Cow genome map
| Conread name: | Utr1-UTR01D050106 | 
| Conread position: | 1-466 | 
| Cow position: | chr6:46666626-46667086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 252, 180 | 
| Conread position: | 1-474 | 
| Cow position: | chr6:1784246-1783795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 364, 183 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:21312236-21311763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 126, 89 | 
| Conread position: | 1-498 | 
| Cow position: | chr6:16737540-16738026 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 455, 183 | 
| Conread position: | 1-550 | 
| Cow position: | chr6:13741217-13741757 (view UCSC Genome Browser custom track) | 
| Alignm length: | 558 | 
| Alignm identity: | 416 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 411, 183 | 
| Conread position: | 1-550 | 
| Cow position: | chr6:47540043-47540587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 557 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 184 | 
| Conread position: | 1-550 | 
| Cow position: | chr6:58075741-58076286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 562 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 69 | 
| Conread position: | 1-555 | 
| Cow position: | chr6:16410723-16411252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 556 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 455, 86 | 
| Conread position: | 1-555 | 
| Cow position: | chr6:50120266-50119721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 564 | 
| Alignm identity: | 417 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 165, 84 | 
| Conread position: | 1-561 | 
| Cow position: | chr6:34075545-34076096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 571 | 
| Alignm identity: | 429 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 184 | 
| Conread position: | 1-563 | 
| Cow position: | chr6:46633779-46634322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 571 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 186 | 
| Conread position: | 1-597 | 
| Cow position: | chr6:55040698-55040111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 605 | 
| Alignm identity: | 423 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 97 | 
| Conread position: | 1-598 | 
| Cow position: | chr6:42565206-42565792 (view UCSC Genome Browser custom track) | 
| Alignm length: | 604 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 141, 87 | 
| Conread position: | 1-654 | 
| Cow position: | chr6:14839506-14838862 (view UCSC Genome Browser custom track) | 
| Alignm length: | 665 | 
| Alignm identity: | 474 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 229, 121 | 
| Conread position: | 1-702 | 
| Cow position: | chr6:6068168-6067502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 717 | 
| Alignm identity: | 502 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 89 | 
| Conread position: | 1-728 | 
| Cow position: | chr6:46292810-46292127 (view UCSC Genome Browser custom track) | 
| Alignm length: | 735 | 
| Alignm identity: | 515 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 134 | 
| Conread position: | 1-745 | 
| Cow position: | chr6:28147775-28148509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 758 | 
| Alignm identity: | 537 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 410, 181 | 
| Conread position: | 1-745 | 
| Cow position: | chr6:39358812-39358098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 753 | 
| Alignm identity: | 524 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 443, 91 | 
| Conread position: | 1-746 | 
| Cow position: | chr6:16765872-16765153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 747 | 
| Alignm identity: | 517 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 455, 43 | 
| Conread position: | 1-752 | 
| Cow position: | chr6:4468283-4469018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 771 | 
| Alignm identity: | 551 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 346, 82 | 
| Conread position: | 1-752 | 
| Cow position: | chr6:67187215-67187930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 757 | 
| Alignm identity: | 527 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 188 | 
| Conread position: | 1-758 | 
| Cow position: | chr6:35725605-35726350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 776 | 
| Alignm identity: | 504 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 110 | 
| Conread position: | 1-759 | 
| Cow position: | chr6:43345920-43345180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 776 | 
| Alignm identity: | 524 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 380, 70 | 
| Conread position: | 1-759 | 
| Cow position: | chr6:48567823-48567101 (view UCSC Genome Browser custom track) | 
| Alignm length: | 765 | 
| Alignm identity: | 530 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 188, 20 | 
| Conread position: | 1-760 | 
| Cow position: | chr6:27852186-27851439 (view UCSC Genome Browser custom track) | 
| Alignm length: | 777 | 
| Alignm identity: | 530 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 137, 5 | 
| Conread position: | 1-761 | 
| Cow position: | chr6:17414928-17414191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 772 | 
| Alignm identity: | 532 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 383, 31 | 
| Conread position: | 1-762 | 
| Cow position: | chr6:40031713-40032440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 767 | 
| Alignm identity: | 554 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 175, 88 | 
| Conread position: | 1-762 | 
| Cow position: | chr6:61632077-61631345 (view UCSC Genome Browser custom track) | 
| Alignm length: | 779 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 326, 53 | 
| Conread position: | 1-763 | 
| Cow position: | chr6:35181725-35180991 (view UCSC Genome Browser custom track) | 
| Alignm length: | 770 | 
| Alignm identity: | 556 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 38 | 
| Conread position: | 1-763 | 
| Cow position: | chr6:53933328-53932581 (view UCSC Genome Browser custom track) | 
| Alignm length: | 779 | 
| Alignm identity: | 550 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 209, 83 | 
| Conread position: | 1-764 | 
| Cow position: | chr6:10332589-10331834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 782 | 
| Alignm identity: | 549 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 189 | 
| Conread position: | 1-765 | 
| Cow position: | chr6:9751532-9750779 (view UCSC Genome Browser custom track) | 
| Alignm length: | 781 | 
| Alignm identity: | 520 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 90 | 
| Conread position: | 1-770 | 
| Cow position: | chr6:67214264-67215039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 798 | 
| Alignm identity: | 571 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 374, 92 | 
| Conread position: | 1-772 | 
| Cow position: | chr6:52478924-52478139 (view UCSC Genome Browser custom track) | 
| Alignm length: | 800 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 192 | 
| Conread position: | 2-566 | 
| Cow position: | chr6:66235009-66235553 (view UCSC Genome Browser custom track) | 
| Alignm length: | 570 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 373, 75 | 
| Conread position: | 2-597 | 
| Cow position: | chr6:1887127-1886564 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 454, 186 | 
| Conread position: | 2-767 | 
| Cow position: | chr6:53178157-53178895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 772 | 
| Alignm identity: | 541 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 188 | 
| Conread position: | 5-550 | 
| Cow position: | chr6:5958488-5957972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 550 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 369, 54 | 
| Conread position: | 5-597 | 
| Cow position: | chr6:11169238-11169804 (view UCSC Genome Browser custom track) | 
| Alignm length: | 600 | 
| Alignm identity: | 440 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 346, 23 | 
| Conread position: | 5-598 | 
| Cow position: | chr6:4865012-4864443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 598 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 267, 91 | 
| Conread position: | 5-598 | 
| Cow position: | chr6:6342957-6343534 (view UCSC Genome Browser custom track) | 
| Alignm length: | 607 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 126, 71 | 
| Conread position: | 5-730 | 
| Cow position: | chr6:46465352-46466048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 727 | 
| Alignm identity: | 488 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 451, 42 | 
| Conread position: | 5-762 | 
| Cow position: | chr6:18447990-18447252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 768 | 
| Alignm identity: | 560 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 173, 199 | 
| Conread position: | 5-767 | 
| Cow position: | chr6:64431470-64432199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 767 | 
