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Cow genome map

           
Conread name:
           
Utr1-UTR01D050106
        

               
Conread position:
               
1-472
               

               
Cow position:
               
chr28:22304347-22304793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 14
               

               
Conread position:
               
1-488
               

               
Cow position:
               
chr28:29806704-29806223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
374, 23
               

               
Conread position:
               
1-493
               

               
Cow position:
               
chr28:11826978-11827455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 40
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr28:22171243-22170697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 78
               

               
Conread position:
               
1-548
               

               
Cow position:
               
chr28:10900306-10900836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
1-555
               

               
Cow position:
               
chr28:5553421-5552912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 13
               

               
Conread position:
               
1-579
               

               
Cow position:
               
chr28:12759036-12758450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 122
               

               
Conread position:
               
1-596
               

               
Cow position:
               
chr28:10529979-10529423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 76
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr28:5792195-5792777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 40
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr28:11787222-11786648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 184
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr28:16109438-16110006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
502, 183
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr28:21598766-21598183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 88
               

               
Conread position:
               
1-598
               

               
Cow position:
               
chr28:26922893-26922299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 191
               

               
Conread position:
               
1-599
               

               
Cow position:
               
chr28:25070587-25071189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 76
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr28:20312750-20313417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 58
               

               
Conread position:
               
1-674
               

               
Cow position:
               
chr28:5770855-5771504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 15
               

               
Conread position:
               
1-730
               

               
Cow position:
               
chr28:25399369-25400062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 189
               

               
Conread position:
               
1-736
               

               
Cow position:
               
chr28:3024440-3023715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 177
               

               
Conread position:
               
1-736
               

               
Cow position:
               
chr28:3745689-3746398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
374, 143
               

               
Conread position:
               
1-736
               

               
Cow position:
               
chr28:24671756-24672469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 183
               

               
Conread position:
               
1-739
               

               
Cow position:
               
chr28:23615893-23616609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 83
               

               
Conread position:
               
1-740
               

               
Cow position:
               
chr28:4283006-4282284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
376, 34
               

               
Conread position:
               
1-740
               

               
Cow position:
               
chr28:14657182-14657921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 183
               

               
Conread position:
               
1-744
               

               
Cow position:
               
chr28:22500994-22500297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 179
               

               
Conread position:
               
1-747
               

               
Cow position:
               
chr28:10607125-10606427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
405, 169
               

               
Conread position:
               
1-747
               

               
Cow position:
               
chr28:21844442-21845163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
374, 78
               

               
Conread position:
               
1-747
               

               
Cow position:
               
chr28:30303702-30302996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
374, 191
               

               
Conread position:
               
1-749
               

               
Cow position:
               
chr28:8787046-8787753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 61
               

               
Conread position:
               
1-750
               

               
Cow position:
               
chr28:22322737-22323474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 52
               

               
Conread position:
               
1-761
               

               
Cow position:
               
chr28:28766413-28765677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 120
               

               
Conread position:
               
1-763
               

               
Cow position:
               
chr28:24965871-24966622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
781
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 54
               

               
Conread position:
               
1-767
               

               
Cow position:
               
chr28:25701373-25700638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
546
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 64
               

               
Conread position:
               
1-794
               

               
Cow position:
               
chr28:20124272-20125035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
799
               

               
Alignm identity:
               
559
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 182
               

               
Conread position:
               
1-800
               

               
Cow position:
               
chr28:1837488-1838255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
818
               

               
Alignm identity:
               
550
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 83
               

               
Conread position:
               
2-452
               

               
Cow position:
               
chr28:31142475-31142041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
5-498
               

               
Cow position:
               
chr28:11451986-11451493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 127
               

               
Conread position:
               
5-538
               

               
Cow position:
               
chr28:23839704-23840213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
414, 81
               

               
Conread position:
               
5-567
               

               
Cow position:
               
chr28:17316353-17316903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 136
               

               
Conread position:
               
5-576
               

               
Cow position:
               
chr28:7864819-7865374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 188
               

               
Conread position:
               
