202-746
               

               
Cow position:
               
chr21:28734173-28733643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 71
               

               
Conread position:
               
202-755
               

               
Cow position:
               
chr21:3585617-3585086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
398, 71
               

               
Conread position:
               
202-760
               

               
Cow position:
               
chr21:18568910-18568357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
203-598
               

               
Cow position:
               
chr21:13128356-13127971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 6
               

               
Conread position:
               
203-602
               

               
Cow position:
               
chr21:21223024-21223413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 76
               

               
Conread position:
               
205-758
               

               
Cow position:
               
chr21:49700295-49699756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 61
               

               
Conread position:
               
208-567
               

               
Cow position:
               
chr21:11639765-11640119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 55
               

               
Conread position:
               
208-598
               

               
Cow position:
               
chr21:30607358-30606958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 104
               

               
Conread position:
               
210-524
               

               
Cow position:
               
chr21:40058553-40058861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 55
               

               
Conread position:
               
210-740
               

               
Cow position:
               
chr21:41155609-41156135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 55
               

               
Conread position:
               
210-745
               

               
Cow position:
               
chr21:39888997-39888457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 63
               

               
Conread position:
               
212-598
               

               
Cow position:
               
chr21:23322332-23321950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 52
               

               
Conread position:
               
213-602
               

               
Cow position:
               
chr21:31662207-31662599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
215-750
               

               
Cow position:
               
chr21:40899086-40899615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
219-622
               

               
Cow position:
               
chr21:5636965-5636571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 54
               

               
Conread position:
               
219-730
               

               
Cow position:
               
chr21:26244683-26245184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
222-763
               

               
Cow position:
               
chr21:38917977-38918488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 30
               

               
Conread position:
               
227-742
               

               
Cow position:
               
chr21:27569400-27568893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 76
               

               
Conread position:
               
228-606
               

               
Cow position:
               
chr21:41878241-41878608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 34
               

               
Conread position:
               
228-735
               

               
Cow position:
               
chr21:15445314-15444823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 45
               

               
Conread position:
               
236-749
               

               
Cow position:
               
chr21:10007872-10007364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 127
               

               
Conread position:
               
241-599
               

               
Cow position:
               
chr21:28626019-28626366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
132, 24
               

               
Conread position:
               
243-740
               

               
Cow position:
               
chr21:19083824-19083321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
246-739
               

               
Cow position:
               
chr21:30592515-30592051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 27
               

               
Conread position:
               
247-693
               

               
Cow position:
               
chr21:45330158-45329737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
209, 55
               

               
Conread position:
               
250-479
               

               
Cow position:
               
chr21:13303606-13303830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
173, 15
               

               
Conread position:
               
250-739
               

               
Cow position:
               
chr21:23535500-23535976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
253-739
               

               
Cow position:
               
chr21:9310827-9311318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 137
               

               
Conread position:
               
256-447
               

               
Cow position:
               
chr21:9334471-9334282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
258-598
               

               
Cow position:
               
chr21:3818009-3818337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 39
               

               
Conread position:
               
258-739
               

               
Cow position:
               
chr21:41620912-41621391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 41
               

               
Conread position:
               
259-511
               

               
Cow position:
               
chr21:2927409-2927162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
108, 40
               

               
Conread position:
               
259-512
               

               
Cow position:
               
chr21:37361680-37361436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 116
               

               
Conread position:
               
259-740
               

               
Cow position:
               
chr21:40133949-40134410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 47
               

               
Conread position:
               
259-741
               

               
Cow position:
               
chr21:13585264-13584787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 42
               

               
Conread position:
               
259-757
               

               
Cow position:
               
chr21:33515-34015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 40
               

               
Conread position:
               
260-524
               

               
Cow position:
               
chr21:21143676-21143955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
37, 46
               

               
Conread position:
               
260-601
               

               
Cow position:
               
chr21:8206585-8206903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
196, 39
               

               
Conread position:
               