| Alignm identity: | 562 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 451, 158 | 
| Conread position: | 6-744 | 
| Cow position: | chr6:36471043-36470334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 749 | 
| Alignm identity: | 531 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 47 | 
| Conread position: | 7-561 | 
| Cow position: | chr6:38233530-38234026 (view UCSC Genome Browser custom track) | 
| Alignm length: | 557 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 46 | 
| Conread position: | 7-764 | 
| Cow position: | chr6:8562246-8562978 (view UCSC Genome Browser custom track) | 
| Alignm length: | 766 | 
| Alignm identity: | 547 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 77 | 
| Conread position: | 8-758 | 
| Cow position: | chr6:3979136-3978383 (view UCSC Genome Browser custom track) | 
| Alignm length: | 775 | 
| Alignm identity: | 534 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 181 | 
| Conread position: | 9-599 | 
| Cow position: | chr6:28476694-28477273 (view UCSC Genome Browser custom track) | 
| Alignm length: | 605 | 
| Alignm identity: | 408 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 196 | 
| Conread position: | 11-758 | 
| Cow position: | chr6:32121424-32122152 (view UCSC Genome Browser custom track) | 
| Alignm length: | 761 | 
| Alignm identity: | 520 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 265 | 
| Conread position: | 12-584 | 
| Cow position: | chr6:44098618-44099176 (view UCSC Genome Browser custom track) | 
| Alignm length: | 576 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 387, 171 | 
| Conread position: | 12-739 | 
| Cow position: | chr6:32867675-32866982 (view UCSC Genome Browser custom track) | 
| Alignm length: | 730 | 
| Alignm identity: | 493 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 555, 57 | 
| Conread position: | 12-741 | 
| Cow position: | chr6:47339833-47339084 (view UCSC Genome Browser custom track) | 
| Alignm length: | 767 | 
| Alignm identity: | 540 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 120, 179 | 
| Conread position: | 13-750 | 
| Cow position: | chr6:13688280-13687566 (view UCSC Genome Browser custom track) | 
| Alignm length: | 748 | 
| Alignm identity: | 488 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 71 | 
| Conread position: | 16-644 | 
| Cow position: | chr6:18987756-18988367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 642 | 
| Alignm identity: | 481 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 442, 67 | 
| Conread position: | 16-725 | 
| Cow position: | chr6:51834938-51835623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 713 | 
| Alignm identity: | 524 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 365, 27 | 
| Conread position: | 17-561 | 
| Cow position: | chr6:36928186-36928728 (view UCSC Genome Browser custom track) | 
| Alignm length: | 557 | 
| Alignm identity: | 403 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 169 | 
| Conread position: | 17-598 | 
| Cow position: | chr6:28811464-28810894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 408 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 23 | 
| Conread position: | 17-763 | 
| Cow position: | chr6:16699807-16700521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 756 | 
| Alignm identity: | 541 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 405, 31 | 
| Conread position: | 22-745 | 
| Cow position: | chr6:13366839-13367527 (view UCSC Genome Browser custom track) | 
| Alignm length: | 729 | 
| Alignm identity: | 507 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 99 | 
| Conread position: | 23-577 | 
| Cow position: | chr6:9375820-9375298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 562 | 
| Alignm identity: | 404 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 352, 73 | 
| Conread position: | 25-599 | 
| Cow position: | chr6:36651967-36652527 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 414 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 87 | 
| Conread position: | 28-596 | 
| Cow position: | chr6:18049481-18048922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 577 | 
| Alignm identity: | 428 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 158 | 
| Conread position: | 29-596 | 
| Cow position: | chr6:48169492-48170040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 572 | 
| Alignm identity: | 414 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 342, 159 | 
| Conread position: | 32-766 | 
| Cow position: | chr6:5096000-5095276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 750 | 
| Alignm identity: | 559 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 243, 121 | 
| Conread position: | 43-742 | 
| Cow position: | chr6:38770864-38771514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 709 | 
| Alignm identity: | 496 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 130 | 
| Conread position: | 47-598 | 
| Cow position: | chr6:28977484-28976936 (view UCSC Genome Browser custom track) | 
| Alignm length: | 571 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 139 | 
| Conread position: | 57-550 | 
| Cow position: | chr6:46205595-46206069 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 278, 12 | 
| Conread position: | 59-735 | 
| Cow position: | chr6:24781992-24781316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 697 | 
| Alignm identity: | 495 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 138 | 
| Conread position: | 59-742 | 
| Cow position: | chr6:65870604-65871273 (view UCSC Genome Browser custom track) | 
| Alignm length: | 695 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 315, 18 | 
| Conread position: | 64-674 | 
| Cow position: | chr6:31636112-31635511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 629 | 
| Alignm identity: | 433 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 123 | 
| Conread position: | 71-456 | 
| Cow position: | chr6:10649435-10649061 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 123 | 
| Conread position: | 71-592 | 
| Cow position: | chr6:62925411-62924898 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 125 | 
| Conread position: | 71-742 | 
| Cow position: | chr6:32125656-32126294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 676 | 
| Alignm identity: | 478 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 303, 113 | 
| Conread position: | 73-753 | 
| Cow position: | chr6:17090177-17090831 (view UCSC Genome Browser custom track) | 
| Alignm length: | 699 | 
| Alignm identity: | 481 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 118 | 
| Conread position: | 75-598 | 
| Cow position: | chr6:35103728-35103224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 381, 10 | 
| Conread position: | 81-744 | 
| Cow position: | chr6:56849595-56850260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 692 | 
| Alignm identity: | 477 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 100 | 
| Conread position: | 84-744 | 
| Cow position: | chr6:21004256-21004924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 690 | 
| Alignm identity: | 490 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 102 | 
| Conread position: | 92-727 | 
| Cow position: | chr6:55688661-55689256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 642 | 
| Alignm identity: | 427 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 283, 48 | 
| Conread position: | 93-765 | 
| Cow position: | chr6:6060946-6060306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 678 | 
| Alignm identity: | 474 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 366, 91 | 
| Conread position: | 100-598 | 
| Cow position: | chr6:25407786-25407287 (view UCSC Genome Browser custom track) | 
| Alignm length: | 511 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 163, 48 | 
| Conread position: | 106-463 | 
| Cow position: | chr6:55608188-55607841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 81 | 
| Conread position: | 111-598 | 
| Cow position: | chr6:14958713-14958236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 265, 73 | 
| Conread position: | 111-740 | 
| Cow position: | chr6:8804914-8804303 (view UCSC Genome Browser custom track) | 
| Alignm length: | 646 | 
| Alignm identity: | 471 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 73 | 
| Conread position: | 116-739 | 
| Cow position: | chr6:52431399-52430780 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 428 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 259, 73 | 
| Conread position: | 123-743 | 
| Cow position: | chr6:2546885-2547504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 641 | 
| Alignm identity: | 438 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 252, 51 | 
| Conread position: | 124-744 | 
| Cow position: | chr6:61268977-61269561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 629 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 57 | 
| Conread position: | 129-602 | 
