Non-Coding RNA Search

Cow genome map


           Conread name:
           Utr1-UTR01D050106
        

               Conread position:
               1-489
               

               Cow position:
               chrX:40452713-40452225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 8
               

               Conread position:
               1-521
               

               Cow position:
               chrX:35409180-35409674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               397
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               455, 80
               

               Conread position:
               1-541
               

               Cow position:
               chrX:38438994-38439515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 51
               

               Conread position:
               1-547
               

               Cow position:
               chrX:12115547-12116087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               556
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 183
               

               Conread position:
               1-554
               

               Cow position:
               chrX:17497602-17498132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               556
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               455, 180
               

               Conread position:
               1-558
               

               Cow position:
               chrX:35680851-35681393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 76
               

               Conread position:
               1-559
               

               Cow position:
               chrX:42462243-42461692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 181
               

               Conread position:
               1-563
               

               Cow position:
               chrX:9854779-9855354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               588
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 318
               

               Conread position:
               1-563
               

               Cow position:
               chrX:9953621-9954195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               589
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 188
               

               Conread position:
               1-567
               

               Cow position:
               chrX:1331442-1331999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               299, 78
               

               Conread position:
               1-590
               

               Cow position:
               chrX:45113140-45113702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 193
               

               Conread position:
               1-597
               

               Cow position:
               chrX:44874028-44873471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 165
               

               Conread position:
               1-598
               

               Cow position:
               chrX:7571409-7571996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 194
               

               Conread position:
               1-598
               

               Cow position:
               chrX:11073703-11073100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 52
               

               Conread position:
               1-598
               

               Cow position:
               chrX:11083104-11082531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 67
               

               Conread position:
               1-598
               

               Cow position:
               chrX:29289083-29289669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               374, 68
               

               Conread position:
               1-600
               

               Cow position:
               chrX:39558859-39558255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               620
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 23
               

               Conread position:
               1-601
               

               Cow position:
               chrX:20801279-20801863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 36
               

               Conread position:
               1-654
               

               Cow position:
               chrX:38227587-38226941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               665
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 186
               

               Conread position:
               1-701
               

               Cow position:
               chrX:28866478-28865814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               706
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 57
               

               Conread position:
               1-722
               

               Cow position:
               chrX:12309880-12309174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               733
               

               Alignm identity:
               528
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 125
               

               Conread position:
               1-734
               

               Cow position:
               chrX:31489017-31489744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               749
               

               Alignm identity:
               550
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 184
               

               Conread position:
               1-739
               

               Cow position:
               chrX:37489232-37489957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               759
               

               Alignm identity:
               545
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 101
               

               Conread position:
               1-741
               

               Cow position:
               chrX:9252665-9251933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               758
               

               Alignm identity:
               530
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               374, 110
               

               Conread position:
               1-741
               

               Cow position:
               chrX:12249308-12250045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               760
               

               Alignm identity:
               553
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 33
               

               Conread position:
               1-741
               

               Cow position:
               chrX:14884456-14883727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               748
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               374, 189
               

               Conread position:
               1-743
               

               Cow position:
               chrX:9651540-9650794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               769
               

               Alignm identity:
               524
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 193
               

               Conread position:
               1-745
               

               Cow position:
               chrX:38072261-38071519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               762
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               374, 180
               

               Conread position:
               1-746
               

               Cow position:
               chrX:42994129-42994831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               753
               

               Alignm identity:
               552
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               374, 35
               

               Conread position:
               1-747
               

               Cow position:
               chrX:13912599-13913311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               759
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 92
               

               Conread position:
               1-747
               

               Cow position:
               chrX:27443055-27442302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               777
               

               Alignm identity:
               544
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 200
               

               Conread position:
               1-748
               

               Cow position:
               chrX:6543763-6544482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               750
               

               Alignm identity:
               524
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               455, 89
               

               Conread position:
               1-748
               

               Cow position:
               chrX:7277439-7278143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               758
               

               Alignm identity:
               525
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 76
               

               Conread position:
               1-749
               

               Cow position:
               chrX:15007645-15006920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               752
               

               Alignm identity:
               531
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 183
               

               Conread position:
               1-752
               

               Cow position:
               chrX:12290243-12290959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               755
               

               Alignm identity:
               541
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               656, 187
               

               Conread position:
               1-756
               

               Cow position:
               chrX:35268401-35269101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               758
               

               Alignm identity:
               550
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               651, 52
               

               Conread position:
               1-757
               

               Cow position:
               chrX:31949423-31948688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               759
               

               Alignm identity:
               545
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               422, 56
               

               Conread position:
               1-760
               

               Cow position:
               chrX:27705099-27705836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               768
               

               Alignm identity:
               566
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 114
               

               Conread position:
               1-760
               

               Cow position:
               chrX:34564806-34565534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               768
               

               Alignm identity:
               542
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               456, 183
               

               Conread position:
               1-763
               

               Cow position:
               chrX:27446201-27446935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               772
               

               Alignm identity:
               548
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 79
               

               Conread position:
               1-764
               

               Cow position:
               chrX:5871823-5872585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               782
               

               Alignm identity:
               576
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               380, 97
               

               Conread position:
               1-764
               

               Cow position:
               chrX:41790930-41790177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               793
               

               Alignm identity:
               553
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 108
               

               Conread position:
               1-767
               

               Cow position:
               chrX:151409-152160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               777
               

               Alignm identity:
               542
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 117
               

               Conread position:
               1-769
               

               Cow position:
               chrX:40827240-40826494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               776
               

               Alignm identity:
               549
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 126
               

               Conread position:
               2-517
               

               Cow position:
               chrX:35609493-35610002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               373, 182
               

               Conread position:
               2-739
               

               Cow position:
               chrX:160935-161628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               742
               

               Alignm identity:
               537
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 111
               

               Conread position:
               2-740
               

               Cow position:
               chrX:21592794-21593520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               753
               

               Alignm identity:
               555
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               369, 75
               

               Conread position:
               2-747
               

               Cow position:
               chrX:38963620-38964333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               751
               

               Alignm identity:
               582
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 124
               

               Conread position:
               3-747
               

               Cow position:
               chrX:44054311-44055039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               757
               

               Alignm identity:
               546
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 191
               

               Conread position:
               5-591
               

               Cow position:
               chrX:35288164-35288737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 189
               

               Conread position:
               5-735
               

               Cow position:
               chrX:46533010-46532266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               756
               

               Alignm identity:
               555
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               250, 176
               

               Conread position:
               5-760
               

               Cow position:
               chrX:41879420-41878688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               766
               

               Alignm identity:
               555
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               360, 179
               

