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Cow genome map

           
Conread name:
           
Utr1-UTR01D100091
        

               
Conread position:
               
237-523
               

               
Cow position:
               
chr21:2293044-2292757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
106, 9
               

               
Conread position:
               
255-554
               

               
Cow position:
               
chr21:10004916-10004614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
255-555
               

               
Cow position:
               
chr21:21907458-21907170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 14
               

               
Conread position:
               
256-530
               

               
Cow position:
               
chr21:8950155-8950440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
63, 77
               

               
Conread position:
               
256-531
               

               
Cow position:
               
chr21:1511266-1511534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
170, 76
               

               
Conread position:
               
256-532
               

               
Cow position:
               
chr21:20152929-20153206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
64, 30
               

               
Conread position:
               
256-532
               

               
Cow position:
               
chr21:22850892-22851164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
256-565
               

               
Cow position:
               
chr21:23606649-23606955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
99, 30
               

               
Conread position:
               
257-563
               

               
Cow position:
               
chr21:12749270-12748957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
258-532
               

               
Cow position:
               
chr21:5970864-5970597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
258-556
               

               
Cow position:
               
chr21:43388325-43388634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
260-547
               

               
Cow position:
               
chr21:23568192-23568488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
28, 215
               

               
Conread position:
               
261-554
               

               
Cow position:
               
chr21:11779557-11779267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
261-556
               

               
Cow position:
               
chr21:13656657-13656355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
171, 41
               

               
Conread position:
               
261-565
               

               
Cow position:
               
chr21:47764143-47763831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
261-566
               

               
Cow position:
               
chr21:18059984-18059673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
81, 53
               

               
Conread position:
               
262-480
               

               
Cow position:
               
chr21:26244893-26245114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
164, 70
               

               
Conread position:
               
262-543
               

               
Cow position:
               
chr21:30231718-30231436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
262-544
               

               
Cow position:
               
chr21:977172-976878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 283
               

               
Conread position:
               
262-555
               

               
Cow position:
               
chr21:46849154-46848861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 119
               

               
Conread position:
               
262-556
               

               
Cow position:
               
chr21:10657129-10656829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 171
               

               
Conread position:
               
262-556
               

               
Cow position:
               
chr21:15544245-15543966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
263-532
               

               
Cow position:
               
chr21:22121492-22121751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
205, 62
               

               
Conread position:
               
263-532
               

               
Cow position:
               
chr21:37838087-37837829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 22
               

               
Conread position:
               
264-557
               

               
Cow position:
               
chr21:33982831-33982540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
46, 123
               

               
Conread position:
               
265-558
               

               
Cow position:
               
chr21:47714029-47713727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
36, 76
               

               
Conread position:
               
268-556
               

               
Cow position:
               
chr21:44074680-44074965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
6, 26
               

               
Conread position:
               
279-532
               

               
Cow position:
               
chr21:24266566-24266312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
152, 35
               

               
Conread position:
               
286-532
               

               
Cow position:
               
chr21:42328661-42328412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
142, 28
               

               
Conread position:
               
289-556
               

               
Cow position:
               
chr21:31760207-31759947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
295-552
               

               
Cow position:
               
chr21:36763075-36763331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 28
               

               
Conread position:
               
296-566
               

               
Cow position:
               
chr21:47760781-47761053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
301-570
               

               
Cow position:
               
chr21:47719280-47719010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
230, 22
               

               
Conread position:
               
302-532
               

               
Cow position:
               
chr21:11644947-11644717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
124, 32
               

               
Conread position:
               
302-532
               

               
Cow position:
               
chr21:17982999-17983220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
158, 30
               

               
Conread position:
               
302-547
               

               
Cow position:
               
chr21:30592284-30592051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
124, 21
               

               
Conread position:
               
302-554
               

               
Cow position:
               
chr21:19407559-19407301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
302-569
               

               
Cow position:
               
chr21:16604297-16604033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
303-555
               