| Cow position: | chr6:24004193-24004644 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 56 | 
| Conread position: | 130-596 | 
| Cow position: | chr6:63047224-63047694 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 55 | 
| Conread position: | 131-719 | 
| Cow position: | chr6:35842310-35842879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 598 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 283, 56 | 
| Conread position: | 133-599 | 
| Cow position: | chr6:55474901-55475360 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 289, 50 | 
| Conread position: | 134-448 | 
| Cow position: | chr6:12844961-12845267 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 51 | 
| Conread position: | 134-744 | 
| Cow position: | chr6:35990574-35989995 (view UCSC Genome Browser custom track) | 
| Alignm length: | 619 | 
| Alignm identity: | 436 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 112, 25 | 
| Conread position: | 134-760 | 
| Cow position: | chr6:39916830-39917432 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 389 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 127, 18 | 
| Conread position: | 135-535 | 
| Cow position: | chr6:20231168-20230785 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 288, 20 | 
| Conread position: | 135-746 | 
| Cow position: | chr6:15305241-15305817 (view UCSC Genome Browser custom track) | 
| Alignm length: | 618 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 58 | 
| Conread position: | 135-747 | 
| Cow position: | chr6:47304980-47305591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 630 | 
| Alignm identity: | 442 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 58 | 
| Conread position: | 140-673 | 
| Cow position: | chr6:66532144-66531636 (view UCSC Genome Browser custom track) | 
| Alignm length: | 544 | 
| Alignm identity: | 373 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 39 | 
| Conread position: | 148-560 | 
| Cow position: | chr6:5672896-5673313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 40 | 
| Conread position: | 148-594 | 
| Cow position: | chr6:456847-457275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 36 | 
| Conread position: | 150-586 | 
| Cow position: | chr6:28148512-28148924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 16, 35 | 
| Conread position: | 150-764 | 
| Cow position: | chr6:10176630-10176035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 621 | 
| Alignm identity: | 448 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 237, 34 | 
| Conread position: | 152-743 | 
| Cow position: | chr6:54140489-54141063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 611 | 
| Alignm identity: | 432 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 405, 16 | 
| Conread position: | 155-558 | 
| Cow position: | chr6:50446086-50445702 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 261, 29 | 
| Conread position: | 170-503 | 
| Cow position: | chr6:40264511-40264188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 287, 14 | 
| Conread position: | 174-726 | 
| Cow position: | chr6:21587729-21587208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 559 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 201, 10 | 
| Conread position: | 196-598 | 
| Cow position: | chr6:57164136-57164533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 82 | 
| Conread position: | 202-562 | 
| Cow position: | chr6:58315762-58316117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 203, 96 | 
| Conread position: | 202-592 | 
| Cow position: | chr6:54369181-54368806 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 254, 50 | 
| Conread position: | 202-598 | 
| Cow position: | chr6:19681801-19681421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 154, 60 | 
| Conread position: | 202-598 | 
| Cow position: | chr6:54867227-54867621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 154, 48 | 
| Conread position: | 202-606 | 
| Cow position: | chr6:12500572-12500955 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 98 | 
| Conread position: | 202-734 | 
| Cow position: | chr6:34196433-34195928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 537 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 255, 63 | 
| Conread position: | 202-758 | 
| Cow position: | chr6:12337700-12338250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 565 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 221, 63 | 
| Conread position: | 202-758 | 
| Cow position: | chr6:47519766-47520315 (view UCSC Genome Browser custom track) | 
| Alignm length: | 567 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 173, 63 | 
| Conread position: | 202-759 | 
| Cow position: | chr6:46557773-46558310 (view UCSC Genome Browser custom track) | 
| Alignm length: | 562 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 63 | 
| Conread position: | 202-764 | 
| Cow position: | chr6:6201163-6201697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 574 | 
| Alignm identity: | 396 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 41 | 
| Conread position: | 202-765 | 
| Cow position: | chr6:60057950-60057374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 81 | 
| Conread position: | 208-454 | 
| Cow position: | chr6:28559140-28559385 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 167, 28 | 
| Conread position: | 208-598 | 
| Cow position: | chr6:19330033-19329663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 36 | 
| Conread position: | 208-598 | 
| Cow position: | chr6:63272896-63272507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 99 | 
| Conread position: | 208-758 | 
| Cow position: | chr6:7131150-7130605 (view UCSC Genome Browser custom track) | 
| Alignm length: | 572 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 329, 57 | 
| Conread position: | 208-767 | 
| Cow position: | chr6:22332677-22332128 (view UCSC Genome Browser custom track) | 
| Alignm length: | 565 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 55 | 
| Conread position: | 209-463 | 
| Cow position: | chr6:19508709-19508469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 65, 43 | 
| Conread position: | 210-747 | 
| Cow position: | chr6:15938141-15937605 (view UCSC Genome Browser custom track) | 
| Alignm length: | 557 | 
| Alignm identity: | 389 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 99 | 
| Conread position: | 210-758 | 
| Cow position: | chr6:6264369-6264911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 563 | 
| Alignm identity: | 385 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 43 | 
| Conread position: | 210-771 | 
| Cow position: | chr6:60859580-60859027 (view UCSC Genome Browser custom track) | 
| Alignm length: | 573 | 
| Alignm identity: | 386 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 165, 35 | 
| Conread position: | 212-551 | 
| Cow position: | chr6:42961642-42961300 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 53 | 
| Conread position: | 212-767 | 
| Cow position: | chr6:50746702-50747268 (view UCSC Genome Browser custom track) | 
| Alignm length: | 578 | 
| Alignm identity: | 416 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 89 | 
| Conread position: | 212-781 | 
| Cow position: | chr6:60473859-60474420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 578 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 211, 53 | 
| Conread position: | 214-546 | 
| Cow position: | chr6:47150506-47150842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 198, 51 | 
| Conread position: | 214-765 | 
| Cow position: | chr6:54365596-54365067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 555 | 
| Alignm identity: | 397 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 51 | 
| Conread position: | 215-760 | 
| Cow position: | chr6:16746058-16746606 (view UCSC Genome Browser custom track) | 
| Alignm length: | 561 | 
| Alignm identity: | 373 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 99 | 
| Conread position: | 215-761 | 
| Cow position: | chr6:48281723-48282256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 552 | 
| Alignm identity: | 386 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 142, 48 | 
| Conread position: | 218-567 | 
| Cow position: | chr6:59688571-59688220 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 154, 47 | 
| Conread position: | 218-744 | 
| Cow position: | chr6:35471795-35471269 (view UCSC Genome Browser custom track) | 
| Alignm length: | 545 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 47 | 
| Conread position: | 220-602 | 
| Cow position: | chr6:52248404-52248022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 83 | 
| Conread position: | 222-599 | 
| Cow position: | chr6:40713763-40713398 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 166, 19 | 
| Conread position: | 223-759 | 
| Cow position: | chr6:61515461-61514939 (view UCSC Genome Browser custom track) | 
| Alignm length: | 547 | 
| Alignm identity: | 403 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 163, 50 | 