261-503
               

               
Cow position:
               
chr21:13850274-13850031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
262-573
               

               
Cow position:
               
chr21:3381284-3380975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 43
               

               
Conread position:
               
264-541
               

               
Cow position:
               
chr21:31676297-31676570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 35
               

               
Conread position:
               
265-597
               

               
Cow position:
               
chr21:41597615-41597938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 34
               

               
Conread position:
               
265-702
               

               
Cow position:
               
chr21:19258626-19259042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 34
               

               
Conread position:
               
265-760
               

               
Cow position:
               
chr21:27521525-27521059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 34
               

               
Conread position:
               
266-598
               

               
Cow position:
               
chr21:18842437-18842109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
109, 33
               

               
Conread position:
               
267-725
               

               
Cow position:
               
chr21:3361212-3360767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
270-497
               

               
Cow position:
               
chr21:24765089-24765319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
70, 32
               

               
Conread position:
               
270-598
               

               
Cow position:
               
chr21:18780165-18779848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
74, 40
               

               
Conread position:
               
270-598
               

               
Cow position:
               
chr21:45330803-45330479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 29
               

               
Conread position:
               
270-768
               

               
Cow position:
               
chr21:10005083-10004592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 118
               

               
Conread position:
               
273-483
               

               
Cow position:
               
chr21:40065507-40065299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
150, 78
               

               
Conread position:
               
273-499
               

               
Cow position:
               
chr21:31277629-31277849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
273-744
               

               
Cow position:
               
chr21:32559546-32559103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
422, 26
               

               
Conread position:
               
274-469
               

               
Cow position:
               
chr21:13163702-13163892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
124, 25
               

               
Conread position:
               
274-492
               

               
Cow position:
               
chr21:19977140-19977357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
24, 31
               

               
Conread position:
               
274-547
               

               
Cow position:
               
chr21:3047495-3047754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
180, 28
               

               
Conread position:
               
274-567
               

               
Cow position:
               
chr21:30150460-30150166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
20, 159
               

               
Conread position:
               
274-589
               

               
Cow position:
               
chr21:10118362-10118678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
274-602
               

               
Cow position:
               
chr21:34739658-34739976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
274-735
               

               
Cow position:
               
chr21:42135815-42135360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 25
               

               
Conread position:
               
274-739
               

               
Cow position:
               
chr21:23568017-23568488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 34
               

               
Conread position:
               
274-746
               

               
Cow position:
               
chr21:38449643-38449183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
274-746
               

               
Cow position:
               
chr21:42841782-42841315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 21
               

               
Conread position:
               
274-748
               

               
Cow position:
               
chr21:6051315-6051777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 25
               

               
Conread position:
               
274-758
               

               
Cow position:
               
chr21:3763928-3763470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
274-761
               

               
Cow position:
               
chr21:14464386-14464871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 25
               

               
Conread position:
               
274-770
               

               
Cow position:
               
chr21:29002353-29001850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
275-598
               

               
Cow position:
               
chr21:33791558-33791253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 24
               

               
Conread position:
               
276-598
               

               
Cow position:
               
chr21:47764301-47763989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
92, 26
               

               
Conread position:
               
276-599
               

               
Cow position:
               
chr21:1591362-1591683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
276-732
               

               
Cow position:
               
chr21:17193949-17193492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 23
               

               
Conread position:
               
276-741
               

               
Cow position:
               
chr21:14452041-14452498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
277-567
               

               
Cow position:
               
chr21:6102457-6102164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
59, 130
               

               
Conread position:
               
277-598
               

               
Cow position:
               
chr21:21169687-21169368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 118
               

               
Conread position:
               
277-745
               

               
Cow position:
               
chr21:47465309-47464850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
277-757
               

               
Cow position:
               
chr21:40589671-40589200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 25
               

               
Conread position:
               
278-464
               

               
Cow position:
               
chr21:4268686-4268872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
278-491
               