5-727
               

               
Cow position:
               
chr28:3914199-3914897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
390, 187
               

               
Conread position:
               
5-742
               

               
Cow position:
               
chr28:23793834-23793113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 58
               

               
Conread position:
               
5-749
               

               
Cow position:
               
chr28:22132411-22133122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 187
               

               
Conread position:
               
5-759
               

               
Cow position:
               
chr28:5817345-5818062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
544
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 99
               

               
Conread position:
               
5-762
               

               
Cow position:
               
chr28:30294115-30293358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
786
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 196
               

               
Conread position:
               
6-581
               

               
Cow position:
               
chr28:22279694-22279148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 89
               

               
Conread position:
               
6-597
               

               
Cow position:
               
chr28:25726869-25727440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 71
               

               
Conread position:
               
6-599
               

               
Cow position:
               
chr28:18933967-18934524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 90
               

               
Conread position:
               
8-598
               

               
Cow position:
               
chr28:14234481-14235023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
449, 67
               

               
Conread position:
               
9-598
               

               
Cow position:
               
chr28:21354717-21355300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 175
               

               
Conread position:
               
9-740
               

               
Cow position:
               
chr28:21104351-21103615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 175
               

               
Conread position:
               
12-747
               

               
Cow position:
               
chr28:4070461-4071169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 180
               

               
Conread position:
               
16-727
               

               
Cow position:
               
chr28:21363260-21363932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
440, 123
               

               
Conread position:
               
16-743
               

               
Cow position:
               
chr28:20408886-20409600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 13
               

               
Conread position:
               
17-591
               

               
Cow position:
               
chr28:7751787-7751239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 148
               

               
Conread position:
               
20-743
               

               
Cow position:
               
chr28:11427031-11426340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
351, 57
               

               
Conread position:
               
24-747
               

               
Cow position:
               
chr28:11585699-11584997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 13
               

               
Conread position:
               
30-598
               

               
Cow position:
               
chr28:18354790-18354264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 104
               

               
Conread position:
               
37-456
               

               
Cow position:
               
chr28:16388172-16388560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
37-599
               

               
Cow position:
               
chr28:21380406-21380951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 41
               

               
Conread position:
               
37-739
               

               
Cow position:
               
chr28:21867972-21868661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
338, 147
               

               
Conread position:
               
37-747
               

               
Cow position:
               
chr28:18790536-18791246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
338, 102
               

               
Conread position:
               
40-608
               

               
Cow position:
               
chr28:25563609-25564166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
335, 27
               

               
Conread position:
               
42-598
               

               
Cow position:
               
chr28:32174176-32174698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 35
               

               
Conread position:
               
46-747
               

               
Cow position:
               
chr28:10589495-10588821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 23
               

               
Conread position:
               
49-716
               

               
Cow position:
               
chr28:4139142-4138486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 29
               

               
Conread position:
               
53-747
               

               
Cow position:
               
chr28:16084864-16085530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 105
               

               
Conread position:
               
54-567
               

               
Cow position:
               
chr28:17287770-17288254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 23
               

               
Conread position:
               
54-749
               

               
Cow position:
               
chr28:25806135-25806812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 63
               

               
Conread position:
               
70-558
               

               
Cow position:
               
chr28:26268890-26269360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
385, 24
               

               
Conread position:
               
71-579
               

               
Cow position:
               
chr28:18717570-18717080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 117
               

               
Conread position:
               
86-744
               

               
Cow position:
               
chr28:5930922-5931553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 20
               

               
Conread position:
               
92-733
               

               
Cow position:
               
chr28:11527685-11527061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 118
               

               
Conread position:
               
96-722
               

               
Cow position:
               
chr28:12430186-12430794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 86
               

               
Conread position:
               
102-757
               

               
Cow position:
               
chr28:10682235-10681596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 65
               

               
Conread position:
               
106-764
               

               
Cow position:
               
chr28:14997654-14998294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 86
               

               
Conread position:
               