               Conread position:
               5-763
               

               Cow position:
               chrX:40481360-40480598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               784
               

               Alignm identity:
               582
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               370, 80
               

               Conread position:
               5-764
               

               Cow position:
               chrX:20340380-20339642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               767
               

               Alignm identity:
               572
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 135
               

               Conread position:
               7-539
               

               Cow position:
               chrX:3653286-3653793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               451, 61
               

               Conread position:
               9-464
               

               Cow position:
               chrX:4123349-4123797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 146
               

               Conread position:
               9-722
               

               Cow position:
               chrX:34238234-34238934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               722
               

               Alignm identity:
               525
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               501, 175
               

               Conread position:
               9-735
               

               Cow position:
               chrX:31261122-31260401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               745
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 68
               

               Conread position:
               10-734
               

               Cow position:
               chrX:28632962-28632259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               446, 164
               

               Conread position:
               13-570
               

               Cow position:
               chrX:13785865-13785297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               581
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 184
               

               Conread position:
               13-744
               

               Cow position:
               chrX:14974220-14973523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               746
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 181
               

               Conread position:
               13-757
               

               Cow position:
               chrX:31728976-31729682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               749
               

               Alignm identity:
               546
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               308, 171
               

               Conread position:
               16-752
               

               Cow position:
               chrX:34441926-34441212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               740
               

               Alignm identity:
               539
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               440, 172
               

               Conread position:
               17-730
               

               Cow position:
               chrX:18695403-18694703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               535
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 36
               

               Conread position:
               17-763
               

               Cow position:
               chrX:44192921-44192190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               761
               

               Alignm identity:
               534
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 134
               

               Conread position:
               19-735
               

               Cow position:
               chrX:17794517-17795203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               724
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 175
               

               Conread position:
               20-549
               

               Cow position:
               chrX:47379950-47379425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 176
               

               Conread position:
               20-598
               

               Cow position:
               chrX:26626170-26625580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 174
               

               Conread position:
               20-728
               

               Cow position:
               chrX:13868230-13868921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               721
               

               Alignm identity:
               517
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               392, 50
               

               Conread position:
               23-662
               

               Cow position:
               chrX:27516065-27516694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               652
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               276, 15
               

               Conread position:
               41-763
               

               Cow position:
               chrX:47873787-47873083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               733
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 129
               

               Conread position:
               43-466
               

               Cow position:
               chrX:45566156-45566597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               305
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               192, 149
               

               Conread position:
               43-729
               

               Cow position:
               chrX:8899573-8900237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               694
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               256, 105
               

               Conread position:
               44-744
               

               Cow position:
               chrX:38094976-38094293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               513
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               331, 137
               

               Conread position:
               44-771
               

               Cow position:
               chrX:23564248-23563531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               736
               

               Alignm identity:
               526
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               331, 144
               

               Conread position:
               50-694
               

               Cow position:
               chrX:42171744-42171102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               661
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 28
               

               Conread position:
               50-743
               

               Cow position:
               chrX:45967716-45968369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               699
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 132
               

               Conread position:
               54-600
               

               Cow position:
               chrX:28133908-28134432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               554
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               308, 130
               

               Conread position:
               54-693
               

               Cow position:
               chrX:4044299-4043674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               654
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 130
               

               Conread position:
               56-742
               

               Cow position:
               chrX:5017843-5017186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               697
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               400, 33
               

               Conread position:
               59-599
               

               Cow position:
               chrX:38936256-38936792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 18
               

               Conread position:
               65-609
               

               Cow position:
               chrX:26441210-26440685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               310, 119
               

               Conread position:
               69-579
               

               Cow position:
               chrX:11590048-11589516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 90
               

               Conread position:
               71-598
               

               Cow position:
               chrX:14599112-14599624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 122
               

               Conread position:
               72-727
               

               Cow position:
               chrX:29937657-29938307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               663
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               351, 14
               

               Conread position:
               72-752
               

               Cow position:
               chrX:21626383-21625708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               698
               

               Alignm identity:
               438
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               61, 113
               

               Conread position:
               72-759
               

               Cow position:
               chrX:32419767-32420458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               719
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 12
               

               Conread position:
               79-553
               

               Cow position:
               chrX:11581521-11581980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 95
               

               Conread position:
               80-704
               

               Cow position:
               chrX:34663275-34662653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               645
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 105
               

               Conread position:
               85-598
               

               Cow position:
               chrX:8796841-8797340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               290, 103
               

               Conread position:
               85-765
               

               Cow position:
               chrX:20888054-20887389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               697
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               322, 103
               

               Conread position:
               87-746
               

               Cow position:
               chrX:34376546-34377174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               666
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 69
               

               Conread position:
               93-566
               

               Cow position:
               chrX:7054134-7053673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               282, 55
               

               Conread position:
               93-591
               

               Cow position:
               chrX:42508046-42507564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 29
               

               Conread position:
               93-727
               

               Cow position:
               chrX:10831914-10831265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               664
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 95
               

               Conread position:
               111-562
               

               Cow position:
               chrX:25419548-25419093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 77
               

               Conread position:
               111-598
               

               Cow position:
               chrX:32309710-32310196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 75
               

               Conread position:
               111-752
               

               Cow position:
               chrX:42247559-42246940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               649
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               345, 28
               

               Conread position:
               112-546
               

               Cow position:
               chrX:41198703-41199145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 72
               

               Conread position:
               112-673
               

               Cow position:
               chrX:7718469-7719017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 76
               

               Conread position:
               112-743
               

               Cow position:
               chrX:38218335-38218944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               643
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 72
               

               Conread position:
               115-598
               

               Cow position:
               chrX:34401618-34402091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 66
               

               Conread position:
               116-754
               

               Cow position:
               chrX:25035765-25035139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               651
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               259, 68
               

               Conread position:
               117-577
               

               Cow position:
               chrX:41743535-41743984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               339, 71
               

               Conread position:
               121-598
               

               Cow position:
               chrX:11718152-11717692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               335, 46
               

               Conread position:
               121-800
               

               Cow position:
               chrX:11844612-11843946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               693
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               302, 67
               

               Conread position:
               122-598
               

               Cow position:
               chrX:20697977-20697518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 67
               

               Conread position:
               122-725
               

               Cow position:
               chrX:47343919-47344513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               612
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 66
               

               Conread position:
               122-749
               

               Cow position:
               chrX:34502550-34503164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               253, 70
               

               Conread position:
               126-741
               

               Cow position:
               chrX:31250023-31250620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               452
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 66
               

               Conread position:
               128-759
               

               Cow position:
               chrX:5118850-5118252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 64
               