               
Cow position:
               
chr21:30222366-30222619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
123, 11
               

               
Conread position:
               
303-561
               

               
Cow position:
               
chr21:10007618-10007361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
304-535
               

               
Cow position:
               
chr21:41155884-41156123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
305-532
               

               
Cow position:
               
chr21:22718762-22718534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
305-548
               

               
Cow position:
               
chr21:36910761-36911002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
305-554
               

               
Cow position:
               
chr21:19196139-19195892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
123, 11
               

               
Conread position:
               
305-556
               

               
Cow position:
               
chr21:12461946-12461696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
10, 28
               

               
Conread position:
               
305-563
               

               
Cow position:
               
chr21:44251822-44251562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
305-565
               

               
Cow position:
               
chr21:10130164-10130427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
305-565
               

               
Cow position:
               
chr21:44114108-44113856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
306-509
               

               
Cow position:
               
chr21:9416272-9416476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
306-528
               

               
Cow position:
               
chr21:41198377-41198152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr21:3585344-3585115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
120, 17
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr21:16793812-16794043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr21:28244493-28244716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr21:41287771-41287547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
306-535
               

               
Cow position:
               
chr21:18568616-18568385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 17
               

               
Conread position:
               
306-543
               

               
Cow position:
               
chr21:12739103-12739348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
154, 26
               

               
Conread position:
               
306-547
               

               
Cow position:
               
chr21:10148015-10148263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
61, 17
               

               
Conread position:
               
306-550
               

               
Cow position:
               
chr21:23586904-23587139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
122, 132
               

               
Conread position:
               
306-551
               

               
Cow position:
               
chr21:14464603-14464854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
91, 26
               

               
Conread position:
               
306-555
               

               
Cow position:
               
chr21:36696067-36695813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
124, 26
               

               
Conread position:
               
306-556
               

               
Cow position:
               
chr21:6834073-6834323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
123, 8
               

               
Conread position:
               
306-557
               

               
Cow position:
               
chr21:23980158-23979898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
122, 11
               

               
Conread position:
               
306-559
               

               
Cow position:
               
chr21:41621147-41621409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
306-563
               

               
Cow position:
               
chr21:957696-957948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
131, 29
               

               
Conread position:
               
306-565
               

               
Cow position:
               
chr21:18155545-18155284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
306-584
               

               
Cow position:
               
chr21:19561546-19561262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
307-460
               

               
Cow position:
               
chr21:10001099-10001253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
119, 25
               

               
Conread position:
               
307-527
               

               
Cow position:
               
chr21:2550244-2550470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
307-530
               

               
Cow position:
               
chr21:14760596-14760804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 46
               

               
Conread position:
               
307-532
               

               
Cow position:
               
chr21:3763718-3763502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
121, 25
               

               
Conread position:
               
307-532
               

               
Cow position:
               
chr21:10264056-10264284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
307-532
               

               
Cow position:
               
chr21:17193728-17193499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 22
               

               
Conread position:
               
307-532
               

               
Cow position:
               
chr21:34049856-34049640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
119, 8
               

               
Conread position:
               
307-551
               

               
Cow position:
               
chr21:31159427-31159654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
121, 7
               

               
Conread position:
               
307-552
               

               
Cow position:
               
chr21:4281849-4281614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
307-555
               

               
Cow position:
               
chr21:16914798-16915058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
49, 9
               

               
Conread position:
               
307-556
               

               
Cow position:
               
chr21:8545994-8545747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
307-556
               

               
Cow position:
               
chr21:31279282-31279526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
119, 15
               

               
Conread position:
               
307-556
               

               
Cow position:
               
chr21:38918225-38918480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
12, 36
               

               
Conread position:
               
307-557
               

               
Cow position:
               
chr21:20160702-20160952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 9
               

               
Conread position:
               
307-563
               

               
Cow position:
               
chr21:42144851-42145099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
119, 16
               