111-477
               

               
Cow position:
               
chr28:3479860-3480219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 77
               

               
Conread position:
               
111-550
               

               
Cow position:
               
chr28:4021978-4022409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 46
               

               
Conread position:
               
111-563
               

               
Cow position:
               
chr28:23720938-23721368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
264, 73
               

               
Conread position:
               
111-763
               

               
Cow position:
               
chr28:19222550-19221910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 81
               

               
Conread position:
               
121-598
               

               
Cow position:
               
chr28:12946549-12947018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
122-566
               

               
Cow position:
               
chr28:7503444-7503882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 48
               

               
Conread position:
               
124-570
               

               
Cow position:
               
chr28:5904341-5904773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 63
               

               
Conread position:
               
130-766
               

               
Cow position:
               
chr28:10616336-10615718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
360, 54
               

               
Conread position:
               
131-479
               

               
Cow position:
               
chr28:12049098-12048750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 53
               

               
Conread position:
               
134-598
               

               
Cow position:
               
chr28:13267396-13267858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
134-599
               

               
Cow position:
               
chr28:19080252-19079775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
137-727
               

               
Cow position:
               
chr28:10744826-10745407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 51
               

               
Conread position:
               
141-673
               

               
Cow position:
               
chr28:6971714-6971209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
507, 51
               

               
Conread position:
               
144-492
               

               
Cow position:
               
chr28:17738449-17738108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 9
               

               
Conread position:
               
148-526
               

               
Cow position:
               
chr28:16364339-16363968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 21
               

               
Conread position:
               
148-550
               

               
Cow position:
               
chr28:23480628-23480237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 12
               

               
Conread position:
               
148-598
               

               
Cow position:
               
chr28:5826580-5827019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 31
               

               
Conread position:
               
157-737
               

               
Cow position:
               
chr28:15600905-15601476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 23
               

               
Conread position:
               
159-597
               

               
Cow position:
               
chr28:4215013-4215443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
140, 25
               

               
Conread position:
               
160-764
               

               
Cow position:
               
chr28:8347366-8347964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 21
               

               
Conread position:
               
160-765
               

               
Cow position:
               
chr28:9426698-9426124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 21
               

               
Conread position:
               
179-541
               

               
Cow position:
               
chr28:7590523-7590169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 27
               

               
Conread position:
               
183-733
               

               
Cow position:
               
chr28:7512925-7512382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
192-740
               

               
Cow position:
               
chr28:17638190-17637652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 13
               

               
Conread position:
               
194-764
               

               
Cow position:
               
chr28:16919485-16918948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
195-739
               

               
Cow position:
               
chr28:2961141-2960612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
354, 10
               

               
Conread position:
               
199-569
               

               
Cow position:
               
chr28:16412425-16412789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 56
               

               
Conread position:
               
201-594
               

               
Cow position:
               
chr28:26684795-26685182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 41
               

               
Conread position:
               
202-517
               

               
Cow position:
               
chr28:2124120-2124420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
253, 63
               

               
Conread position:
               
202-566
               

               
Cow position:
               
chr28:19222913-19222568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 40
               

               
Conread position:
               
202-577
               

               
Cow position:
               
chr28:16401578-16401947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
202-758
               

               
Cow position:
               
chr28:12964258-12964805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 63
               

               
Conread position:
               
202-759
               

               
Cow position:
               
chr28:4308217-4307669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 60
               

               
Conread position:
               
202-763
               

               
Cow position:
               
chr28:7698296-7697751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 35
               

               
Conread position:
               
202-774
               

               
Cow position:
               
chr28:34878289-34877734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 58
               

               
Conread position:
               
208-567
               

               
Cow position:
               
chr28:16770279-16770630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
92, 67
               

               
Conread position:
               
208-739
               

               
Cow position:
               
chr28:33884097-33884607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
169, 16
               

               
Conread position:
               
208-765
               

               
Cow position:
               
chr28:2819447-2819999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 25
               

               
Conread position:
               
210-599
               

               
Cow position:
               
chr28:23675837-23676208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 39
               

               
Conread position:
               