               Conread position:
               135-459
               

               Cow position:
               chrX:7381964-7382288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 57
               

               Conread position:
               135-600
               

               Cow position:
               chrX:630654-630216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               326
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               7, 46
               

               Conread position:
               138-598
               

               Cow position:
               chrX:47967243-47967698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 54
               

               Conread position:
               140-604
               

               Cow position:
               chrX:19689860-19690313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 52
               

               Conread position:
               141-598
               

               Cow position:
               chrX:28787017-28787441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               304
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               329, 32
               

               Conread position:
               144-719
               

               Cow position:
               chrX:46771323-46770754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 48
               

               Conread position:
               147-571
               

               Cow position:
               chrX:25232238-25232657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 34
               

               Conread position:
               148-598
               

               Cow position:
               chrX:32171229-32170798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 40
               

               Conread position:
               148-730
               

               Cow position:
               chrX:31436133-31436688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 44
               

               Conread position:
               148-767
               

               Cow position:
               chrX:42492877-42492266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               636
               

               Alignm identity:
               452
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 33
               

               Conread position:
               150-765
               

               Cow position:
               chrX:15545553-15546135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 5
               

               Conread position:
               151-506
               

               Cow position:
               chrX:41403617-41403979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 37
               

               Conread position:
               151-506
               

               Cow position:
               chrX:41410165-41410527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 37
               

               Conread position:
               151-641
               

               Cow position:
               chrX:47481456-47481938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 33
               

               Conread position:
               152-746
               

               Cow position:
               chrX:31443163-31442604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               358, 32
               

               Conread position:
               157-594
               

               Cow position:
               chrX:43527164-43527595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 36
               

               Conread position:
               157-745
               

               Cow position:
               chrX:40558014-40557424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 35
               

               Conread position:
               174-773
               

               Cow position:
               chrX:8925387-8925940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               282, 10
               

               Conread position:
               184-744
               

               Cow position:
               chrX:7350989-7351534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 21
               

               Conread position:
               202-534
               

               Cow position:
               chrX:19015144-19015464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               254, 63
               

               Conread position:
               202-550
               

               Cow position:
               chrX:14924702-14925043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               254, 60
               

               Conread position:
               202-552
               

               Cow position:
               chrX:28157187-28157543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 63
               

               Conread position:
               202-562
               

               Cow position:
               chrX:28845546-28845888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               254, 99
               

               Conread position:
               202-567
               

               Cow position:
               chrX:19188638-19188991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 63
               

               Conread position:
               202-599
               

               Cow position:
               chrX:7645960-7646343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               202-638
               

               Cow position:
               chrX:6234733-6234322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               254, 63
               

               Conread position:
               202-725
               

               Cow position:
               chrX:35273046-35273586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 63
               

               Conread position:
               202-762
               

               Cow position:
               chrX:41238661-41238112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 63
               

               Conread position:
               204-770
               

               Cow position:
               chrX:30133620-30133066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 71
               

               Conread position:
               207-773
               

               Cow position:
               chrX:4269360-4268814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 35
               

               Conread position:
               208-734
               

               Cow position:
               chrX:26492710-26493230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 65
               

               Conread position:
               209-567
               

               Cow position:
               chrX:35041931-35042278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 41
               

               Conread position:
               209-747
               

               Cow position:
               chrX:34454378-34454895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 51
               

               Conread position:
               209-763
               

               Cow position:
               chrX:1176265-1175741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               560
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 75
               

               Conread position:
               210-597
               

               Cow position:
               chrX:44835106-44834706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               275
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               175, 55
               

               Conread position:
               212-598
               

               Cow position:
               chrX:46723029-46722643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 53
               

               Conread position:
               214-598
               

               Cow position:
               chrX:48195327-48194944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 51
               

               Conread position:
               214-720
               

               Cow position:
               chrX:31294826-31294360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 56
               

               Conread position:
               214-741
               

               Cow position:
               chrX:46033004-46032499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 51
               

               Conread position:
               218-598
               

               Cow position:
               chrX:2467598-2467975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 47
               

               Conread position:
               218-741
               

               Cow position:
               chrX:16762490-16762998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 41
               

               Conread position:
               219-559
               

               Cow position:
               chrX:42874697-42875035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 44
               

               Conread position:
               219-598
               

               Cow position:
               chrX:33639684-33640066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 91
               

               Conread position:
               219-658
               

               Cow position:
               chrX:37836308-37836749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 33
               

               Conread position:
               220-550
               

               Cow position:
               chrX:9997611-9997293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               236, 26
               

               Conread position:
               220-550
               

               Cow position:
               chrX:40647698-40648029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 45
               

               Conread position:
               220-727
               

               Cow position:
               chrX:8730799-8731310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 45
               

               Conread position:
               223-567
               

               Cow position:
               chrX:12017998-12018352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 42
               

               Conread position:
               225-555
               

               Cow position:
               chrX:34270141-34270450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               225-555
               

               Cow position:
               chrX:47191670-47191359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               231
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               292, 36
               

               Conread position:
               230-594
               

               Cow position:
               chrX:17541694-17542047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 35
               

               Conread position:
               230-598
               

               Cow position:
               chrX:45404104-45403734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 35
               

               Conread position:
               238-598
               

               Cow position:
               chrX:17725716-17726066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 33
               

               Conread position:
               241-731
               

               Cow position:
               chrX:20151591-20152068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 24
               

               Conread position:
               241-736
               

               Cow position:
               chrX:27509279-27508799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 32
               

               Conread position:
               242-758
               

               Cow position:
               chrX:32020380-32019886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 23
               

               Conread position:
               245-598
               

               Cow position:
               chrX:48652986-48652630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 62
               

               Conread position:
               245-762
               

               Cow position:
               chrX:47588446-47588962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               341
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               114, 20
               

               Conread position:
               246-719
               

               Cow position:
               chrX:28878416-28877958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 19
               

               Conread position:
               246-745
               

               Cow position:
               chrX:24366083-24365588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 19
               

               Conread position:
               246-760
               

               Cow position:
               chrX:25816150-25815650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               260, 19
               

               Conread position:
               246-764
               

               Cow position:
               chrX:45598860-45598357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 53
               

               Conread position:
               248-644
               

               Cow position:
               chrX:23497915-23497535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 17
               

               Conread position:
               250-742
               

               Cow position:
               chrX:30921932-30922404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               329
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               14, 51
               

               Conread position:
               253-760
               

               Cow position:
               chrX:27432166-27431675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 12
               

               Conread position:
               256-766
               

               Cow position:
               chrX:20677121-20677617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               343
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               44, 9
               