               
Conread position:
               
307-566
               

               
Cow position:
               
chr21:27521308-27521058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
119, 25
               

               
Conread position:
               
307-576
               

               
Cow position:
               
chr21:26563136-26562868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
110, 25
               

               
Conread position:
               
307-576
               

               
Cow position:
               
chr21:27863492-27863224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
19, 141
               

               
Conread position:
               
308-522
               

               
Cow position:
               
chr21:7377901-7377684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
308-523
               

               
Cow position:
               
chr21:1483505-1483714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
308-542
               

               
Cow position:
               
chr21:17890327-17890562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 20
               

               
Conread position:
               
308-551
               

               
Cow position:
               
chr21:5426965-5427195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
308-552
               

               
Cow position:
               
chr21:6713502-6713255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
23, 160
               

               
Conread position:
               
308-556
               

               
Cow position:
               
chr21:38720276-38720522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
308-564
               

               
Cow position:
               
chr21:41140691-41140429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
118, 15
               

               
Conread position:
               
308-570
               

               
Cow position:
               
chr21:40266150-40266411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
310-552
               

               
Cow position:
               
chr21:8924389-8924640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 200
               

               
Conread position:
               
313-557
               

               
Cow position:
               
chr21:745207-745449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
110, 21
               

               
Conread position:
               
314-532
               

               
Cow position:
               
chr21:44829730-44829507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
314-567
               

               
Cow position:
               
chr21:36765791-36765533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
315-535
               

               
Cow position:
               
chr21:7066349-7066133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
315-551
               

               
Cow position:
               
chr21:868892-868651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 17
               

               
Conread position:
               
315-562
               

               
Cow position:
               
chr21:47465085-47464840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
107, 8
               

               
Conread position:
               
316-499
               

               
Cow position:
               
chr21:9990544-9990727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
110, 18
               

               
Conread position:
               
316-523
               

               
Cow position:
               
chr21:18471611-18471814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
316-531
               

               
Cow position:
               
chr21:25344894-25345112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
316-543
               

               
Cow position:
               
chr21:37640586-37640831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
316-549
               

               
Cow position:
               
chr21:37789968-37789736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 150
               

               
Conread position:
               
316-554
               

               
Cow position:
               
chr21:16152473-16152710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
316-556
               

               
Cow position:
               
chr21:13580444-13580688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
25, 136
               

               
Conread position:
               
316-581
               

               
Cow position:
               
chr21:11740086-11739816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
317-475
               

               
Cow position:
               
chr21:41597846-41598006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
109, 9
               

               
Conread position:
               
317-478
               

               
Cow position:
               
chr21:10538221-10538059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
317-479
               

               
Cow position:
               
chr21:30119728-30119893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
317-516
               

               
Cow position:
               
chr21:23573371-23573570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
317-521
               

               
Cow position:
               
chr21:6624192-6624397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
119, 9
               

               
Conread position:
               
317-531
               

               
Cow position:
               
chr21:39319380-39319162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
15, 205
               

               
Conread position:
               
317-532
               

               
Cow position:
               
chr21:10114297-10114084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
111, 61
               

               
Conread position:
               
317-532
               

               
Cow position:
               
chr21:13842523-13842742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
317-532
               

               
Cow position:
               
chr21:16083083-16082863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
317-532
               

               
Cow position:
               
chr21:24797691-24797904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
317-532
               

               
Cow position:
               
chr21:28027831-28028048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
317-547
               

               
Cow position:
               
chr21:48527443-48527680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
111, 18
               

               
Conread position:
               
317-549
               

               
Cow position:
               
chr21:38728188-38728422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
317-550
               

               
Cow position:
               
chr21:41918208-41917972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
317-554
               

               
Cow position:
               
chr21:19702765-19703001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
317-555
               

               
Cow position:
               
chr21:12154164-12154397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
317-555
               

               
Cow position:
               
chr21:28919489-28919260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
317-556
               