210-736
               

               
Cow position:
               
chr28:26151714-26152212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
165, 31
               

               
Conread position:
               
212-738
               

               
Cow position:
               
chr28:34443073-34442553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 53
               

               
Conread position:
               
215-763
               

               
Cow position:
               
chr28:16416351-16416873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
163, 37
               

               
Conread position:
               
222-744
               

               
Cow position:
               
chr28:23008027-23007533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 43
               

               
Conread position:
               
230-598
               

               
Cow position:
               
chr28:31110296-31109935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 33
               

               
Conread position:
               
231-726
               

               
Cow position:
               
chr28:26743332-26743822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 34
               

               
Conread position:
               
237-540
               

               
Cow position:
               
chr28:9390649-9390352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 36
               

               
Conread position:
               
241-508
               

               
Cow position:
               
chr28:26784748-26784483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 20
               

               
Conread position:
               
242-766
               

               
Cow position:
               
chr28:7144511-7145034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
58, 28
               

               
Conread position:
               
244-744
               

               
Cow position:
               
chr28:23410600-23410125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 10
               

               
Conread position:
               
246-736
               

               
Cow position:
               
chr28:616127-616570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
246-763
               

               
Cow position:
               
chr28:11866968-11866440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
246-768
               

               
Cow position:
               
chr28:15263999-15263485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 26
               

               
Conread position:
               
250-450
               

               
Cow position:
               
chr28:16450965-16450780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
259-498
               

               
Cow position:
               
chr28:24996853-24996617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
259-571
               

               
Cow position:
               
chr28:16244021-16243725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 13
               

               
Conread position:
               
259-598
               

               
Cow position:
               
chr28:19026267-19025936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 40
               

               
Conread position:
               
259-598
               

               
Cow position:
               
chr28:26533278-26533612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 43
               

               
Conread position:
               
259-740
               

               
Cow position:
               
chr28:23459874-23460349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 230
               

               
Conread position:
               
259-783
               

               
Cow position:
               
chr28:16204594-16204080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
260-571
               

               
Cow position:
               
chr28:13865582-13865888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
196, 39
               

               
Conread position:
               
262-571
               

               
Cow position:
               
chr28:16253116-16252814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 35
               

               
Conread position:
               
262-740
               

               
Cow position:
               
chr28:34229968-34230436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 40
               

               
Conread position:
               
263-599
               

               
Cow position:
               
chr28:20963790-20963459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
93, 12
               

               
Conread position:
               
263-646
               

               
Cow position:
               
chr28:16386766-16386381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 36
               

               
Conread position:
               
263-759
               

               
Cow position:
               
chr28:8408477-8408984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
265-490
               

               
Cow position:
               
chr28:7328644-7328859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
265-598
               

               
Cow position:
               
chr28:25249097-25249423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
265-704
               

               
Cow position:
               
chr28:3408475-3408053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
112, 35
               

               
Conread position:
               
266-591
               

               
Cow position:
               
chr28:22484991-22485315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 33
               

               
Conread position:
               
266-598
               

               
Cow position:
               
chr28:6059730-6059401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 33
               

               
Conread position:
               
267-743
               

               
Cow position:
               
chr28:3493040-3492579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 35
               

               
Conread position:
               
268-759
               

               
Cow position:
               
chr28:27218065-27218549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
273-475
               

               
Cow position:
               
chr28:16354870-16354656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
87, 29
               

               
Conread position:
               
273-740
               

               
Cow position:
               
chr28:5236850-5236390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 29
               

               
Conread position:
               
274-526
               

               
Cow position:
               
chr28:13607636-13607886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
274-584
               

               
Cow position:
               
chr28:4057737-4058037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 25
               

               
Conread position:
               
274-598
               

               
Cow position:
               
chr28:22321173-22321488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 28
               

               
Conread position:
               
274-598
               

               
Cow position:
               
chr28:26103466-26103771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
182, 25
               

               
Conread position:
               
274-739
               

               
Cow position:
               
chr28:21502146-21502586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
274-746
               