               Conread position:
               258-598
               

               Cow position:
               chrX:24259822-24259488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               239
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               198, 40
               

               Conread position:
               258-746
               

               Cow position:
               chrX:40035693-40035207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 21
               

               Conread position:
               259-454
               

               Cow position:
               chrX:6639881-6640078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               162
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 40
               

               Conread position:
               259-567
               

               Cow position:
               chrX:27772199-27771906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               224
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               197, 41
               

               Conread position:
               259-598
               

               Cow position:
               chrX:27680158-27680489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 42
               

               Conread position:
               259-598
               

               Cow position:
               chrX:29761925-29761593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               104, 40
               

               Conread position:
               259-750
               

               Cow position:
               chrX:23514261-23513763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 40
               

               Conread position:
               260-576
               

               Cow position:
               chrX:26876123-26875812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               226
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               169, 42
               

               Conread position:
               260-740
               

               Cow position:
               chrX:38549206-38549676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 39
               

               Conread position:
               260-757
               

               Cow position:
               chrX:21672309-21672810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 42
               

               Conread position:
               261-597
               

               Cow position:
               chrX:13323241-13322897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               36, 129
               

               Conread position:
               261-598
               

               Cow position:
               chrX:17662838-17662507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 36
               

               Conread position:
               262-540
               

               Cow position:
               chrX:42339176-42338915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               211
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               194, 37
               

               Conread position:
               263-720
               

               Cow position:
               chrX:22821808-22822264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 43
               

               Conread position:
               264-726
               

               Cow position:
               chrX:4768512-4768943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               312
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               218, 35
               

               Conread position:
               265-513
               

               Cow position:
               chrX:35284380-35284625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 104
               

               Conread position:
               265-567
               

               Cow position:
               chrX:41167201-41166902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 37
               

               Conread position:
               265-743
               

               Cow position:
               chrX:6690485-6690010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 34
               

               Conread position:
               266-598
               

               Cow position:
               chrX:15814861-15815175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               266-753
               

               Cow position:
               chrX:27394250-27393777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 33
               

               Conread position:
               267-730
               

               Cow position:
               chrX:27514633-27515078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 32
               

               Conread position:
               268-485
               

               Cow position:
               chrX:25411606-25411821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               178
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               82, 31
               

               Conread position:
               268-767
               

               Cow position:
               chrX:48010360-48010859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 31
               

               Conread position:
               268-770
               

               Cow position:
               chrX:30963106-30962616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 31
               

               Conread position:
               270-752
               

               Cow position:
               chrX:44961515-44961995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 29
               

               Conread position:
               270-760
               

               Cow position:
               chrX:38935049-38935526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 29
               

               Conread position:
               273-577
               

               Cow position:
               chrX:14900950-14900663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               274-470
               

               Cow position:
               chrX:2206772-2206585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               182, 25
               

               Conread position:
               274-540
               

               Cow position:
               chrX:37048809-37048548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               201
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               103, 28
               

               Conread position:
               274-598
               

               Cow position:
               chrX:6278734-6278407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 25
               

               Conread position:
               274-600
               

               Cow position:
               chrX:6563284-6563613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               112, 28
               

               Conread position:
               274-600
               

               Cow position:
               chrX:21664951-21664627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               101, 28
               

               Conread position:
               274-721
               

               Cow position:
               chrX:35542663-35543094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 25
               

               Conread position:
               274-731
               

               Cow position:
               chrX:34543559-34544006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 25
               

               Conread position:
               274-752
               

               Cow position:
               chrX:36975721-36976189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 23
               

               Conread position:
               274-756
               

               Cow position:
               chrX:9201319-9201789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 25
               

               Conread position:
               274-759
               

               Cow position:
               chrX:42381328-42380862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 25
               

               Conread position:
               274-765
               

               Cow position:
               chrX:17231506-17231991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 25
               

               Conread position:
               274-791
               

               Cow position:
               chrX:38642032-38642524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               347
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               101, 25
               

               Conread position:
               275-490
               

               Cow position:
               chrX:48684450-48684239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               168
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               181, 24
               

               Conread position:
               275-598
               

               Cow position:
               chrX:11856202-11856521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 24
               

               Conread position:
               275-598
               

               Cow position:
               chrX:21004457-21004775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 26
               

               Conread position:
               275-654
               

               Cow position:
               chrX:619235-618853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 24
               

               Conread position:
               275-695
               

               Cow position:
               chrX:16416281-16416687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 24
               

               Conread position:
               276-598
               

               Cow position:
               chrX:5900231-5900553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               241
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               136, 23
               

               Conread position:
               276-599
               

               Cow position:
               chrX:47054754-47054433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               135, 23
               

               Conread position:
               276-735
               

               Cow position:
               chrX:44396789-44397235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 15
               

               Conread position:
               276-744
               

               Cow position:
               chrX:13382098-13382575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 23
               

               Conread position:
               277-550
               

               Cow position:
               chrX:29509669-29509395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 27
               

               Conread position:
               278-463
               

               Cow position:
               chrX:16324187-16324006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               178, 11
               

               Conread position:
               279-599
               

               Cow position:
               chrX:6265809-6265507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               231
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               177, 18
               

               Conread position:
               279-764
               

               Cow position:
               chrX:16541899-16541403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 20
               

               Conread position:
               280-498
               

               Cow position:
               chrX:19019334-19019112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               175
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               95, 19
               

               Conread position:
               280-747
               

               Cow position:
               chrX:12980053-12979599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 19
               

               Conread position:
               280-765
               

               Cow position:
               chrX:46073044-46072576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 19
               

               Conread position:
               281-598
               

               Cow position:
               chrX:23091660-23091962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 21
               

               Conread position:
               281-752
               

               Cow position:
               chrX:11633457-11633923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 16
               

               Conread position:
               281-774
               

               Cow position:
               chrX:3579715-3580209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 149
               

               Conread position:
               282-740
               

               Cow position:
               chrX:36283125-36283569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 19
               

               Conread position:
               282-741
               

               Cow position:
               chrX:29602053-29601598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 27
               

               Conread position:
               284-762
               

               Cow position:
               chrX:48236593-48237066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 14
               

               Conread position:
               285-451
               

               Cow position:
               chrX:25036918-25036750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               101, 14
               

               Conread position:
               286-745
               

               Cow position:
               chrX:40567383-40567839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 13
               

               Conread position:
               286-765
               

               Cow position:
               chrX:46587599-46588074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 206
               

               Conread position:
               287-454
               

               Cow position:
               chrX:10123562-10123395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               287-599
               

               Cow position:
               chrX:39126123-39126418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               172, 12
               

