Cow genome map
| Conread name: | Utr1-UTR01D100086 |
| Conread position: | 3-494 |
| Cow position: | chr3:6688709-6689207 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 107 |
| Conread position: | 3-494 |
| Cow position: | chr3:27245792-27245316 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 111 |
| Conread position: | 3-521 |
| Cow position: | chr3:61677434-61677940 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 104 |
| Conread position: | 3-530 |
| Cow position: | chr3:57742412-57742927 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 104 |
| Conread position: | 3-533 |
| Cow position: | chr3:77549870-77550388 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 76 |
| Conread position: | 3-536 |
| Cow position: | chr3:7477025-7476493 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 105 |
| Conread position: | 3-536 |
| Cow position: | chr3:18886361-18886884 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 61 |
| Conread position: | 3-536 |
| Cow position: | chr3:24455620-24455111 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 7 |
| Conread position: | 3-536 |
| Cow position: | chr3:25689551-25690072 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 104 |
| Conread position: | 3-536 |
| Cow position: | chr3:26566680-26567201 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 36 |
| Conread position: | 3-540 |
| Cow position: | chr3:21179363-21178826 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 104 |
| Conread position: | 3-540 |
| Cow position: | chr3:56102644-56103170 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 87 |
| Conread position: | 4-494 |
| Cow position: | chr3:45185086-45184610 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 103 |
| Conread position: | 5-536 |
| Cow position: | chr3:14466981-14466440 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 288 |
| Conread position: | 24-533 |
| Cow position: | chr3:53047876-53047377 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 52-488 |
| Cow position: | chr3:30908752-30909187 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 55 |
| Conread position: | 53-536 |
| Cow position: | chr3:36671675-36671191 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 54 |
| Conread position: | 57-521 |
| Cow position: | chr3:27454983-27454530 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 56 |
| Conread position: | 74-530 |
| Cow position: | chr3:3031218-3031646 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 33 |
| Conread position: | 89-536 |
| Cow position: | chr3:16114385-16114832 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 189 |
| Conread position: | 118-535 |
| Cow position: | chr3:62794067-62793664 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 185 |
| Conread position: | 137-535 |
| Cow position: | chr3:3885168-3884765 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 82 |
| Conread position: | 148-536 |
| Cow position: | chr3:26919770-26920145 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 161-536 |
| Cow position: | chr3:19795039-19794670 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 229 |
| Conread position: | 170-491 |
| Cow position: | chr3:13117991-13117687 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 89 |
| Conread position: | 174-536 |
| Cow position: | chr3:64024966-64024613 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 159 |
| Conread position: | 189-494 |
| Cow position: | chr3:34464450-34464741 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 189 |
| Conread position: | 189-520 |
| Cow position: | chr3:29582193-29582514 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 215-521 |
| Cow position: | chr3:70322564-70322267 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 229-536 |
| Cow position: | chr3:14279809-14280103 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 71 |
| Conread position: | 233-533 |
| Cow position: | chr3:22235372-22235084 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 50 |
| Conread position: | 233-536 |
| Cow position: | chr3:33254732-33254436 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 41 |
| Conread position: | 233-536 |
| Cow position: | chr3:58766270-58766567 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 24, 166 |
| Conread position: | 233-537 |
| Cow position: | chr3:35056108-35056405 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 234-521 |
| Cow position: | chr3:37599864-37600138 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 17, 41 |
| Conread position: | 236-521 |
| Cow position: | chr3:70336544-70336275 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 237-536 |
| Cow position: | chr3:34393156-34392858 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 162 |
| Conread position: | 242-535 |
| Cow position: | chr3:17460360-17460641 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 258-522 |
| Cow position: | chr3:72390071-72390326 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 58, 113 |
| Conread position: | 259-536 |
| Cow position: | chr3:22220296-22220566 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 265-521 |
| Cow position: | chr3:76136478-76136729 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 133 |
| Conread position: | 304-536 |
| Cow position: | chr3:16156722-16156943 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 94 |
| Conread position: | 317-537 |
| Cow position: | chr3:48528239-48528462 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 184, 21 |
| Conread position: | 322-533 |
| Cow position: | chr3:71245812-71246012 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 334-521 |
| Cow position: | chr3:60891491-60891669 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 339-526 |
| Cow position: | chr3:9639778-9639600 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 161, 29 |
| Conread position: | 408-537 |
| Cow position: | chr3:523502-523632 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 94, 31 |
Show alignments to all cow chromosomes.