               
Cow position:
               
chr21:9998908-9998694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
5, 22
               

               
Conread position:
               
281-662
               

               
Cow position:
               
chr21:37345286-37344905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 18
               

               
Conread position:
               
284-560
               

               
Cow position:
               
chr21:39450349-39450071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 22
               

               
Conread position:
               
285-756
               

               
Cow position:
               
chr21:17183741-17184198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 14
               

               
Conread position:
               
286-489
               

               
Cow position:
               
chr21:29979935-29979737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
137, 13
               

               
Conread position:
               
287-567
               

               
Cow position:
               
chr21:8235722-8235458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
169, 15
               

               
Conread position:
               
287-696
               

               
Cow position:
               
chr21:27146172-27145768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 202
               

               
Conread position:
               
288-701
               

               
Cow position:
               
chr21:18790733-18790330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 10
               

               
Conread position:
               
290-730
               

               
Cow position:
               
chr21:41198586-41198143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
291-599
               

               
Cow position:
               
chr21:32454727-32455033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
291-747
               

               
Cow position:
               
chr21:13840147-13840599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 17
               

               
Conread position:
               
292-516
               

               
Cow position:
               
chr21:10608629-10608405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
131, 13
               

               
Conread position:
               
294-598
               

               
Cow position:
               
chr21:712761-713071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
162, 77
               

               
Conread position:
               
295-567
               

               
Cow position:
               
chr21:9872795-9873056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
161, 54
               

               
Conread position:
               
296-759
               

               
Cow position:
               
chr21:22194282-22193812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 69
               

               
Conread position:
               
299-582
               

               
Cow position:
               
chr21:19937101-19936808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
101, 97
               

               
Conread position:
               
299-598
               

               
Cow position:
               
chr21:10000912-10001203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 43
               

               
Conread position:
               
299-752
               

               
Cow position:
               
chr21:32339905-32339469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 63
               

               
Conread position:
               
302-599
               

               
Cow position:
               
chr21:18065089-18064785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 126
               

               
Conread position:
               
303-727
               

               
Cow position:
               
chr21:10114493-10114082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 88
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr21:47009403-47009173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
309-743
               

               
Cow position:
               
chr21:41590715-41590299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
147, 70
               

               
Conread position:
               
310-598
               

               
Cow position:
               
chr21:18800686-18800406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
146, 111
               

               
Conread position:
               
310-753
               

               
Cow position:
               
chr21:28244318-28244744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 55
               

               
Conread position:
               
312-567
               

               
Cow position:
               
chr21:21769969-21770224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
65, 182
               

               
Conread position:
               
312-598
               

               
Cow position:
               
chr21:10633796-10633512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 112
               

               
Conread position:
               
313-672
               

               
Cow position:
               
chr21:24642364-24642729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 50
               

               
Conread position:
               
313-742
               

               
Cow position:
               
chr21:9477004-9477429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
62, 115
               

               
Conread position:
               
315-598
               

               
Cow position:
               
chr21:48176674-48176948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
71, 93
               

               
Conread position:
               
316-599
               

               
Cow position:
               
chr21:46607735-46607461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 36
               

               
Conread position:
               
319-476
               

               
Cow position:
               
chr21:32138789-32138946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
106, 136
               

               
Conread position:
               
319-758
               

               
Cow position:
               
chr21:19407731-19407289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
104, 5
               

               
Conread position:
               
322-747
               

               
Cow position:
               
chr21:957521-957940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 106
               

               
Conread position:
               
324-598
               

               
Cow position:
               
chr21:42007603-42007334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
99, 36
               

               
Conread position:
               
325-739
               

               
Cow position:
               
chr21:20152806-20153220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 5
               

               
Conread position:
               
328-597
               

               
Cow position:
               
chr21:11250726-11250996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
47, 175
               

               
Conread position:
               
328-598
               

               
Cow position:
               
chr21:19673675-19673934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
128, 54
               