               Conread position:
               290-739
               

               Cow position:
               chrX:8869623-8869176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 136
               

               Conread position:
               290-750
               

               Cow position:
               chrX:47046733-47046263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               333
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               70, 9
               

               Conread position:
               291-754
               

               Cow position:
               chrX:38852984-38853453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 11
               

               Conread position:
               292-541
               

               Cow position:
               chrX:28836112-28835868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               164, 10
               

               Conread position:
               292-746
               

               Cow position:
               chrX:32329948-32330406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 37
               

               Conread position:
               292-747
               

               Cow position:
               chrX:27174785-27175236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 11
               

               Conread position:
               293-743
               

               Cow position:
               chrX:34411631-34412080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 10
               

               Conread position:
               294-644
               

               Cow position:
               chrX:9425952-9425595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 129
               

               Conread position:
               295-567
               

               Cow position:
               chrX:36961428-36961701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 11
               

               Conread position:
               295-744
               

               Cow position:
               chrX:29542428-29541996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 126
               

               Conread position:
               297-602
               

               Cow position:
               chrX:29120849-29121142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 68
               

               Conread position:
               299-539
               

               Cow position:
               chrX:26285774-26286013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 140
               

               Conread position:
               300-767
               

               Cow position:
               chrX:33000700-33001152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 12
               

               Conread position:
               302-541
               

               Cow position:
               chrX:17908486-17908254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               182
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               303-758
               

               Cow position:
               chrX:1499468-1499901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               305-489
               

               Cow position:
               chrX:4091448-4091632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               45, 53
               

               Conread position:
               305-541
               

               Cow position:
               chrX:30833045-30832818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               151, 81
               

               Conread position:
               305-597
               

               Cow position:
               chrX:47303079-47302787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               72, 140
               

               Conread position:
               306-598
               

               Cow position:
               chrX:47301102-47300812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               74, 137
               

               Conread position:
               306-601
               

               Cow position:
               chrX:43973360-43973641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               150, 64
               

               Conread position:
               306-741
               

               Cow position:
               chrX:29545078-29544657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 49
               

               Conread position:
               308-741
               

               Cow position:
               chrX:47484468-47484028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 186
               

               Conread position:
               309-598
               

               Cow position:
               chrX:40809491-40809784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               309-759
               

               Cow position:
               chrX:16996311-16996741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               303
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               114, 70
               

               Conread position:
               310-597
               

               Cow position:
               chrX:12405571-12405291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 35
               

               Conread position:
               311-486
               

               Cow position:
               chrX:18195748-18195916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               102, 54
               

               Conread position:
               312-589
               

               Cow position:
               chrX:10394288-10394022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               144, 37
               

               Conread position:
               312-747
               

               Cow position:
               chrX:45110463-45110887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               292
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               63, 94
               

               Conread position:
               313-673
               

               Cow position:
               chrX:43730406-43730049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 66
               

               Conread position:
               314-597
               

               Cow position:
               chrX:44657155-44656867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               61, 220
               

               Conread position:
               314-673
               

               Cow position:
               chrX:23785463-23785823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 173
               

               Conread position:
               314-769
               

               Cow position:
               chrX:31311835-31312313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 111
               

               Conread position:
               315-514
               

               Cow position:
               chrX:1505523-1505718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               141, 24
               

               Conread position:
               316-598
               

               Cow position:
               chrX:42235722-42235433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 111
               

               Conread position:
               317-566
               

               Cow position:
               chrX:41992228-41991986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               97, 20
               

               Conread position:
               317-599
               

               Cow position:
               chrX:45993031-45993322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               219
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               48, 91
               

               Conread position:
               322-598
               

               Cow position:
               chrX:47166067-47165795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               56, 24
               

               Conread position:
               322-747
               

               Cow position:
               chrX:32820847-32821276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 11
               

               Conread position:
               323-727
               

               Cow position:
               chrX:7336645-7337063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               264
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               23, 101
               

               Conread position:
               328-742
               

               Cow position:
               chrX:29680437-29680016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 29
               

               Conread position:
               328-742
               

               Cow position:
               chrX:47186497-47186095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               283
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               107, 94
               

               Conread position:
               328-749
               

               Cow position:
               chrX:36060975-36061397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 171
               

               Conread position:
               329-760
               

               Cow position:
               chrX:27145447-27145844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               292
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               5, 93
               

               Conread position:
               330-740
               

               Cow position:
               chrX:15231832-15231430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               264
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               75, 56
               

               Conread position:
               331-526
               

               Cow position:
               chrX:9770858-9770657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               46, 179
               

               Conread position:
               331-747
               

               Cow position:
               chrX:22387421-22387007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 96
               

               Conread position:
               331-765
               

               Cow position:
               chrX:35885903-35885479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 149
               

               Conread position:
               332-550
               

               Cow position:
               chrX:37750426-37750211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               43, 86
               

               Conread position:
               332-598
               

               Cow position:
               chrX:46433310-46433582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               203
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               43, 167
               

               Conread position:
               332-702
               

               Cow position:
               chrX:31252245-31252599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               257
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               24, 90
               

               Conread position:
               332-746
               

               Cow position:
               chrX:6407376-6407780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 52
               

               Conread position:
               333-747
               

               Cow position:
               chrX:34792482-34792087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               286
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               42, 61
               

               Conread position:
               333-767
               

               Cow position:
               chrX:37955666-37956098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               311
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               172, 32
               

               Conread position:
               334-740
               

               Cow position:
               chrX:25208017-25207632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               277
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               41, 148
               

               Conread position:
               334-763
               

               Cow position:
               chrX:22921143-22921573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 23
               

               Conread position:
               335-466
               

               Cow position:
               chrX:41271377-41271246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               121, 87
               

               Conread position:
               336-541
               

               Cow position:
               chrX:14003813-14003612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               39, 89
               

               Conread position:
               338-736
               

               Cow position:
               chrX:8917226-8917620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               265
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               37, 90
               

               Conread position:
               339-597
               

               Cow position:
               chrX:36515063-36514802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               37, 54
               

               Conread position:
               341-719
               

               Cow position:
               chrX:41068564-41068928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               115, 21
               

               Conread position:
               345-598
               

               Cow position:
               chrX:16532047-16532287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               80, 134
               

               Conread position:
               346-598
               

               Cow position:
               chrX:39415529-39415279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               11, 81
               

               Conread position:
               346-598
               

               Cow position:
               chrX:48571151-48570897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               31, 21
               

               Conread position:
               347-739
               

               Cow position:
               chrX:23561720-23562101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               109, 15
               

               Conread position:
               348-727
               

               Cow position:
               chrX:27227967-27228345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 149
               