               
Cow position:
               
chr21:37706381-37706138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
317-556
               

               
Cow position:
               
chr21:39664364-39664125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
317-556
               

               
Cow position:
               
chr21:42501078-42501325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
317-557
               

               
Cow position:
               
chr21:41610201-41610458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
114, 15
               

               
Conread position:
               
317-560
               

               
Cow position:
               
chr21:13840361-13840604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
317-562
               

               
Cow position:
               
chr21:36023156-36022910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
317-564
               

               
Cow position:
               
chr21:45151595-45151345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
317-565
               

               
Cow position:
               
chr21:11755731-11755483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
317-565
               

               
Cow position:
               
chr21:22856255-22856504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
317-570
               

               
Cow position:
               
chr21:47074-47342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
317-576
               

               
Cow position:
               
chr21:13048159-13047897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
317-576
               

               
Cow position:
               
chr21:17637926-17638185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
317-585
               

               
Cow position:
               
chr21:10858842-10859111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
318-523
               

               
Cow position:
               
chr21:11174274-11174484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
318-532
               

               
Cow position:
               
chr21:13588799-13589011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
107, 14
               

               
Conread position:
               
318-532
               

               
Cow position:
               
chr21:14452269-14452482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
110, 14
               

               
Conread position:
               
318-562
               

               
Cow position:
               
chr21:15545337-15545082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
19, 109
               

               
Conread position:
               
318-566
               

               
Cow position:
               
chr21:9278558-9278811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
42, 14
               

               
Conread position:
               
318-589
               

               
Cow position:
               
chr21:35084562-35084291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
319-480
               

               
Cow position:
               
chr21:13163895-13164059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
112, 13
               

               
Conread position:
               
319-510
               

               
Cow position:
               
chr21:36795639-36795830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
319-532
               

               
Cow position:
               
chr21:71623-71835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
108, 13
               

               
Conread position:
               
319-562
               

               
Cow position:
               
chr21:641623-641860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
107, 9
               

               
Conread position:
               
320-532
               

               
Cow position:
               
chr21:1562506-1562281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
320-547
               

               
Cow position:
               
chr21:2537103-2536872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
320-560
               

               
Cow position:
               
chr21:3415689-3415941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
320-562
               

               
Cow position:
               
chr21:28792443-28792690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
321-475
               

               
Cow position:
               
chr21:2657847-2658002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
105, 7
               

               
Conread position:
               
321-499
               

               
Cow position:
               
chr21:45329909-45329738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
105, 37
               

               
Conread position:
               
321-587
               

               
Cow position:
               
chr21:4674500-4674770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 94
               

               
Conread position:
               
322-480
               

               
Cow position:
               
chr21:17265962-17265802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
92, 12
               

               
Conread position:
               
322-480
               

               
Cow position:
               
chr21:24642560-24642710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
322-509
               

               
Cow position:
               
chr21:7768477-7768661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
104, 12
               

               
Conread position:
               
322-509
               

               
Cow position:
               
chr21:19258861-19259042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
104, 10
               

               
Conread position:
               
322-523
               

               
Cow position:
               
chr21:28191395-28191589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
140, 10
               

               
Conread position:
               
322-525
               

               
Cow position:
               
chr21:11353101-11353305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
322-531
               

               
Cow position:
               
chr21:10410264-10410471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
104, 10
               

               
Conread position:
               
322-532
               

               
Cow position:
               
chr21:23535750-23535962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
322-532
               

               
Cow position:
               
chr21:44724329-44724127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
322-542
               

               
Cow position:
               
chr21:28030328-28030538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
100, 6
               

               
Conread position:
               
322-548
               

               
Cow position:
               
chr21:47363697-47363459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
322-552
               

               
Cow position:
               
chr21:38449406-38449183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
104, 10
               

               
Conread position:
               
322-553
               

               
Cow position:
               
chr21:19958253-19958485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
105, 10
               