| Conread position: | 225-508 | 
| Cow position: | chr6:54293849-54294121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 232, 47 | 
| Conread position: | 226-472 | 
| Cow position: | chr6:11529246-11529489 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 74, 15 | 
| Conread position: | 226-745 | 
| Cow position: | chr6:49422043-49421552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 10, 17 | 
| Conread position: | 228-759 | 
| Cow position: | chr6:64449133-64449618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 534 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 198, 37 | 
| Conread position: | 231-521 | 
| Cow position: | chr6:2423493-2423772 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 239, 34 | 
| Conread position: | 232-767 | 
| Cow position: | chr6:3952270-3952787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 537 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 224, 33 | 
| Conread position: | 236-604 | 
| Cow position: | chr6:27110338-27110708 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 14, 24 | 
| Conread position: | 237-448 | 
| Cow position: | chr6:17068070-17067863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 29 | 
| Conread position: | 238-567 | 
| Cow position: | chr6:11829917-11830269 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 137, 27 | 
| Conread position: | 238-764 | 
| Cow position: | chr6:31535821-31535308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 533 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 139, 68 | 
| Conread position: | 241-743 | 
| Cow position: | chr6:15242590-15243081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 512 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 134, 24 | 
| Conread position: | 242-735 | 
| Cow position: | chr6:38853903-38853421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 30 | 
| Conread position: | 246-739 | 
| Cow position: | chr6:9736880-9736406 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 27 | 
| Conread position: | 246-750 | 
| Cow position: | chr6:61113509-61114015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 521 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 129, 19 | 
| Conread position: | 247-731 | 
| Cow position: | chr6:41375513-41376001 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 26 | 
| Conread position: | 250-550 | 
| Cow position: | chr6:32335580-32335855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 175, 15 | 
| Conread position: | 250-598 | 
| Cow position: | chr6:54600131-54600452 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 206, 15 | 
| Conread position: | 250-745 | 
| Cow position: | chr6:13040215-13040698 (view UCSC Genome Browser custom track) | 
| Alignm length: | 508 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 121, 23 | 
| Conread position: | 254-485 | 
| Cow position: | chr6:54885146-54884917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 11 | 
| Conread position: | 256-736 | 
| Cow position: | chr6:29239712-29240168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 17 | 
| Conread position: | 256-736 | 
| Cow position: | chr6:34475774-34475322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 131, 16 | 
| Conread position: | 259-566 | 
| Cow position: | chr6:7824533-7824838 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 118, 34 | 
| Conread position: | 259-598 | 
| Cow position: | chr6:60350529-60350188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 116, 40 | 
| Conread position: | 259-740 | 
| Cow position: | chr6:14949711-14949251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 47 | 
| Conread position: | 259-742 | 
| Cow position: | chr6:16103432-16102949 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 153, 40 | 
| Conread position: | 260-739 | 
| Cow position: | chr6:21869874-21869389 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 243, 42 | 
| Conread position: | 260-752 | 
| Cow position: | chr6:51581488-51581004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 23, 47 | 
| Conread position: | 261-454 | 
| Cow position: | chr6:59302052-59301859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 107, 16 | 
| Conread position: | 261-592 | 
| Cow position: | chr6:32677300-32676984 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 124, 38 | 
| Conread position: | 261-744 | 
| Cow position: | chr6:65903846-65903382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 43 | 
| Conread position: | 262-438 | 
| Cow position: | chr6:6164426-6164598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 104, 40 | 
| Conread position: | 262-740 | 
| Cow position: | chr6:50983981-50984458 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 140 | 
| Conread position: | 263-550 | 
| Cow position: | chr6:45160517-45160242 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 193, 42 | 
| Conread position: | 263-567 | 
| Cow position: | chr6:38614598-38614892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 193, 36 | 
| Conread position: | 263-728 | 
| Cow position: | chr6:38207719-38207258 (view UCSC Genome Browser custom track) | 
| Alignm length: | 477 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 10 | 
| Conread position: | 264-758 | 
| Cow position: | chr6:6063504-6063032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 38 | 
| Conread position: | 265-477 | 
| Cow position: | chr6:20605710-20605921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 40 | 
| Conread position: | 265-561 | 
| Cow position: | chr6:60239612-60239328 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 106, 23 | 
| Conread position: | 265-598 | 
| Cow position: | chr6:130388-130059 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 37 | 
| Conread position: | 265-598 | 
| Cow position: | chr6:66874138-66874455 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 34 | 
| Conread position: | 265-738 | 
| Cow position: | chr6:46865823-46865346 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 234 | 
| Conread position: | 266-558 | 
| Cow position: | chr6:49685362-49685648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 188, 31 | 
| Conread position: | 266-562 | 
| Cow position: | chr6:5445406-5445691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 30, 40 | 
| Conread position: | 266-598 | 
| Cow position: | chr6:49002947-49002636 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 190, 36 | 
| Conread position: | 266-727 | 
| Cow position: | chr6:41733404-41733862 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 37 | 
| Conread position: | 266-743 | 
| Cow position: | chr6:24468615-24468156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 36 | 
| Conread position: | 267-743 | 
| Cow position: | chr6:4383271-4383716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 189, 38 | 
| Conread position: | 268-598 | 
| Cow position: | chr6:51893734-51893396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 166 | 
| Conread position: | 268-657 | 
| Cow position: | chr6:68049215-68049599 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 312, 34 | 
| Conread position: | 268-747 | 
| Cow position: | chr6:7190340-7189884 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 188, 31 | 
| Conread position: | 268-768 | 
| Cow position: | chr6:7539352-7539841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 187, 34 | 
| Conread position: | 269-475 | 
| Cow position: | chr6:7694573-7694365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 106, 33 | 
| Conread position: | 269-747 | 
| Cow position: | chr6:55282509-55282045 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 33 | 
| Conread position: | 270-437 | 
| Cow position: | chr6:21184737-21184902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 96, 29 | 
| Conread position: | 270-744 | 
| Cow position: | chr6:54490959-54490502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 142, 32 | 
| Conread position: | 270-746 | 
| Cow position: | chr6:15301036-15300594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 186, 27 | 
| Conread position: | 270-746 | 
| Cow position: | chr6:35435784-35436233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 186, 32 | 
| Conread position: | 272-746 | 
| Cow position: | chr6:21456906-21456432 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 103, 31 | 
| Conread position: | 273-766 | 
| Cow position: | chr6:17997531-17997049 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 183, 20 | 
| Conread position: | 274-473 | 
| Cow position: | chr6:55366538-55366335 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 103, 167 | 
| Conread position: | 274-550 | 
| Cow position: | chr6:67304587-67304861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 28 | 
| Conread position: | 274-554 | 
| Cow position: | chr6:5462263-5461997 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 232, 28 | 
| Conread position: | 274-554 | 
| Cow position: | chr6:48344113-48344392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 28 | 