               
Cow position:
               
chr28:16370323-16369879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 28
               

               
Conread position:
               
274-751
               

               
Cow position:
               
chr28:33051771-33052274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 25
               

               
Conread position:
               
274-763
               

               
Cow position:
               
chr28:22345770-22346249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
275-499
               

               
Cow position:
               
chr28:28414422-28414645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
102, 24
               

               
Conread position:
               
275-727
               

               
Cow position:
               
chr28:4914350-4913900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 24
               

               
Conread position:
               
276-762
               

               
Cow position:
               
chr28:30608428-30607970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
229, 26
               

               
Conread position:
               
278-598
               

               
Cow position:
               
chr28:26719115-26719412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
179, 24
               

               
Conread position:
               
284-554
               

               
Cow position:
               
chr28:19394390-19394644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
172, 15
               

               
Conread position:
               
284-739
               

               
Cow position:
               
chr28:9636696-9636253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 15
               

               
Conread position:
               
287-491
               

               
Cow position:
               
chr28:28076644-28076445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
169, 12
               

               
Conread position:
               
287-736
               

               
Cow position:
               
chr28:34430663-34430222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 15
               

               
Conread position:
               
289-741
               

               
Cow position:
               
chr28:26340102-26340540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 10
               

               
Conread position:
               
291-736
               

               
Cow position:
               
chr28:11818194-11817741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 14
               

               
Conread position:
               
294-740
               

               
Cow position:
               
chr28:25973300-25973747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
81, 12
               

               
Conread position:
               
295-598
               

               
Cow position:
               
chr28:4098615-4098899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
295-743
               

               
Cow position:
               
chr28:12951202-12951624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 76
               

               
Conread position:
               
295-760
               

               
Cow position:
               
chr28:9099704-9100154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 108
               

               
Conread position:
               
296-499
               

               
Cow position:
               
chr28:8656965-8656768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
158, 20
               

               
Conread position:
               
296-747
               

               
Cow position:
               
chr28:4884494-4884041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
296-761
               

               
Cow position:
               
chr28:5144753-5144288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 156
               

               
Conread position:
               
299-532
               

               
Cow position:
               
chr28:13447482-13447701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
157, 66
               

               
Conread position:
               
299-564
               

               
Cow position:
               
chr28:12987174-12987441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
299-763
               

               
Cow position:
               
chr28:10053565-10053104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 203
               

               
Conread position:
               
302-454
               

               
Cow position:
               
chr28:2888206-2888358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
110, 60
               

               
Conread position:
               
302-762
               

               
Cow position:
               
chr28:751003-751457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 12
               

               
Conread position:
               
304-598
               

               
Cow position:
               
chr28:18625001-18625303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
305-644
               

               
Cow position:
               
chr28:5188622-5188292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
151, 80
               

               
Conread position:
               
306-546
               

               
Cow position:
               
chr28:10478562-10478326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
150, 80
               

               
Conread position:
               
315-579
               

               
Cow position:
               
chr28:3714591-3714851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
92, 126
               

               
Conread position:
               
315-743
               

               
Cow position:
               
chr28:29416927-29416517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
60, 110
               

               
Conread position:
               
316-746
               

               
Cow position:
               
chr28:5437301-5436875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 109
               

               
Conread position:
               
318-540
               

               
Cow position:
               
chr28:5103971-5103750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
56, 46
               

               
Conread position:
               
320-441
               

               
Cow position:
               
chr28:10699696-10699820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
92, 48
               

               
Conread position:
               
320-547
               

               
Cow position:
               
chr28:22739595-22739810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
134, 30
               

               
Conread position:
               
321-765
               

               
Cow position:
               
chr28:19054812-19055247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 65
               

               
Conread position:
               
322-736
               

               
Cow position:
               
chr28:28631519-28631944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
33, 178
               

               
Conread position:
               
322-747
               

               
Cow position:
               
chr28:4090248-4089848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
135, 59
               

               
Conread position:
               