               
Conread position:
               
322-554
               

               
Cow position:
               
chr21:6997979-6998213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
30, 10
               

               
Conread position:
               
322-555
               

               
Cow position:
               
chr21:7394423-7394642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
218, 10
               

               
Conread position:
               
322-555
               

               
Cow position:
               
chr21:17183961-17184190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
107, 10
               

               
Conread position:
               
322-555
               

               
Cow position:
               
chr21:17455425-17455653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
322-556
               

               
Cow position:
               
chr21:8713920-8713677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
322-565
               

               
Cow position:
               
chr21:20165681-20165920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
106, 18
               

               
Conread position:
               
322-565
               

               
Cow position:
               
chr21:36682364-36682608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
104, 10
               

               
Conread position:
               
322-567
               

               
Cow position:
               
chr21:27677521-27677772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 13
               

               
Conread position:
               
323-530
               

               
Cow position:
               
chr21:18493332-18493119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
323-530
               

               
Cow position:
               
chr21:46809731-46809517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
323-532
               

               
Cow position:
               
chr21:12310516-12310722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
139, 99
               

               
Conread position:
               
323-532
               

               
Cow position:
               
chr21:13462754-13462967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 5
               

               
Conread position:
               
323-532
               

               
Cow position:
               
chr21:13889606-13889405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
132, 9
               

               
Conread position:
               
323-532
               

               
Cow position:
               
chr21:17559889-17559667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
323-551
               

               
Cow position:
               
chr21:30835406-30835634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
323-555
               

               
Cow position:
               
chr21:33759-34006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
105, 9
               

               
Conread position:
               
323-555
               

               
Cow position:
               
chr21:14597377-14597148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 12
               

               
Conread position:
               
323-555
               

               
Cow position:
               
chr21:36508278-36508502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
104, 9
               

               
Conread position:
               
323-556
               

               
Cow position:
               
chr21:9477204-9477437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
105, 9
               

               
Conread position:
               
323-556
               

               
Cow position:
               
chr21:38900814-38901036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
323-562
               

               
Cow position:
               
chr21:22005869-22005616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
323-564
               

               
Cow position:
               
chr21:7710204-7710445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
102, 12
               

               
Conread position:
               
323-566
               

               
Cow position:
               
chr21:21900559-21900308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
323-576
               

               
Cow position:
               
chr21:10743425-10743681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
324-474
               

               
Cow position:
               
chr21:8213238-8213089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 59
               

               
Conread position:
               
324-476
               

               
Cow position:
               
chr21:25628870-25628715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
136, 152
               

               
Conread position:
               
324-532
               

               
Cow position:
               
chr21:20213736-20213522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
102, 8
               

               
Conread position:
               
324-555
               

               
Cow position:
               
chr21:45971132-45970908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
104, 38
               

               
Conread position:
               
324-558
               

               
Cow position:
               
chr21:6051543-6051780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
326-512
               

               
Cow position:
               
chr21:6736146-6735964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
100, 8
               

               
Conread position:
               
327-543
               

               
Cow position:
               
chr21:30848897-30848688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
99, 19
               

               
Conread position:
               
327-562
               

               
Cow position:
               
chr21:30938630-30938388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
16, 161
               

               
Conread position:
               
328-519
               

               
Cow position:
               
chr21:49276177-49276373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
328-530
               

               
Cow position:
               
chr21:19161756-19161962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
328-556
               

               
Cow position:
               
chr21:30969982-30970208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
103, 18
               

               
Conread position:
               
329-480
               

               
Cow position:
               
chr21:471721-471872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 80
               

               
Conread position:
               
329-532
               

               
Cow position:
               
chr21:700748-700540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
329-532
               

               
Cow position:
               
chr21:3360968-3360767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
329-532
               

               
Cow position:
               
chr21:10561538-10561336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
97, 122
               

               
Conread position:
               
329-532
               

               
Cow position:
               
chr21:29658321-29658523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
99, 80
               