| Conread position: | 274-584 | 
| Cow position: | chr6:242599-242891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 28 | 
| Conread position: | 274-597 | 
| Cow position: | chr6:53651825-53652143 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 28 | 
| Conread position: | 274-599 | 
| Cow position: | chr6:45065221-45064912 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 58, 25 | 
| Conread position: | 274-742 | 
| Cow position: | chr6:66433733-66434196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 25 | 
| Conread position: | 274-747 | 
| Cow position: | chr6:50090425-50090892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 28 | 
| Conread position: | 274-748 | 
| Cow position: | chr6:37199764-37199268 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 233 | 
| Conread position: | 274-753 | 
| Cow position: | chr6:53460786-53460318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 183, 26 | 
| Conread position: | 274-756 | 
| Cow position: | chr6:49734173-49734654 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 100, 24 | 
| Conread position: | 276-476 | 
| Cow position: | chr6:21110756-21110949 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 180, 23 | 
| Conread position: | 276-594 | 
| Cow position: | chr6:56376560-56376248 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 180, 23 | 
| Conread position: | 276-741 | 
| Cow position: | chr6:38440969-38441421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 180, 23 | 
| Conread position: | 277-466 | 
| Cow position: | chr6:37603308-37603495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 14, 145 | 
| Conread position: | 277-744 | 
| Cow position: | chr6:57405336-57404892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 22 | 
| Conread position: | 278-533 | 
| Cow position: | chr6:46400616-46400374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 178, 28 | 
| Conread position: | 278-747 | 
| Cow position: | chr6:53139140-53138691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 28 | 
| Conread position: | 279-764 | 
| Cow position: | chr6:67456493-67457003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 20 | 
| Conread position: | 281-598 | 
| Cow position: | chr6:54864874-54864557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 175, 21 | 
| Conread position: | 281-654 | 
| Cow position: | chr6:7989621-7989254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 18 | 
| Conread position: | 281-758 | 
| Cow position: | chr6:21231329-21231773 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 5 | 
| Conread position: | 282-720 | 
| Cow position: | chr6:19695600-19696029 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 20 | 
| Conread position: | 283-716 | 
| Cow position: | chr6:38641292-38641710 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 173, 16 | 
| Conread position: | 283-726 | 
| Cow position: | chr6:5114254-5113821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 34 | 
| Conread position: | 284-763 | 
| Cow position: | chr6:20157120-20157597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 15 | 
| Conread position: | 286-517 | 
| Cow position: | chr6:48425524-48425295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 121, 13 | 
| Conread position: | 286-735 | 
| Cow position: | chr6:66131105-66131554 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 137, 13 | 
| Conread position: | 287-540 | 
| Cow position: | chr6:52025857-52025604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 169, 12 | 
| Conread position: | 287-583 | 
| Cow position: | chr6:14850917-14850626 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 169, 12 | 
| Conread position: | 287-746 | 
| Cow position: | chr6:10400097-10399663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 0 | 
| Conread position: | 288-466 | 
| Cow position: | chr6:46245524-46245343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 90, 11 | 
| Conread position: | 290-744 | 
| Cow position: | chr6:29484890-29485327 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 289, 24 | 
| Conread position: | 290-754 | 
| Cow position: | chr6:55546359-55545918 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 166, 12 | 
| Conread position: | 291-598 | 
| Cow position: | chr6:22503120-22502807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 14 | 
| Conread position: | 292-595 | 
| Cow position: | chr6:16423499-16423803 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 11, 104 | 
| Conread position: | 292-746 | 
| Cow position: | chr6:143595-143132 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 78, 10 | 
| Conread position: | 293-451 | 
| Cow position: | chr6:36011497-36011648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 293-524 | 
| Cow position: | chr6:8187717-8187490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 7e-34 | 
| Alignm gaps (pig, cow): | 82, 109 | 
| Conread position: | 293-556 | 
| Cow position: | chr6:53731323-53731586 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 163, 129 | 
| Conread position: | 293-739 | 
| Cow position: | chr6:7128600-7128165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 42, 98 | 
| Conread position: | 294-579 | 
| Cow position: | chr6:16191470-16191763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 16 | 
| Conread position: | 295-598 | 
| Cow position: | chr6:63299219-63298927 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 80, 17 | 
| Conread position: | 296-489 | 
| Cow position: | chr6:33276844-33277040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 79, 49 | 
| Conread position: | 296-725 | 
| Cow position: | chr6:12092179-12091761 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 67 | 
| Conread position: | 296-730 | 
| Cow position: | chr6:58732509-58732070 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 66, 247 | 
| Conread position: | 296-749 | 
| Cow position: | chr6:48187776-48187325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 466 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 82, 70 | 
| Conread position: | 299-744 | 
| Cow position: | chr6:32269062-32268643 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 57, 29 | 
| Conread position: | 299-746 | 
| Cow position: | chr6:53519815-53519382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 97 | 
| Conread position: | 299-751 | 
| Cow position: | chr6:37149002-37149433 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 11 | 
| Conread position: | 302-598 | 
| Cow position: | chr6:8788226-8787933 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 154, 84 | 
| Conread position: | 302-719 | 
| Cow position: | chr6:52412665-52413081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 194 | 
| Conread position: | 302-747 | 
| Cow position: | chr6:63252112-63251674 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 154, 189 | 
| Conread position: | 303-598 | 
| Cow position: | chr6:47799110-47799397 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 153, 51 | 
| Conread position: | 303-598 | 
| Cow position: | chr6:65259655-65259387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 8e-25 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 303-757 | 
| Cow position: | chr6:50577332-50577771 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 72, 122 | 
| Conread position: | 306-573 | 
| Cow position: | chr6:415909-416187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 5.99756e-43 | 
| Alignm gaps (pig, cow): | 69, 120 | 
| Conread position: | 309-600 | 
| Cow position: | chr6:25008532-25008826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 142, 94 | 
| Conread position: | 309-609 | 
| Cow position: | chr6:26910051-26909760 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 66, 54 | 
| Conread position: | 310-767 | 
| Cow position: | chr6:32518054-32517619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 69, 148 | 
| Conread position: | 311-765 | 
| Cow position: | chr6:37783234-37783692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 33, 157 | 
| Conread position: | 312-543 | 
| Cow position: | chr6:18968952-18968731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 144, 28 | 
| Conread position: | 312-770 | 
| Cow position: | chr6:1703635-1704063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 464 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 65, 115 | 
| Conread position: | 313-598 | 
| Cow position: | chr6:54936399-54936683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 42, 198 | 
| Conread position: | 315-574 | 
| Cow position: | chr6:19012893-19013151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 141, 64 | 
| Conread position: | 316-562 | 
| Cow position: | chr6:9838987-9839240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 91, 181 | 
| Conread position: | 316-567 | 
| Cow position: | chr6:65947263-65947000 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 6e-22 | 
| Alignm gaps (pig, cow): | 59, 220 | 