               Conread position:
               349-752
               

               Cow position:
               chrX:43114996-43115391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               54, 73
               

               Conread position:
               354-747
               

               Cow position:
               chrX:21986442-21986065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               102, 67
               

               Conread position:
               356-736
               

               Cow position:
               chrX:20168410-20168780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 16
               

               Conread position:
               359-760
               

               Cow position:
               chrX:11085202-11084792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 65
               

               Conread position:
               360-603
               

               Cow position:
               chrX:42873249-42873478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               64, 6
               

               Conread position:
               360-740
               

               Cow position:
               chrX:47280076-47279707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               259
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               96, 61
               

               Conread position:
               360-747
               

               Cow position:
               chrX:34313889-34314256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               260
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               96, 39
               

               Conread position:
               360-776
               

               Cow position:
               chrX:29723597-29724015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               281
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               96, 62
               

               Conread position:
               361-597
               

               Cow position:
               chrX:48646743-48646516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               62, 97
               

               Conread position:
               361-744
               

               Cow position:
               chrX:11614556-11614908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               267
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               95, 61
               

               Conread position:
               361-747
               

               Cow position:
               chrX:43049916-43050306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               265
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               29, 134
               

               Conread position:
               366-542
               

               Cow position:
               chrX:27269832-27270002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               90, 56
               

               Conread position:
               366-550
               

               Cow position:
               chrX:31987005-31986822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               57, 129
               

               Conread position:
               367-598
               

               Cow position:
               chrX:7710680-7710448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               45, 127
               

               Conread position:
               367-765
               

               Cow position:
               chrX:45976783-45977178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               266
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               89, 237
               

               Conread position:
               368-598
               

               Cow position:
               chrX:22454228-22454007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               55, 29
               

               Conread position:
               368-599
               

               Cow position:
               chrX:21566266-21566499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               74, 55
               

               Conread position:
               369-598
               

               Cow position:
               chrX:18204598-18204372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               87, 122
               

               Conread position:
               369-741
               

               Cow position:
               chrX:41027022-41027390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 51
               

               Conread position:
               369-751
               

               Cow position:
               chrX:616397-615999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 52
               

               Conread position:
               372-767
               

               Cow position:
               chrX:34505179-34504798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               123, 49
               

               Conread position:
               373-686
               

               Cow position:
               chrX:9365806-9365477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               242
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               83, 48
               

               Conread position:
               373-744
               

               Cow position:
               chrX:40685462-40685096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               83, 49
               

               Conread position:
               373-747
               

               Cow position:
               chrX:42855321-42855699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 40
               

               Conread position:
               374-745
               

               Cow position:
               chrX:45875261-45875624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               242
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               82, 128
               

               Conread position:
               375-713
               

               Cow position:
               chrX:34222584-34222915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               238
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               43, 16
               

               Conread position:
               377-550
               

               Cow position:
               chrX:36723218-36723046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               79, 46
               

               Conread position:
               377-567
               

               Cow position:
               chrX:16055084-16055274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               79, 92
               

               Conread position:
               377-598
               

               Cow position:
               chrX:38728610-38728825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               79, 45
               

               Conread position:
               379-749
               

               Cow position:
               chrX:48262481-48262843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               44, 113
               

               Conread position:
               380-752
               

               Cow position:
               chrX:27946183-27945808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               43, 109
               

               Conread position:
               381-570
               

               Cow position:
               chrX:9155131-9155324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               381-577
               

               Cow position:
               chrX:20790798-20790983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               75, 42
               

               Conread position:
               382-767
               

               Cow position:
               chrX:40320283-40320662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 96
               

               Conread position:
               384-765
               

               Cow position:
               chrX:4403194-4403570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               268
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               163, 38
               

               Conread position:
               385-800
               

               Cow position:
               chrX:4512115-4512528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               275
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               71, 39
               

               Conread position:
               386-598
               

               Cow position:
               chrX:5679684-5679481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               70, 36
               

               Conread position:
               386-758
               

               Cow position:
               chrX:46546995-46546626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               21, 71
               

               Conread position:
               386-759
               

               Cow position:
               chrX:34315407-34315773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               69, 34
               

               Conread position:
               387-746
               

               Cow position:
               chrX:4296945-4296589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               20, 112
               

               Conread position:
               387-746
               

               Cow position:
               chrX:26881685-26881327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               251
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               69, 24
               

               Conread position:
               388-746
               

               Cow position:
               chrX:24331662-24332012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               68, 38
               

               Conread position:
               390-746
               

               Cow position:
               chrX:42927933-42927595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               234
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               66, 31
               

               Conread position:
               391-498
               

               Cow position:
               chrX:32747570-32747677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               89
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               65, 32
               

               Conread position:
               391-765
               

               Cow position:
               chrX:38654543-38654175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               256
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               65, 32
               

               Conread position:
               393-598
               

               Cow position:
               chrX:29194123-29194320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               393-716
               

               Cow position:
               chrX:4992127-4991819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               214
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               13, 67
               

               Conread position:
               393-758
               

               Cow position:
               chrX:17949601-17949245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 100
               

               Conread position:
               394-664
               

               Cow position:
               chrX:29549662-29549386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               23, 103
               

               Conread position:
               396-764
               

               Cow position:
               chrX:47657276-47657646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 28
               

               Conread position:
               397-570
               

               Cow position:
               chrX:35848454-35848627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               103, 25
               

               Conread position:
               402-767
               

               Cow position:
               chrX:16348672-16348297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               268
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               54, 154
               

               Conread position:
               403-751
               

               Cow position:
               chrX:21327802-21328155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 89
               

               Conread position:
               404-739
               

               Cow position:
               chrX:22115420-22115086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               24, 96
               

               Conread position:
               408-761
               

               Cow position:
               chrX:25283112-25282764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 86
               

               Conread position:
               412-722
               

               Cow position:
               chrX:23113184-23113503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               88, 44
               

               Conread position:
               414-767
               

               Cow position:
               chrX:12095865-12095516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               250
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               44, 76
               

               Conread position:
               415-596
               

               Cow position:
               chrX:1572228-1572050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               44, 79
               

               Conread position:
               415-737
               

               Cow position:
               chrX:10516165-10516480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 37
               

               Conread position:
               415-740
               

               Cow position:
               chrX:27261097-27261419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               236
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               32, 36
               

               Conread position:
               415-745
               

               Cow position:
               chrX:37129178-37129532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               52, 30
               

               Conread position:
               415-747
               

               Cow position:
               chrX:1466070-1466399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               41, 78
               

               Conread position:
               415-761
               

               Cow position:
               chrX:33654932-33654591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               251
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               41, 82
               