               
Conread position:
               
329-548
               

               
Cow position:
               
chr21:40291701-40291484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
97, 47
               

               
Conread position:
               
329-555
               

               
Cow position:
               
chr21:17419037-17418811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
120, 58
               

               
Conread position:
               
329-555
               

               
Cow position:
               
chr21:40475544-40475772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 32
               

               
Conread position:
               
329-556
               

               
Cow position:
               
chr21:938066-938299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
97, 31
               

               
Conread position:
               
329-557
               

               
Cow position:
               
chr21:32393012-32392788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
125, 73
               

               
Conread position:
               
329-558
               

               
Cow position:
               
chr21:25014981-25014765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
330-530
               

               
Cow position:
               
chr21:19766900-19767112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
330-531
               

               
Cow position:
               
chr21:9311092-9311303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
330-532
               

               
Cow position:
               
chr21:37835624-37835835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 75
               

               
Conread position:
               
330-541
               

               
Cow position:
               
chr21:17875147-17874927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
330-547
               

               
Cow position:
               
chr21:17511822-17512038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
69, 173
               

               
Conread position:
               
330-553
               

               
Cow position:
               
chr21:14027108-14027342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
330-555
               

               
Cow position:
               
chr21:10978902-10978674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
92, 64
               

               
Conread position:
               
330-556
               

               
Cow position:
               
chr21:31652434-31652660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
98, 37
               

               
Conread position:
               
330-559
               

               
Cow position:
               
chr21:31246310-31246549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
37, 102
               

               
Conread position:
               
331-474
               

               
Cow position:
               
chr21:30980530-30980386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 63
               

               
Conread position:
               
331-480
               

               
Cow position:
               
chr21:43259266-43259415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
101, 134
               

               
Conread position:
               
331-531
               

               
Cow position:
               
chr21:24858362-24858564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
331-532
               

               
Cow position:
               
chr21:12916375-12916169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
10, 98
               

               
Conread position:
               
331-532
               

               
Cow position:
               
chr21:13225762-13225966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
95, 165
               

               
Conread position:
               
331-532
               

               
Cow position:
               
chr21:28237659-28237450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
97, 36
               

               
Conread position:
               
331-541
               

               
Cow position:
               
chr21:10009776-10009553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
331-556
               

               
Cow position:
               
chr21:17403803-17403573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
331-559
               

               
Cow position:
               
chr21:32339693-32339471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 134
               

               
Conread position:
               
332-523
               

               
Cow position:
               
chr21:9819478-9819287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 131
               

               
Conread position:
               
332-523
               

               
Cow position:
               
chr21:17515855-17516050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
13, 68
               

               
Conread position:
               
332-523
               

               
Cow position:
               
chr21:18721057-18720865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
102, 26
               

               
Conread position:
               
332-523
               

               
Cow position:
               
chr21:46912593-46912789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
332-532
               

               
Cow position:
               
chr21:17519068-17519277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
332-532
               

               
Cow position:
               
chr21:28907496-28907300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
82, 51
               

               
Conread position:
               
332-555
               

               
Cow position:
               
chr21:46776953-46776726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 207
               

               
Conread position:
               
332-556
               

               
Cow position:
               
chr21:13303840-13304074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
332-564
               

               
Cow position:
               
chr21:9504913-9505151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
332-565
               

               
Cow position:
               
chr21:18318760-18319001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
100, 64
               

               
Conread position:
               
333-555
               

               
Cow position:
               
chr21:19060042-19059820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
333-559
               

               
Cow position:
               
chr21:6017673-6017906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 97
               

               
Conread position:
               
333-566
               

               
Cow position:
               
chr21:49699991-49699755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
95, 204
               

               
Conread position:
               
334-523
               

               
Cow position:
               
chr21:14360415-14360608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
334-556
               

               
Cow position:
               
chr21:82117-82337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
92, 129
               

               
Conread position:
               