               
Conread position:
               
328-740
               

               
Cow position:
               
chr21:9301069-9301489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
47, 100
               

               
Conread position:
               
329-747
               

               
Cow position:
               
chr21:12462109-12461698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
331-552
               

               
Cow position:
               
chr21:34736894-34737112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 56
               

               
Conread position:
               
331-739
               

               
Cow position:
               
chr21:17875332-17874927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 97
               

               
Conread position:
               
331-748
               

               
Cow position:
               
chr21:29978899-29978493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 99
               

               
Conread position:
               
332-596
               

               
Cow position:
               
chr21:17856408-17856670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 92
               

               
Conread position:
               
332-598
               

               
Cow position:
               
chr21:20418825-20418554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
18, 95
               

               
Conread position:
               
332-758
               

               
Cow position:
               
chr21:20260456-20260015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
124, 89
               

               
Conread position:
               
335-765
               

               
Cow position:
               
chr21:27668880-27669298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
88, 5
               

               
Conread position:
               
337-727
               

               
Cow position:
               
chr21:34151450-34151827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
88, 235
               

               
Conread position:
               
340-741
               

               
Cow position:
               
chr21:46911-47312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 46
               

               
Conread position:
               
344-740
               

               
Cow position:
               
chr21:30222218-30222606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
29, 47
               

               
Conread position:
               
345-598
               

               
Cow position:
               
chr21:36789671-36789923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
346-763
               

               
Cow position:
               
chr21:18818398-18817975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
347-598
               

               
Cow position:
               
chr21:25629032-25628782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 56
               

               
Conread position:
               
349-762
               

               
Cow position:
               
chr21:37790122-37789717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
19, 144
               

               
Conread position:
               
354-598
               

               
Cow position:
               
chr21:40168742-40168498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
354-741
               

               
Cow position:
               
chr21:20032949-20032567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
247, 70
               

               
Conread position:
               
354-741
               

               
Cow position:
               
chr21:23980295-23979914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 137
               

               
Conread position:
               
355-598
               

               
Cow position:
               
chr21:21077490-21077728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
357-525
               

               
Cow position:
               
chr21:46469859-46470024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
357-752
               

               
Cow position:
               
chr21:28919636-28919255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
359-598
               

               
Cow position:
               
chr21:17008873-17009109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 81
               

               
Conread position:
               
359-725
               

               
Cow position:
               
chr21:10561692-10561336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
97, 62
               

               
Conread position:
               
360-739
               

               
Cow position:
               
chr21:12916533-12916155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
361-758
               

               
Cow position:
               
chr21:9698193-9697791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
17, 132
               

               
Conread position:
               
364-740
               

               
Cow position:
               
chr21:2260461-2260084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
364-766
               

               
Cow position:
               
chr21:9036192-9036591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
48, 132
               

               
Conread position:
               
366-745
               

               
Cow position:
               
chr21:22121421-22121771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
90, 57
               

               
Conread position:
               
369-598
               

               
Cow position:
               
chr21:11198247-11198020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
87, 55
               

               
Conread position:
               
369-739
               

               
Cow position:
               
chr21:16914677-16915044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
87, 55
               

               
Conread position:
               
369-765
               

               
Cow position:
               
chr21:30236915-30236556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
87, 52
               

               
Conread position:
               
369-768
               

               
Cow position:
               
chr21:24343363-24342973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 115
               

               
Conread position:
               
370-566
               

               
Cow position:
               
chr21:5985415-5985222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
53, 100
               

               
Conread position:
               
370-596
               

               
Cow position:
               
chr21:38664541-38664765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
108, 50
               

               
Conread position:
               
370-744
               

               
Cow position:
               
chr21:10816925-10817302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
86, 54
               

               
Conread position:
               
371-722
               

               
Cow position:
               
chr21:10410123-10410469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
85, 12
               

               
Conread position:
               
372-630
               

               
Cow position:
               
chr21:8527572-8527324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
373-735
               

