Cow genome map
| Conread name: | Utr1-UTR01D100086 |
| Conread position: | 3-494 |
| Cow position: | chr1:22529784-22529311 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 102 |
| Conread position: | 3-494 |
| Cow position: | chr1:53371376-53371869 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 104 |
| Conread position: | 3-516 |
| Cow position: | chr1:40510238-40509736 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 104 |
| Conread position: | 3-517 |
| Cow position: | chr1:30034648-30035137 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 43 |
| Conread position: | 3-521 |
| Cow position: | chr1:11854934-11854420 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 109 |
| Conread position: | 3-521 |
| Cow position: | chr1:71791940-71792459 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 48 |
| Conread position: | 3-522 |
| Cow position: | chr1:79633534-79633024 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 104 |
| Conread position: | 3-536 |
| Cow position: | chr1:29461346-29461875 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 244 |
| Conread position: | 3-536 |
| Cow position: | chr1:68846683-68846173 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 25 |
| Conread position: | 3-537 |
| Cow position: | chr1:44701765-44701237 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 110 |
| Conread position: | 3-537 |
| Cow position: | chr1:72812179-72812705 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 112 |
| Conread position: | 3-539 |
| Cow position: | chr1:45005986-45006507 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 58 |
| Conread position: | 4-536 |
| Cow position: | chr1:61220455-61220980 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 90 |
| Conread position: | 5-536 |
| Cow position: | chr1:26446180-26446696 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 102 |
| Conread position: | 6-455 |
| Cow position: | chr1:57970575-57970139 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 107 |
| Conread position: | 6-524 |
| Cow position: | chr1:53519687-53520195 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 63 |
| Conread position: | 8-490 |
| Cow position: | chr1:73403811-73404277 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 71 |
| Conread position: | 16-536 |
| Cow position: | chr1:85337907-85338400 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 88 |
| Conread position: | 24-537 |
| Cow position: | chr1:53649692-53650199 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 9 |
| Conread position: | 32-546 |
| Cow position: | chr1:24562705-24562203 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 84 |
| Conread position: | 37-533 |
| Cow position: | chr1:13718779-13718298 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 17 |
| Conread position: | 37-536 |
| Cow position: | chr1:58440241-58439750 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 59 |
| Conread position: | 39-536 |
| Cow position: | chr1:34684541-34685044 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 72 |
| Conread position: | 40-488 |
| Cow position: | chr1:2764169-2764610 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 195 |
| Conread position: | 96-533 |
| Cow position: | chr1:51444350-51444783 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 78 |
| Conread position: | 113-476 |
| Cow position: | chr1:49133046-49132691 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 284 |
| Conread position: | 172-454 |
| Cow position: | chr1:64595122-64594850 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 175-533 |
| Cow position: | chr1:70864451-70864788 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 9 |
| Conread position: | 178-536 |
| Cow position: | chr1:40532674-40532341 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 16 |
| Conread position: | 186-519 |
| Cow position: | chr1:86506138-86505827 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 186-539 |
| Cow position: | chr1:46694704-46694359 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 21 |
| Conread position: | 196-521 |
| Cow position: | chr1:19484029-19483716 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 61, 14 |
| Conread position: | 233-534 |
| Cow position: | chr1:4375535-4375256 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 106 |
| Conread position: | 235-536 |
| Cow position: | chr1:82879685-82879977 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 237-532 |
| Cow position: | chr1:5163088-5162801 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 15, 164 |
| Conread position: | 306-524 |
| Cow position: | chr1:24202824-24202614 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 12, 89 |
| Conread position: | 310-536 |
| Cow position: | chr1:31515786-31515574 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 205, 87 |
| Conread position: | 321-544 |
| Cow position: | chr1:71667142-71666913 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 9, 85 |
| Conread position: | 328-524 |
| Cow position: | chr1:52508275-52508091 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 173, 65 |
| Conread position: | 333-533 |
| Cow position: | chr1:66242710-66242519 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 390-534 |
| Cow position: | chr1:77461533-77461677 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 112, 16 |
Show alignments to all cow chromosomes.