334-570
               

               
Cow position:
               
chr21:41043269-41043031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
92, 203
               

               
Conread position:
               
335-523
               

               
Cow position:
               
chr21:19624451-19624644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 59
               

               
Conread position:
               
335-525
               

               
Cow position:
               
chr21:829157-828968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
96, 110
               

               
Conread position:
               
335-525
               

               
Cow position:
               
chr21:11625794-11625988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
335-550
               

               
Cow position:
               
chr21:41590514-41590299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
91, 130
               

               
Conread position:
               
335-554
               

               
Cow position:
               
chr21:27712192-27711962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
335-554
               

               
Cow position:
               
chr21:37928700-37928921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
87, 183
               

               
Conread position:
               
335-555
               

               
Cow position:
               
chr21:26018430-26018653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
93, 81
               

               
Conread position:
               
336-532
               

               
Cow position:
               
chr21:4399855-4400042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
90, 128
               

               
Conread position:
               
336-547
               

               
Cow position:
               
chr21:9301275-9301489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
336-559
               

               
Cow position:
               
chr21:40571404-40571195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
96, 54
               

               
Conread position:
               
336-611
               

               
Cow position:
               
chr21:6153853-6154134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
90, 38
               

               
Conread position:
               
337-532
               

               
Cow position:
               
chr21:14126334-14126521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
89, 22
               

               
Conread position:
               
339-541
               

               
Cow position:
               
chr21:18341272-18341482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
339-550
               

               
Cow position:
               
chr21:1735323-1735118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 128
               

               
Conread position:
               
340-477
               

               
Cow position:
               
chr21:23322022-23321883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
340-523
               

               
Cow position:
               
chr21:8497550-8497363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
340-532
               

               
Cow position:
               
chr21:24296712-24296516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
340-532
               

               
Cow position:
               
chr21:24875408-24875601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
41, 125
               

               
Conread position:
               
340-532
               

               
Cow position:
               
chr21:29069271-29069074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
340-541
               

               
Cow position:
               
chr21:20318569-20318781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
88, 43
               

               
Conread position:
               
340-547
               

               
Cow position:
               
chr21:31659091-31658890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
88, 44
               

               
Conread position:
               
340-548
               

               
Cow position:
               
chr21:19148166-19148384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
122, 91
               

               
Conread position:
               
340-554
               

               
Cow position:
               
chr21:22194043-22193824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
66, 200
               

               
Conread position:
               
340-556
               

               
Cow position:
               
chr21:13674596-13674377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
88, 180
               

               
Conread position:
               
340-559
               

               
Cow position:
               
chr21:26033883-26034105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
88, 207
               

               
Conread position:
               
340-563
               

               
Cow position:
               
chr21:17842941-17842716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
88, 206
               

               
Conread position:
               
340-565
               

               
Cow position:
               
chr21:13817448-13817677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
115, 209
               

               
Conread position:
               
340-565
               

               
Cow position:
               
chr21:24343211-24342985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
93, 206
               

               
Conread position:
               
340-574
               

               
Cow position:
               
chr21:12541343-12541109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
340-576
               

               
Cow position:
               
chr21:25127660-25127902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
341-532
               

               
Cow position:
               
chr21:26735466-26735646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
97, 37
               

               
Conread position:
               
341-551
               

               
Cow position:
               
chr21:16498576-16498783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 40
               

               
Conread position:
               
341-554
               

               
Cow position:
               
chr21:13090431-13090648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
341-556
               

               
Cow position:
               
chr21:16895471-16895685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
193, 84
               

               
Conread position:
               
341-562
               

               
Cow position:
               
chr21:26391981-26392204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
87, 206
               

               
Conread position:
               
341-576
               

               
Cow position:
               
chr21:8431043-8430806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
87, 202
               

               
Conread position:
               
341-580
               

               
Cow position:
               
chr21:30145571-30145338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
121, 80
               

               
Conread position:
               