| Conread position: | 316-763 | 
| Cow position: | chr6:59104433-59104870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 140, 91 | 
| Conread position: | 317-740 | 
| Cow position: | chr6:78086-77697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 60, 109 | 
| Conread position: | 317-741 | 
| Cow position: | chr6:60819341-60819756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 139, 107 | 
| Conread position: | 317-766 | 
| Cow position: | chr6:35993403-35993876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 159 | 
| Conread position: | 318-740 | 
| Cow position: | chr6:12668934-12669338 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 323, 47 | 
| Conread position: | 318-752 | 
| Cow position: | chr6:65264708-65264299 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 138, 51 | 
| Conread position: | 319-598 | 
| Cow position: | chr6:17334229-17333949 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 59, 176 | 
| Conread position: | 319-754 | 
| Cow position: | chr6:47355652-47356080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 137, 104 | 
| Conread position: | 320-533 | 
| Cow position: | chr6:54287909-54288111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 136, 43 | 
| Conread position: | 321-741 | 
| Cow position: | chr6:15447378-15446952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 105 | 
| Conread position: | 322-742 | 
| Cow position: | chr6:11246595-11247010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 134, 40 | 
| Conread position: | 322-763 | 
| Cow position: | chr6:53453599-53454029 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 172 | 
| Conread position: | 323-516 | 
| Cow position: | chr6:58364180-58363986 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 55, 101 | 
| Conread position: | 323-745 | 
| Cow position: | chr6:19446092-19446498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 265, 45 | 
| Conread position: | 324-547 | 
| Cow position: | chr6:16764809-16764604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 64, 0 | 
| Conread position: | 326-599 | 
| Cow position: | chr6:12543098-12542825 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 95 | 
| Conread position: | 327-744 | 
| Cow position: | chr6:3595629-3596038 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 11, 56 | 
| Conread position: | 327-744 | 
| Cow position: | chr6:26450153-26450543 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 48, 100 | 
| Conread position: | 328-582 | 
| Cow position: | chr6:44984163-44984421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 97 | 
| Conread position: | 328-598 | 
| Cow position: | chr6:31854189-31854458 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 47, 116 | 
| Conread position: | 328-746 | 
| Cow position: | chr6:14914402-14913988 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 35 | 
| Conread position: | 328-764 | 
| Cow position: | chr6:60783707-60784132 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 56 | 
| Conread position: | 329-747 | 
| Cow position: | chr6:24934792-24934365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 46, 99 | 
| Conread position: | 331-555 | 
| Cow position: | chr6:40834633-40834407 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 7e-34 | 
| Alignm gaps (pig, cow): | 44, 96 | 
| Conread position: | 331-561 | 
| Cow position: | chr6:49694215-49694446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 55, 162 | 
| Conread position: | 331-598 | 
| Cow position: | chr6:55763694-55763957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 125, 61 | 
| Conread position: | 331-741 | 
| Cow position: | chr6:57546376-57545988 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 29, 90 | 
| Conread position: | 331-757 | 
| Cow position: | chr6:27888188-27888600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 64 | 
| Conread position: | 335-729 | 
| Cow position: | chr6:60739859-60740239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 121, 87 | 
| Conread position: | 336-598 | 
| Cow position: | chr6:67323161-67323413 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 337-748 | 
| Cow position: | chr6:12964695-12965102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 14, 95 | 
| Conread position: | 339-744 | 
| Cow position: | chr6:4692136-4691725 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 87 | 
| Conread position: | 340-745 | 
| Cow position: | chr6:67574256-67574635 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 61, 46 | 
| Conread position: | 340-746 | 
| Cow position: | chr6:58370593-58370993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 61, 19 | 
| Conread position: | 342-740 | 
| Cow position: | chr6:9219124-9219503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 114, 82 | 
| Conread position: | 343-747 | 
| Cow position: | chr6:46283146-46282746 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 154, 30 | 
| Conread position: | 343-748 | 
| Cow position: | chr6:17313582-17313986 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 83 | 
| Conread position: | 345-524 | 
| Cow position: | chr6:29266059-29266234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 111, 41 | 
| Conread position: | 345-598 | 
| Cow position: | chr6:16316160-16316420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 48, 41 | 
| Conread position: | 346-714 | 
| Cow position: | chr6:47833263-47832898 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 31, 114 | 
| Conread position: | 346-761 | 
| Cow position: | chr6:10225785-10225387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 7, 77 | 
| Conread position: | 347-736 | 
| Cow position: | chr6:19996476-19996851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 40 | 
| Conread position: | 349-598 | 
| Cow position: | chr6:582414-582169 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 16, 72 | 
| Conread position: | 350-479 | 
| Cow position: | chr6:50509537-50509663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 73, 0 | 
| Conread position: | 350-736 | 
| Cow position: | chr6:4559444-4559067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 106, 31 | 
| Conread position: | 350-736 | 
| Cow position: | chr6:38609827-38610210 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 74 | 
| Conread position: | 354-489 | 
| Cow position: | chr6:62017395-62017530 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 102, 68 | 
| Conread position: | 354-598 | 
| Cow position: | chr6:67618091-67617844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 102, 9 | 
| Conread position: | 354-745 | 
| Cow position: | chr6:48803773-48803395 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 41, 8 | 
| Conread position: | 354-765 | 
| Cow position: | chr6:1371367-1370966 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 23, 9 | 
| Conread position: | 355-735 | 
| Cow position: | chr6:60118010-60118377 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 134 | 
| Conread position: | 355-747 | 
| Cow position: | chr6:48988301-48988681 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 68, 134 | 
| Conread position: | 356-598 | 
| Cow position: | chr6:3081265-3081012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 67, 99 | 
| Conread position: | 356-646 | 
| Cow position: | chr6:60667286-60667571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 100, 30 | 
| Conread position: | 356-768 | 
| Cow position: | chr6:21399892-21399488 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 19, 102 | 
| Conread position: | 359-736 | 
| Cow position: | chr6:46173388-46173022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 58, 20 | 
| Conread position: | 360-760 | 
| Cow position: | chr6:55209425-55209821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 63, 127 | 
| Conread position: | 364-560 | 
| Cow position: | chr6:57298889-57299081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 92, 126 | 
| Conread position: | 364-566 | 
| Cow position: | chr6:5413692-5413894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 34, 129 | 
| Conread position: | 365-740 | 
| Cow position: | chr6:50467009-50467378 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 91, 103 | 
| Conread position: | 367-763 | 
| Cow position: | chr6:23402113-23401730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 90, 55 | 
| Conread position: | 368-539 | 
| Cow position: | chr6:358013-357841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 88, 121 | 
| Conread position: | 368-550 | 
| Cow position: | chr6:33150529-33150352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 88, 53 | 
| Conread position: | 368-552 | 
| Cow position: | chr6:19351277-19351100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 89, 53 | 
| Conread position: | 368-703 | 
| Cow position: | chr6:36189574-36189903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 87, 54 | 
| Conread position: | 368-760 | 
| Cow position: | chr6:62929373-62929759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 57, 72 | 