               
Cow position:
               
chr21:22210338-22209984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
83, 50
               

               
Conread position:
               
374-741
               

               
Cow position:
               
chr21:45906714-45906356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 37
               

               
Conread position:
               
377-745
               

               
Cow position:
               
chr21:6997848-6998210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 117
               

               
Conread position:
               
377-752
               

               
Cow position:
               
chr21:30835272-30835642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
79, 45
               

               
Conread position:
               
381-763
               

               
Cow position:
               
chr21:47363825-47363436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 5
               

               
Conread position:
               
381-764
               

               
Cow position:
               
chr21:3400920-3400530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 74
               

               
Conread position:
               
382-586
               

               
Cow position:
               
chr21:13495455-13495659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
74, 42
               

               
Conread position:
               
386-645
               

               
Cow position:
               
chr21:37014484-37014233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
70, 36
               

               
Conread position:
               
386-746
               

               
Cow position:
               
chr21:16152350-16152710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
31, 115
               

               
Conread position:
               
386-761
               

               
Cow position:
               
chr21:10858735-10859092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
37, 107
               

               
Conread position:
               
386-765
               

               
Cow position:
               
chr21:30256350-30255963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
387-727
               

               
Cow position:
               
chr21:28237794-28237448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
387-760
               

               
Cow position:
               
chr21:40432368-40432746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
8, 36
               

               
Conread position:
               
388-598
               

               
Cow position:
               
chr21:46140962-46141176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 104
               

               
Conread position:
               
388-733
               

               
Cow position:
               
chr21:47714086-47713750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
391-596
               

               
Cow position:
               
chr21:33360110-33359917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
391-598
               

               
Cow position:
               
chr21:46552182-46551975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
65, 32
               

               
Conread position:
               
391-773
               

               
Cow position:
               
chr21:36909858-36910250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
395-734
               

               
Cow position:
               
chr21:1511219-1511544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
395-770
               

               
Cow position:
               
chr21:40266049-40266418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
398-715
               

               
Cow position:
               
chr21:7377998-7377684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
399-739
               

               
Cow position:
               
chr21:17890232-17890566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
24, 92
               

               
Conread position:
               
400-598
               

               
Cow position:
               
chr21:17929909-17929709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 114
               

               
Conread position:
               
400-747
               

               
Cow position:
               
chr21:7394314-7394640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
402-567
               

               
Cow position:
               
chr21:22720162-22720325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
402-740
               

               
Cow position:
               
chr21:41140783-41140451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
402-761
               

               
Cow position:
               
chr21:18060026-18059674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 59
               

               
Conread position:
               
405-747
               

               
Cow position:
               
chr21:11779592-11779267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
55, 18
               

               
Conread position:
               
407-744
               

               
Cow position:
               
chr21:977206-976881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
407-762
               

               
Cow position:
               
chr21:19060149-19059804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
409-744
               

               
Cow position:
               
chr21:5464687-5465015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
47, 85
               

               
Conread position:
               
415-739
               

               
Cow position:
               
chr21:8426387-8426706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
415-752
               

               
Cow position:
               
chr21:868979-868644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 68
               

               
Conread position:
               
416-763
               

               
Cow position:
               
chr21:13656682-13656347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
219, 38
               

               
Conread position:
               
417-736
               

               
Cow position:
               
chr21:36910688-36910997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
419-597
               

               
Cow position:
               
chr21:10090045-10089864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 88
               

               
Conread position:
               
421-664
               

               
Cow position:
               
chr21:19513817-19514064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
422-759
               

               
Cow position:
               
chr21:21907476-21907158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
37, 80
               

               
Conread position:
               
423-740
               

               
Cow position:
               
chr21:29014959-29014653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
33, 71
               

               
Conread position:
               
426-773
               

               
Cow position:
               
chr21:742245-742572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
429-747
               

               
Cow position:
               
chr21:45835442-45835119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
431-727
               