325-599
               

               
Cow position:
               
chr28:14512325-14512603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
131, 35
               

               
Conread position:
               
328-643
               

               
Cow position:
               
chr28:10844921-10845234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
128, 94
               

               
Conread position:
               
328-744
               

               
Cow position:
               
chr28:4158754-4159173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
34, 100
               

               
Conread position:
               
328-764
               

               
Cow position:
               
chr28:27313946-27313500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 156
               

               
Conread position:
               
329-745
               

               
Cow position:
               
chr28:5224516-5224914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
331-746
               

               
Cow position:
               
chr28:4881440-4881038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 170
               

               
Conread position:
               
332-747
               

               
Cow position:
               
chr28:4643961-4643559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 93
               

               
Conread position:
               
333-762
               

               
Cow position:
               
chr28:4835038-4834617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
334-672
               

               
Cow position:
               
chr28:10999860-10999513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
160, 47
               

               
Conread position:
               
334-741
               

               
Cow position:
               
chr28:26982938-26982530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 168
               

               
Conread position:
               
336-748
               

               
Cow position:
               
chr28:23724645-23724256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 86
               

               
Conread position:
               
338-550
               

               
Cow position:
               
chr28:118243-118029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
37, 66
               

               
Conread position:
               
339-511
               

               
Cow position:
               
chr28:3105052-3105233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
21, 169
               

               
Conread position:
               
340-550
               

               
Cow position:
               
chr28:19023947-19024166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
340-590
               

               
Cow position:
               
chr28:18760228-18759985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
116, 25
               

               
Conread position:
               
342-570
               

               
Cow position:
               
chr28:22338820-22339035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
136, 23
               

               
Conread position:
               
345-565
               

               
Cow position:
               
chr28:28903847-28903627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
112, 10
               

               
Conread position:
               
347-741
               

               
Cow position:
               
chr28:11762523-11762904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
109, 42
               

               
Conread position:
               
349-747
               

               
Cow position:
               
chr28:11829114-11828747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
293, 72
               

               
Conread position:
               
350-758
               

               
Cow position:
               
chr28:1383450-1383048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
106, 72
               

               
Conread position:
               
350-762
               

               
Cow position:
               
chr28:26264628-26265057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
73, 142
               

               
Conread position:
               
351-577
               

               
Cow position:
               
chr28:16403179-16403407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
354-742
               

               
Cow position:
               
chr28:2752667-2752268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
360-570
               

               
Cow position:
               
chr28:9928450-9928250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
361-599
               

               
Cow position:
               
chr28:32365681-32365914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
361-758
               

               
Cow position:
               
chr28:5199664-5200050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
95, 30
               

               
Conread position:
               
367-752
               

               
Cow position:
               
chr28:8358746-8359117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
56, 22
               

               
Conread position:
               
368-464
               

               
Cow position:
               
chr28:19015442-19015346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 54
               

               
Conread position:
               
368-767
               

               
Cow position:
               
chr28:4440146-4440531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
55, 72
               

               
Conread position:
               
369-788
               

               
Cow position:
               
chr28:29989269-29988856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
139, 52
               

               
Conread position:
               
373-742
               

               
Cow position:
               
chr28:13527051-13527405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
227, 51
               

               
Conread position:
               
373-743
               

               
Cow position:
               
chr28:24082118-24082478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
120, 18
               

               
Conread position:
               
374-742
               

               
Cow position:
               
chr28:30746879-30746531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 49
               

               
Conread position:
               
377-595
               

               
Cow position:
               
chr28:25728051-25728260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
79, 10
               

               
Conread position:
               
379-759
               

               
Cow position:
               
chr28:10057738-10057363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
44, 113
               

               
Conread position:
               
381-747
               

               
Cow position:
               
chr28:10495421-10495088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
219, 38
               

               
Conread position:
               
381-749
               

               
Cow position:
               
chr28:7009118-7008768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
74, 7
               

               
Conread position:
               
383-744
               

               
Cow position:
               
chr28:27161472-27161108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 111
               

               
Conread position:
               