| Conread position: | 368-761 | 
| Cow position: | chr6:62669751-62670134 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 88, 17 | 
| Conread position: | 369-597 | 
| Cow position: | chr6:377007-377228 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 87, 53 | 
| Conread position: | 369-747 | 
| Cow position: | chr6:7119732-7119383 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 52, 0 | 
| Conread position: | 369-760 | 
| Cow position: | chr6:16266597-16266988 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 257 | 
| Conread position: | 370-519 | 
| Cow position: | chr6:44540563-44540415 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 36, 86 | 
| Conread position: | 370-727 | 
| Cow position: | chr6:16261665-16262008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 53, 21 | 
| Conread position: | 370-761 | 
| Cow position: | chr6:17704698-17705095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 53, 266 | 
| Conread position: | 372-649 | 
| Cow position: | chr6:61644955-61644684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 10, 17 | 
| Conread position: | 373-571 | 
| Cow position: | chr6:46998262-46998062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 35, 11 | 
| Conread position: | 373-740 | 
| Cow position: | chr6:22850363-22850012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 264, 51 | 
| Conread position: | 374-591 | 
| Cow position: | chr6:12845262-12845474 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 38, 122 | 
| Conread position: | 377-598 | 
| Cow position: | chr6:58597618-58597402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 133, 44 | 
| Conread position: | 377-765 | 
| Cow position: | chr6:21514733-21514321 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 30, 124 | 
| Conread position: | 379-575 | 
| Cow position: | chr6:44127494-44127692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 77, 43 | 
| Conread position: | 379-740 | 
| Cow position: | chr6:10039609-10039966 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 45, 78 | 
| Conread position: | 379-745 | 
| Cow position: | chr6:8161810-8161440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 6e-22 | 
| Alignm gaps (pig, cow): | 45, 118 | 
| Conread position: | 381-567 | 
| Cow position: | chr6:6672992-6673175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 17, 23 | 
| Conread position: | 381-759 | 
| Cow position: | chr6:59603317-59602959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 79, 40 | 
| Conread position: | 382-764 | 
| Cow position: | chr6:54208248-54207871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 74, 220 | 
| Conread position: | 386-736 | 
| Cow position: | chr6:36645283-36645610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 67, 79 | 
| Conread position: | 386-740 | 
| Cow position: | chr6:62371286-62370947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 26, 112 | 
| Conread position: | 386-743 | 
| Cow position: | chr6:59718691-59719054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 5.99756e-43 | 
| Alignm gaps (pig, cow): | 70, 35 | 
| Conread position: | 387-505 | 
| Cow position: | chr6:14153224-14153110 (view UCSC Genome Browser custom track) | 
| Alignm length: | 119 | 
| Alignm identity: | 96 | 
| Alignm E-value: | 6e-22 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 388-757 | 
| Cow position: | chr6:17549084-17548713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 68, 19 | 
| Conread position: | 389-747 | 
| Cow position: | chr6:1429537-1429881 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 52, 32 | 
| Conread position: | 390-664 | 
| Cow position: | chr6:3592300-3592588 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 115, 34 | 
| Conread position: | 391-766 | 
| Cow position: | chr6:27240106-27239740 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 65, 30 | 
| Conread position: | 392-733 | 
| Cow position: | chr6:17794855-17794522 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 208, 30 | 
| Conread position: | 395-765 | 
| Cow position: | chr6:19292702-19293062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 61, 27 | 
| Conread position: | 396-734 | 
| Cow position: | chr6:44867636-44867312 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 5e-31 | 
| Alignm gaps (pig, cow): | 60, 34 | 
| Conread position: | 398-598 | 
| Cow position: | chr6:58608538-58608340 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 14, 97 | 
| Conread position: | 399-593 | 
| Cow position: | chr6:54365097-54364893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 57, 94 | 
| Conread position: | 400-597 | 
| Cow position: | chr6:10487496-10487691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 57, 23 | 
| Conread position: | 400-747 | 
| Cow position: | chr6:19045533-19045875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 56, 103 | 
| Conread position: | 403-757 | 
| Cow position: | chr6:24110196-24110541 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 55 | 
| Conread position: | 403-760 | 
| Cow position: | chr6:28559436-28559801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 52, 66 | 
| Conread position: | 403-761 | 
| Cow position: | chr6:2584846-2585201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 24, 100 | 
| Conread position: | 408-598 | 
| Cow position: | chr6:2153676-2153495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 22, 0 | 
| Conread position: | 408-747 | 
| Cow position: | chr6:22985944-22985615 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 15, 198 | 
| Conread position: | 408-775 | 
| Cow position: | chr6:33509705-33510058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 48, 93 | 
| Conread position: | 409-764 | 
| Cow position: | chr6:5330332-5330682 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 14 | 
| Conread position: | 414-742 | 
| Cow position: | chr6:8599926-8600247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 42, 77 | 
| Conread position: | 414-743 | 
| Cow position: | chr6:16288131-16287825 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 7e-34 | 
| Alignm gaps (pig, cow): | 42, 86 | 
| Conread position: | 415-749 | 
| Cow position: | chr6:37462944-37463254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 89, 42 | 
| Conread position: | 415-752 | 
| Cow position: | chr6:60274086-60273758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 9e-26 | 
| Alignm gaps (pig, cow): | 41, 25 | 
| Conread position: | 415-756 | 
| Cow position: | chr6:13565006-13565340 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 41, 76 | 
| Conread position: | 416-748 | 
| Cow position: | chr6:60150788-60150454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 40, 27 | 
| Conread position: | 416-752 | 
| Cow position: | chr6:24339207-24339545 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 9e-26 | 
| Alignm gaps (pig, cow): | 40, 29 | 
| Conread position: | 417-599 | 
| Cow position: | chr6:33929626-33929442 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 39, 74 | 
| Conread position: | 417-739 | 
| Cow position: | chr6:694223-693906 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 39, 50 | 
| Conread position: | 417-765 | 
| Cow position: | chr6:37395483-37395141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 9 | 
| Conread position: | 419-739 | 
| Cow position: | chr6:581818-581501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 37, 74 | 
| Conread position: | 420-674 | 
| Cow position: | chr6:36284169-36284424 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 36, 74 | 
| Conread position: | 420-759 | 
| Cow position: | chr6:23353480-23353814 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 78 | 
| Conread position: | 422-739 | 
| Cow position: | chr6:17068720-17068416 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 6e-22 | 
| Alignm gaps (pig, cow): | 34, 95 | 
| Conread position: | 424-660 | 
| Cow position: | chr6:61142633-61142390 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 32, 80 | 
| Conread position: | 424-743 | 
| Cow position: | chr6:18118121-18117807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 33, 84 | 
| Conread position: | 425-747 | 
| Cow position: | chr6:22215536-22215215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 31, 65 | 
| Conread position: | 429-741 | 
| Cow position: | chr6:35896404-35896087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 27, 53 | 
| Conread position: | 430-765 | 
| Cow position: | chr6:5845235-5844903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 28, 76 | 
| Conread position: | 434-760 | 
| Cow position: | chr6:51530245-51529930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 22, 66 | 
| Conread position: | 435-745 | 
| Cow position: | chr6:18144135-18144446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 21, 31 | 
| Conread position: | 436-750 | 
| Cow position: | chr6:6195168-6194852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 20, 173 | 
| Conread position: | 442-739 | 