               Conread position:
               416-711
               

               Cow position:
               chrX:40283036-40283323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               40, 85
               

               Conread position:
               416-766
               

               Cow position:
               chrX:31515079-31515424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               237
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               40, 53
               

               Conread position:
               417-762
               

               Cow position:
               chrX:48071072-48071413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               233
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               39, 75
               

               Conread position:
               418-730
               

               Cow position:
               chrX:20882025-20881742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               219
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               38, 49
               

               Conread position:
               418-739
               

               Cow position:
               chrX:22283744-22284067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               38, 64
               

               Conread position:
               418-739
               

               Cow position:
               chrX:40680523-40680843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 76
               

               Conread position:
               422-745
               

               Cow position:
               chrX:23562551-23562900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               34, 51
               

               Conread position:
               426-735
               

               Cow position:
               chrX:39220000-39220312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 35
               

               Conread position:
               427-736
               

               Cow position:
               chrX:41271077-41270742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               226
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               427-747
               

               Cow position:
               chrX:36866092-36866409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               222
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               29, 197
               

               Conread position:
               432-727
               

               Cow position:
               chrX:38208617-38208338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               24, 56
               

               Conread position:
               434-716
               

               Cow position:
               chrX:19965474-19965190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               23, 192
               

               Conread position:
               435-655
               

               Cow position:
               chrX:22915107-22914890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               22, 34
               

               Conread position:
               437-756
               

               Cow position:
               chrX:19097291-19096949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               20, 57
               

               Conread position:
               445-736
               

               Cow position:
               chrX:15820536-15820830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               11, 49
               

               Conread position:
               445-747
               

               Cow position:
               chrX:25036926-25037228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               211
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               11, 49
               

               Conread position:
               445-758
               

               Cow position:
               chrX:27380292-27380607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               14, 49
               

               Conread position:
               448-727
               

               Cow position:
               chrX:1360028-1360298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               8, 44
               

               Conread position:
               448-770
               

               Cow position:
               chrX:4037230-4036895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               224
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               131, 6
               

               Conread position:
               449-742
               

               Cow position:
               chrX:40108573-40108283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               7, 35
               

               Conread position:
               455-766
               

               Cow position:
               chrX:11825690-11825388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               208
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               53, 32
               

               Conread position:
               456-746
               

               Cow position:
               chrX:22393035-22392753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               195
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               54, 34
               

               Conread position:
               460-738
               

               Cow position:
               chrX:4645957-4645687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               184, 37
               

               Conread position:
               465-748
               

               Cow position:
               chrX:17956655-17956925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               469-745
               

               Cow position:
               chrX:28940210-28940478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               25, 13
               

               Conread position:
               471-742
               

               Cow position:
               chrX:19394518-19394785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               192, 22
               

               Conread position:
               471-762
               

               Cow position:
               chrX:48473873-48474156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               124, 21
               

               Conread position:
               471-767
               

               Cow position:
               chrX:44834686-44834398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               129, 25
               

               Conread position:
               473-741
               

               Cow position:
               chrX:41941594-41941853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               127, 28
               

               Conread position:
               481-761
               

               Cow position:
               chrX:46793770-46793499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               198, 11
               

               Conread position:
               489-761
               

               Cow position:
               chrX:35275968-35276233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               145, 49
               

               Conread position:
               490-744
               

               Cow position:
               chrX:27075065-27074818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               490-765
               

               Cow position:
               chrX:42450032-42449760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               15, 110
               

               Conread position:
               490-767
               

               Cow position:
               chrX:6267651-6267928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               110, 62
               

               Conread position:
               493-746
               

               Cow position:
               chrX:3806670-3806912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               107, 15
               

               Conread position:
               494-765
               

               Cow position:
               chrX:26843281-26843012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               164, 14
               

               Conread position:
               497-773
               

               Cow position:
               chrX:4559729-4559994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               272, 45
               

               Conread position:
               501-746
               

               Cow position:
               chrX:38587849-38587610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               144, 102
               

               Conread position:
               504-742
               

               Cow position:
               chrX:32910101-32910328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               505-739
               

               Cow position:
               chrX:23335974-23335747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               95, 65
               

               Conread position:
               505-747
               

               Cow position:
               chrX:31829463-31829206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               505-763
               

               Cow position:
               chrX:30672397-30672128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               81, 8
               

               Conread position:
               505-767
               

               Cow position:
               chrX:26979791-26979536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               101, 88
               

               Conread position:
               506-767
               

               Cow position:
               chrX:27668958-27668706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               150, 10
               

               Conread position:
               507-752
               

               Cow position:
               chrX:43008609-43008851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               93, 140
               

               Conread position:
               508-765
               

               Cow position:
               chrX:24170728-24170471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               92, 135
               

               Conread position:
               510-759
               

               Cow position:
               chrX:38967891-38968141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               27, 77
               

               Conread position:
               510-763
               

               Cow position:
               chrX:25049279-25049029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               132, 91
               

               Conread position:
               512-744
               

               Cow position:
               chrX:1122538-1122314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               88, 52
               

               Conread position:
               513-744
               

               Cow position:
               chrX:38301815-38302047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               91, 113
               

               Conread position:
               513-748
               

               Cow position:
               chrX:35409755-35409989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               32, 128
               

               Conread position:
               530-741
               

               Cow position:
               chrX:35285196-35285404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               67, 102
               

               Conread position:
               530-749
               

               Cow position:
               chrX:28067873-28068089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               70, 117
               

               Conread position:
               531-742
               

               Cow position:
               chrX:37062561-37062336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               531-765
               

               Cow position:
               chrX:19717545-19717762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               534-745
               

               Cow position:
               chrX:1960398-1960191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               66, 113
               

               Conread position:
               537-735
               

               Cow position:
               chrX:4612852-4612650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               64, 127
               

               Conread position:
               537-743
               

               Cow position:
               chrX:40648926-40649133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               63, 29
               

               Conread position:
               537-747
               

               Cow position:
               chrX:2314589-2314382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               63, 85
               

               Conread position:
               537-763
               

               Cow position:
               chrX:46909845-46910060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               537-765
               

               Cow position:
               chrX:44995528-44995758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               50, 66
               

               Conread position:
               544-744
               

               Cow position:
               chrX:45843557-45843359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               56, 112
               

               Conread position:
               544-745
               

               Cow position:
               chrX:42875250-42875442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               544-763
               

               Cow position:
               chrX:17498359-17498575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               56, 82
               

               Conread position:
               549-738
               

               Cow position:
               chrX:35681609-35681795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               107, 53
               

               Conread position:
               550-758
               

               Cow position:
               chrX:8759670-8759871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               193, 12
               