386-753
               

               
Cow position:
               
chr28:22571804-22571466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
114, 37
               

               
Conread position:
               
387-739
               

               
Cow position:
               
chr28:19262727-19262380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
390-760
               

               
Cow position:
               
chr28:3449164-3449534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 114
               

               
Conread position:
               
393-702
               

               
Cow position:
               
chr28:1538036-1538335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
393-767
               

               
Cow position:
               
chr28:11079175-11079533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
63, 5
               

               
Conread position:
               
395-535
               

               
Cow position:
               
chr28:5838407-5838545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
27, 97
               

               
Conread position:
               
396-742
               

               
Cow position:
               
chr28:11346614-11346282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
396-759
               

               
Cow position:
               
chr28:5577390-5577758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 102
               

               
Conread position:
               
399-731
               

               
Cow position:
               
chr28:4645089-4644753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
150, 25
               

               
Conread position:
               
407-550
               

               
Cow position:
               
chr28:7644329-7644475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 84
               

               
Conread position:
               
407-744
               

               
Cow position:
               
chr28:19564349-19564026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 50
               

               
Conread position:
               
407-766
               

               
Cow position:
               
chr28:3011393-3011036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 87
               

               
Conread position:
               
410-598
               

               
Cow position:
               
chr28:5166649-5166836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
46, 84
               

               
Conread position:
               
411-598
               

               
Cow position:
               
chr28:17398341-17398165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
47, 27
               

               
Conread position:
               
411-598
               

               
Cow position:
               
chr28:17414582-17414406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
47, 27
               

               
Conread position:
               
411-768
               

               
Cow position:
               
chr28:31223682-31223327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
80, 46
               

               
Conread position:
               
412-745
               

               
Cow position:
               
chr28:23447939-23447624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 82
               

               
Conread position:
               
415-768
               

               
Cow position:
               
chr28:3484465-3484817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
41, 94
               

               
Conread position:
               
416-733
               

               
Cow position:
               
chr28:12672572-12672263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
216, 41
               

               
Conread position:
               
417-722
               

               
Cow position:
               
chr28:18370118-18369826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
39, 74
               

               
Conread position:
               
417-748
               

               
Cow position:
               
chr28:25195603-25195927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
183, 42
               

               
Conread position:
               
418-598
               

               
Cow position:
               
chr28:12363270-12363088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
38, 74
               

               
Conread position:
               
418-743
               

               
Cow position:
               
chr28:32593758-32593426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
38, 48
               

               
Conread position:
               
423-759
               

               
Cow position:
               
chr28:11307612-11307294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
424-747
               

               
Cow position:
               
chr28:6358513-6358198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
176, 34
               

               
Conread position:
               
426-727
               

               
Cow position:
               
chr28:17071232-17071532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
436-672
               

               
Cow position:
               
chr28:8147953-8147718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 62
               

               
Conread position:
               
445-762
               

               
Cow position:
               
chr28:7350575-7350880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
449-685
               

               
Cow position:
               
chr28:3161032-3160793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 57
               

               
Conread position:
               
456-658
               

               
Cow position:
               
chr28:17012362-17012157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
144, 34
               

               
Conread position:
               
456-766
               

               
Cow position:
               
chr28:12662472-12662159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
460-746
               

               
Cow position:
               
chr28:4013020-4013293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
196, 38
               

               
Conread position:
               
461-761
               

               
Cow position:
               
chr28:5630020-5630325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
40, 169
               

               
Conread position:
               
469-725
               

               
Cow position:
               
chr28:20397428-20397176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
132, 24
               

               
Conread position:
               
469-748
               

               
Cow position:
               
chr28:20759759-20759480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
133, 24
               

               
Conread position:
               
469-762
               

               
Cow position:
               
chr28:4873406-4873097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
478-759
               

               
Cow position:
               
chr28:3445531-3445257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
491-743
               

               
Cow position:
               
chr28:17680584-17680832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
143, 111
               

               
Conread position:
               