| Cow position: | chr6:60144250-60143960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 14, 51 | 
| Conread position: | 443-708 | 
| Cow position: | chr6:48468954-48469219 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 13, 35 | 
| Conread position: | 445-765 | 
| Cow position: | chr6:50269719-50269418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 194, 11 | 
| Conread position: | 445-768 | 
| Cow position: | chr6:53145731-53145409 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 11, 59 | 
| Conread position: | 447-762 | 
| Cow position: | chr6:3350973-3351289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 6e-22 | 
| Alignm gaps (pig, cow): | 9, 161 | 
| Conread position: | 448-747 | 
| Cow position: | chr6:55417572-55417286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 8, 46 | 
| Conread position: | 448-753 | 
| Cow position: | chr6:2078865-2078561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 8e-25 | 
| Alignm gaps (pig, cow): | 8, 156 | 
| Conread position: | 449-739 | 
| Cow position: | chr6:62437370-62437656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 7, 34 | 
| Conread position: | 454-766 | 
| Cow position: | chr6:47958774-47959071 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 55, 33 | 
| Conread position: | 455-762 | 
| Cow position: | chr6:44623570-44623852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 49, 33 | 
| Conread position: | 459-743 | 
| Cow position: | chr6:8094324-8094043 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 136, 0 | 
| Conread position: | 462-765 | 
| Cow position: | chr6:47778843-47779143 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 9e-26 | 
| Alignm gaps (pig, cow): | 41, 30 | 
| Conread position: | 464-743 | 
| Cow position: | chr6:67451401-67451129 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 139, 0 | 
| Conread position: | 469-736 | 
| Cow position: | chr6:41015000-41014738 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 127, 23 | 
| Conread position: | 471-739 | 
| Cow position: | chr6:50504432-50504695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 39, 133 | 
| Conread position: | 471-751 | 
| Cow position: | chr6:18904074-18903786 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 129, 71 | 
| Conread position: | 472-784 | 
| Cow position: | chr6:50862920-50863233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 31, 20 | 
| Conread position: | 473-746 | 
| Cow position: | chr6:42567472-42567741 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 32, 19 | 
| Conread position: | 478-760 | 
| Cow position: | chr6:20219793-20219520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 27, 15 | 
| Conread position: | 480-747 | 
| Cow position: | chr6:35319146-35318886 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 12, 0 | 
| Conread position: | 481-764 | 
| Cow position: | chr6:32453375-32453650 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 119, 12 | 
| Conread position: | 489-770 | 
| Cow position: | chr6:21475719-21475995 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 24, 114 | 
| Conread position: | 489-773 | 
| Cow position: | chr6:47782855-47783139 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 16, 171 | 
| Conread position: | 490-744 | 
| Cow position: | chr6:47245778-47246026 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 110, 14 | 
| Conread position: | 490-760 | 
| Cow position: | chr6:55297098-55296831 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 143, 23 | 
| Conread position: | 490-764 | 
| Cow position: | chr6:1475340-1475598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 16, 108 | 
| Conread position: | 494-765 | 
| Cow position: | chr6:54846278-54846011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 106, 11 | 
| Conread position: | 500-742 | 
| Cow position: | chr6:30023892-30024119 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 10, 0 | 
| Conread position: | 503-736 | 
| Cow position: | chr6:57079432-57079662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 99, 0 | 
| Conread position: | 503-739 | 
| Cow position: | chr6:1941822-1941595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 85, 7 | 
| Conread position: | 505-767 | 
| Cow position: | chr6:55548523-55548269 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 162, 97 | 
| Conread position: | 510-747 | 
| Cow position: | chr6:66947802-66947573 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 8e-25 | 
| Alignm gaps (pig, cow): | 114, 44 | 
| Conread position: | 523-752 | 
| Cow position: | chr6:50883649-50883427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 34, 82 | 
| Conread position: | 523-762 | 
| Cow position: | chr6:66259758-66259999 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 9e-26 | 
| Alignm gaps (pig, cow): | 77, 116 | 
| Conread position: | 530-752 | 
| Cow position: | chr6:21184187-21183971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 70, 92 | 
| Conread position: | 531-763 | 
| Cow position: | chr6:29853028-29852792 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 69, 33 | 
| Conread position: | 532-747 | 
| Cow position: | chr6:34569445-34569663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 8e-25 | 
| Alignm gaps (pig, cow): | 68, 94 | 
| Conread position: | 534-747 | 
| Cow position: | chr6:53711442-53711650 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 67, 92 | 
| Conread position: | 536-776 | 
| Cow position: | chr6:60852602-60852358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 6e-22 | 
| Alignm gaps (pig, cow): | 64, 51 | 
| Conread position: | 537-749 | 
| Cow position: | chr6:62724598-62724807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 63, 89 | 
| Conread position: | 537-759 | 
| Cow position: | chr6:55044599-55044382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 63, 89 | 
| Conread position: | 544-748 | 
| Cow position: | chr6:59455063-59454855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 8e-25 | 
| Alignm gaps (pig, cow): | 56, 83 | 
| Conread position: | 544-760 | 
| Cow position: | chr6:16411661-16411873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 9, 19 | 
| Conread position: | 545-736 | 
| Cow position: | chr6:21083490-21083305 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 59, 0 | 
| Conread position: | 549-773 | 
| Cow position: | chr6:44544094-44543872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 115, 53 | 
| Conread position: | 551-743 | 
| Cow position: | chr6:36938924-36939117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 6e-22 | 
| Alignm gaps (pig, cow): | 49, 88 | 
| Conread position: | 595-752 | 
| Cow position: | chr6:18615466-18615303 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 597-739 | 
| Cow position: | chr6:20548631-20548777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 597-742 | 
| Cow position: | chr6:13327052-13326911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 87, 36 | 
| Conread position: | 597-743 | 
| Cow position: | chr6:35702222-35702084 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 48, 0 | 
| Conread position: | 597-763 | 
| Cow position: | chr6:38234354-38234521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 9e-26 | 
| Alignm gaps (pig, cow): | 17, 67 | 
| Conread position: | 610-742 | 
| Cow position: | chr6:60457391-60457523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 133 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 640-764 | 
| Cow position: | chr6:51019292-51019415 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 648-763 | 
| Cow position: | chr6:58636288-58636402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 116 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 10, 0 | 
| Conread position: | 652-762 | 
| Cow position: | chr6:26929290-26929181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 111 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 6, 0 | 
| Conread position: | 654-748 | 
| Cow position: | chr6:9046041-9045948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 95 | 
| Alignm identity: | 82 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 655-740 | 
| Cow position: | chr6:65831518-65831603 (view UCSC Genome Browser custom track) | 
| Alignm length: | 86 | 
| Alignm identity: | 75 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 657-758 | 
| Cow position: | chr6:23381509-23381409 (view UCSC Genome Browser custom track) | 
| Alignm length: | 102 | 
| Alignm identity: | 84 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 92, 0 | 
| Conread position: | 657-764 | 
| Cow position: | chr6:16762472-16762365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 108 | 
| Alignm identity: | 88 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 657-764 | 
| Cow position: | chr6:19681877-19681982 (view UCSC Genome Browser custom track) | 
| Alignm length: | 108 | 
| Alignm identity: | 88 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 9, 0 | 
Show alignments to all cow chromosomes.