               
Cow position:
               
chr21:10883962-10883667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
433-598
               

               
Cow position:
               
chr21:42209667-42209501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
439-759
               

               
Cow position:
               
chr21:20165611-20165920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
445-768
               

               
Cow position:
               
chr21:38720228-38720540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 49
               

               
Conread position:
               
446-742
               

               
Cow position:
               
chr21:71561-71852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
452-767
               

               
Cow position:
               
chr21:26018359-26018673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 61
               

               
Conread position:
               
454-760
               

               
Cow position:
               
chr21:29658266-29658559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
203, 24
               

               
Conread position:
               
457-780
               

               
Cow position:
               
chr21:32393061-32392752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
286, 35
               

               
Conread position:
               
459-741
               

               
Cow position:
               
chr21:44724374-44724111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
462-758
               

               
Cow position:
               
chr21:46132569-46132875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
142, 31
               

               
Conread position:
               
469-735
               

               
Cow position:
               
chr21:12739080-12739347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
469-741
               

               
Cow position:
               
chr21:13588763-13589027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
469-743
               

               
Cow position:
               
chr21:41918245-41917972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
469-763
               

               
Cow position:
               
chr21:8546017-8545731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
491-735
               

               
Cow position:
               
chr21:20213757-20213512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 112
               

               
Conread position:
               
497-644
               

               
Cow position:
               
chr21:17285127-17285274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 93
               

               
Conread position:
               
505-736
               

               
Cow position:
               
chr21:24797692-24797915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
505-740
               

               
Cow position:
               
chr21:41610201-41610443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 161
               

               
Conread position:
               
505-758
               

               
Cow position:
               
chr21:40475535-40475783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
129, 9
               

               
Conread position:
               
506-746
               

               
Cow position:
               
chr21:27677518-27677753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
520-758
               

               
Cow position:
               
chr21:27712193-27711952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
96, 142
               

               
Conread position:
               
520-765
               

               
Cow position:
               
chr21:37928699-37928942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
80, 118
               

               
Conread position:
               
523-764
               

               
Cow position:
               
chr21:38482434-38482670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
530-747
               

               
Cow position:
               
chr21:30145568-30145362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
90, 73
               

               
Conread position:
               
530-758
               

               
Cow position:
               
chr21:13303852-13304078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
208, 76
               

               
Conread position:
               
531-741
               

               
Cow position:
               
chr21:21940346-21940146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
537-746
               

               
Cow position:
               
chr21:5218769-5218978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
121, 109
               

               
Conread position:
               
542-740
               

               
Cow position:
               
chr21:15305227-15305031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
83, 60
               

               
Conread position:
               
544-762
               

               
Cow position:
               
chr21:8986096-8986311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
549-735
               

               
Cow position:
               
chr21:11353139-11353323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 91
               

               
Conread position:
               
550-741
               

               
Cow position:
               
chr21:27744105-27744294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
97, 53
               

               
Conread position:
               
554-745
               

               
Cow position:
               
chr21:22720658-22720836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
555-747
               

               
Cow position:
               
chr21:6291831-6292020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
89, 47
               

               
Conread position:
               
592-727
               

               
Cow position:
               
chr21:8978589-8978720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 45
               

               
Conread position:
               
630-766
               

               
Cow position:
               
chr21:2926989-2926851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
22, 110
               

               
Conread position:
               
632-765
               

               
Cow position:
               
chr21:26242558-26242691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
118, 26
               

               
Conread position:
               
640-761
               

               
Cow position:
               
chr21:12348933-12349052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
656-761
               

               
Cow position:
               
chr21:29011796-29011690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
656-762
               

               
Cow position:
               
chr21:5345061-5345167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
657-762
               

               
Cow position:
               
chr21:31278369-31278475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
657-768
               

               
Cow position:
               
chr21:37730764-37730653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
664-765
               

               
Cow position:
               
chr21:30359162-30359061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.