491-757
               

               
Cow position:
               
chr28:777634-777897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 112
               

               
Conread position:
               
492-743
               

               
Cow position:
               
chr28:5254837-5255079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
164, 111
               

               
Conread position:
               
493-761
               

               
Cow position:
               
chr28:8827128-8827390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 55
               

               
Conread position:
               
493-763
               

               
Cow position:
               
chr28:28560860-28561126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
497-763
               

               
Cow position:
               
chr28:19128200-19127943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
111, 16
               

               
Conread position:
               
498-767
               

               
Cow position:
               
chr28:118578-118847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
102, 142
               

               
Conread position:
               
501-763
               

               
Cow position:
               
chr28:13356395-13356138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
82, 42
               

               
Conread position:
               
503-761
               

               
Cow position:
               
chr28:23262478-23262223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
252, 81
               

               
Conread position:
               
505-736
               

               
Cow position:
               
chr28:4185883-4186104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
154, 29
               

               
Conread position:
               
505-769
               

               
Cow position:
               
chr28:13133608-13133866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
114, 96
               

               
Conread position:
               
506-741
               

               
Cow position:
               
chr28:4937265-4937034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
96, 118
               

               
Conread position:
               
509-762
               

               
Cow position:
               
chr28:11398817-11398568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
93, 123
               

               
Conread position:
               
510-764
               

               
Cow position:
               
chr28:4101501-4101740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 94
               

               
Conread position:
               
511-741
               

               
Cow position:
               
chr28:5231920-5232146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
206, 91
               

               
Conread position:
               
511-763
               

               
Cow position:
               
chr28:7014435-7014683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
240, 86
               

               
Conread position:
               
514-761
               

               
Cow position:
               
chr28:13048298-13048059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
523-761
               

               
Cow position:
               
chr28:5673870-5674097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
133, 7
               

               
Conread position:
               
525-764
               

               
Cow position:
               
chr28:19039023-19038793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
136, 78
               

               
Conread position:
               
530-752
               

               
Cow position:
               
chr28:20173841-20174055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
106, 15
               

               
Conread position:
               
530-758
               

               
Cow position:
               
chr28:6563897-6563671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
530-761
               

               
Cow position:
               
chr28:4163578-4163354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
127, 30
               

               
Conread position:
               
532-772
               

               
Cow position:
               
chr28:15362582-15362817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
118, 70
               

               
Conread position:
               
537-762
               

               
Cow position:
               
chr28:32014794-32015013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 14
               

               
Conread position:
               
537-767
               

               
Cow position:
               
chr28:117755-117525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
63, 103
               

               
Conread position:
               
544-758
               

               
Cow position:
               
chr28:659280-659063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
550-746
               

               
Cow position:
               
chr28:5609896-5609707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
550-747
               

               
Cow position:
               
chr28:10958823-10959010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
551-744
               

               
Cow position:
               
chr28:5245378-5245566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
74, 52
               

               
Conread position:
               
551-795
               

               
Cow position:
               
chr28:2892274-2892518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 73
               

               
Conread position:
               
557-752
               

               
Cow position:
               
chr28:7964650-7964460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
559-759
               

               
Cow position:
               
chr28:3678392-3678585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
176, 44
               

               
Conread position:
               
565-771
               

               
Cow position:
               
chr28:6301117-6301321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
597-765
               

               
Cow position:
               
chr28:2743169-2743346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
597-765
               

               
Cow position:
               
chr28:5773980-5774144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
652-761
               

               
Cow position:
               
chr28:6124141-6124033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
99, 6
               

               
Conread position:
               
652-762
               

               
Cow position:
               
chr28:17620241-17620132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
652-765
               

               
Cow position:
               
chr28:16159752-16159639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
99, 6
               

               
Conread position:
               
655-747
               

               
Cow position:
               
chr28:16200620-16200528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
656-763
               

               
Cow position:
               
chr28:17738029-17737922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
657-760
               

               
Cow position:
               
chr28:20614429-20614326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
657-764
               

               
Cow position:
               
chr28:10528836-10528729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.