               Conread position:
               554-764
               

               Cow position:
               chrX:43014626-43014410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               46, 192
               

               Conread position:
               555-741
               

               Cow position:
               chrX:1101605-1101780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               557-760
               

               Cow position:
               chrX:41363809-41363601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               43, 69
               

               Conread position:
               597-736
               

               Cow position:
               chrX:32976002-32975866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               597-743
               

               Cow position:
               chrX:42883337-42883475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               597-763
               

               Cow position:
               chrX:42164504-42164663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               597-771
               

               Cow position:
               chrX:27296410-27296235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               74, 43
               

               Conread position:
               599-740
               

               Cow position:
               chrX:27689200-27689340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               108
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               626-764
               

               Cow position:
               chrX:33865183-33865042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               106
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               630-765
               

               Cow position:
               chrX:42482672-42482536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               107
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               28, 109
               

               Conread position:
               631-747
               

               Cow position:
               chrX:11717603-11717488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               95
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               27, 44
               

               Conread position:
               631-756
               

               Cow position:
               chrX:15545532-15545406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               632-760
               

               Cow position:
               chrX:783567-783694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               98
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               637-764
               

               Cow position:
               chrX:11194906-11195037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               104
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               640-757
               

               Cow position:
               chrX:10479880-10479998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               97
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               104, 18
               

               Conread position:
               640-767
               

               Cow position:
               chrX:38640248-38640374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               97
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               641-754
               

               Cow position:
               chrX:11501024-11501139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               92
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               652-752
               

               Cow position:
               chrX:11670829-11670928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               101
               

               Alignm identity:
               85
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               655-764
               

               Cow position:
               chrX:38080292-38080400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               90
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               657-760
               

               Cow position:
               chrX:51756-51653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               104
               

               Alignm identity:
               85
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               657-795
               

               Cow position:
               chrX:10154902-10154767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               94, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-489
Cow position:	chrX:40452713-40452225 (view UCSC Genome Browser custom track)
Alignm length:	503
Alignm identity:	385
Alignm E-value:	0
Alignm gaps (pig, cow):	132, 8
Conread position:	1-521
Cow position:	chrX:35409180-35409674 (view UCSC Genome Browser custom track)
Alignm length:	525
Alignm identity:	397
Alignm E-value:	0
Alignm gaps (pig, cow):	455, 80
Conread position:	1-541
Cow position:	chrX:38438994-38439515 (view UCSC Genome Browser custom track)
Alignm length:	549
Alignm identity:	425
Alignm E-value:	0
Alignm gaps (pig, cow):	235, 51
Conread position:	1-547
Cow position:	chrX:12115547-12116087 (view UCSC Genome Browser custom track)
Alignm length:	556
Alignm identity:	414
Alignm E-value:	0
Alignm gaps (pig, cow):	292, 183
Conread position:	1-554
Cow position:	chrX:17497602-17498132 (view UCSC Genome Browser custom track)
Alignm length:	556
Alignm identity:	423
Alignm E-value:	0
Alignm gaps (pig, cow):	455, 180
Conread position:	1-558
Cow position:	chrX:35680851-35681393 (view UCSC Genome Browser custom track)
Alignm length:	569
Alignm identity:	431
Alignm E-value:	0
Alignm gaps (pig, cow):	267, 76
Conread position:	1-559
Cow position:	chrX:42462243-42461692 (view UCSC Genome Browser custom track)
Alignm length:	563
Alignm identity:	426
Alignm E-value:	0
Alignm gaps (pig, cow):	71, 181
Conread position:	1-563
Cow position:	chrX:9854779-9855354 (view UCSC Genome Browser custom track)
Alignm length:	588
Alignm identity:	411
Alignm E-value:	0
Alignm gaps (pig, cow):	133, 318
Conread position:	1-567
Cow position:	chrX:1331442-1331999 (view UCSC Genome Browser custom track)
Alignm length:	573
Alignm identity:	398
Alignm E-value:	0
Alignm gaps (pig, cow):	299, 78
Conread position:	1-590
Cow position:	chrX:45113140-45113702 (view UCSC Genome Browser custom track)
Alignm length:	596
Alignm identity:	431
Alignm E-value:	0
Alignm gaps (pig, cow):	74, 193
Conread position:	1-597
Cow position:	chrX:44874028-44873471 (view UCSC Genome Browser custom track)
Alignm length:	601
Alignm identity:	401
Alignm E-value:	0
Alignm gaps (pig, cow):	334, 165
Conread position:	1-598
Cow position:	chrX:7571409-7571996 (view UCSC Genome Browser custom track)
Alignm length:	602
Alignm identity:	435
Alignm E-value:	0
Alignm gaps (pig, cow):	160, 194
Conread position:	1-600
Cow position:	chrX:39558859-39558255 (view UCSC Genome Browser custom track)
Alignm length:	620
Alignm identity:	434
Alignm E-value:	0
Alignm gaps (pig, cow):	235, 23
Conread position:	1-601
Cow position:	chrX:20801279-20801863 (view UCSC Genome Browser custom track)
Alignm length:	611
Alignm identity:	419
Alignm E-value:	0
Alignm gaps (pig, cow):	138, 36
Conread position:	1-654
Cow position:	chrX:38227587-38226941 (view UCSC Genome Browser custom track)
Alignm length:	665
Alignm identity:	481
Alignm E-value:	0
Alignm gaps (pig, cow):	77, 186
Conread position:	1-701
Cow position:	chrX:28866478-28865814 (view UCSC Genome Browser custom track)
Alignm length:	706
Alignm identity:	495
Alignm E-value:	0
Alignm gaps (pig, cow):	235, 57
Conread position:	1-722
Cow position:	chrX:12309880-12309174 (view UCSC Genome Browser custom track)
Alignm length:	733
Alignm identity:	528
Alignm E-value:	0
Alignm gaps (pig, cow):	321, 125
Conread position:	1-734
Cow position:	chrX:31489017-31489744 (view UCSC Genome Browser custom track)
Alignm length:	749
Alignm identity:	550
Alignm E-value:	0
Alignm gaps (pig, cow):	62, 184
Conread position:	1-739
Cow position:	chrX:37489232-37489957 (view UCSC Genome Browser custom track)
Alignm length:	759
Alignm identity:	545
Alignm E-value:	0
Alignm gaps (pig, cow):	65, 101
Conread position:	1-741
Cow position:	chrX:9252665-9251933 (view UCSC Genome Browser custom track)
Alignm length:	758
Alignm identity:	530
Alignm E-value:	0
Alignm gaps (pig, cow):	374, 110