342-542
               

               
Cow position:
               
chr21:42135558-42135360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 123
               

               
Conread position:
               
342-574
               

               
Cow position:
               
chr21:14717991-14717753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
24, 207
               

               
Conread position:
               
342-574
               

               
Cow position:
               
chr21:16190716-16190478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
24, 207
               

               
Conread position:
               
342-578
               

               
Cow position:
               
chr21:17531187-17531431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
342-591
               

               
Cow position:
               
chr21:34738635-34738879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
36, 124
               

               
Conread position:
               
343-532
               

               
Cow position:
               
chr21:48482469-48482281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
343-550
               

               
Cow position:
               
chr21:10576295-10576503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
85, 17
               

               
Conread position:
               
343-557
               

               
Cow position:
               
chr21:40059087-40059300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
23, 120
               

               
Conread position:
               
344-460
               

               
Cow position:
               
chr21:8687083-8686965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
344-532
               

               
Cow position:
               
chr21:6584078-6583891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
117, 74
               

               
Conread position:
               
344-565
               

               
Cow position:
               
chr21:20174378-20174599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
82, 113
               

               
Conread position:
               
345-518
               

               
Cow position:
               
chr21:31038206-31038023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
345-523
               

               
Cow position:
               
chr21:8959552-8959733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
345-523
               

               
Cow position:
               
chr21:13985647-13985829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
345-532
               

               
Cow position:
               
chr21:19220736-19220546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
346-532
               

               
Cow position:
               
chr21:42355691-42355890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
346-564
               

               
Cow position:
               
chr21:30657932-30658142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 118
               

               
Conread position:
               
347-532
               

               
Cow position:
               
chr21:14745833-14746021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
74, 7
               

               
Conread position:
               
348-532
               

               
Cow position:
               
chr21:16508656-16508478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 75
               

               
Conread position:
               
348-606
               

               
Cow position:
               
chr21:29418636-29418894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
78, 30
               

               
Conread position:
               
349-550
               

               
Cow position:
               
chr21:12348830-12349035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
349-553
               

               
Cow position:
               
chr21:27409667-27409468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
83, 119
               

               
Conread position:
               
349-555
               

               
Cow position:
               
chr21:33169663-33169875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
349-556
               

               
Cow position:
               
chr21:5218767-5218986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 123
               

               
Conread position:
               
349-556
               

               
Cow position:
               
chr21:44732979-44732770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
349-557
               

               
Cow position:
               
chr21:30977192-30976994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
8, 63
               

               
Conread position:
               
349-565
               

               
Cow position:
               
chr21:38482448-38482666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
77, 17
               

               
Conread position:
               
349-581
               

               
Cow position:
               
chr21:22211318-22211552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
79, 198
               

               
Conread position:
               
350-532
               

               
Cow position:
               
chr21:43316829-43316643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
350-562
               

               
Cow position:
               
chr21:14228836-14228611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
351-532
               

               
Cow position:
               
chr21:45651393-45651212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
71, 164
               

               
Conread position:
               
351-554
               

               
Cow position:
               
chr21:7201216-7201426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
75, 134
               

               
Conread position:
               
352-576
               

               
Cow position:
               
chr21:22214400-22214633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
353-508
               

               
Cow position:
               
chr21:13043951-13043800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
73, 25
               

               
Conread position:
               
353-532
               

               
Cow position:
               
chr21:17302572-17302755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
353-532
               

               
Cow position:
               
chr21:42189688-42189511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
32, 110
               

               
Conread position:
               
353-556
               

               
Cow position:
               
chr21:34834013-34833808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
354-552
               

               
Cow position:
               
chr21:11099901-11099694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
76, 160
               

               
Conread position:
               
354-565
               

               
Cow position:
               
chr21:14638994-14639206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
82, 68
               

               
Conread position:
               
354-574
               

               
Cow position:
               
chr21:15869760-15869975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
74, 112
               

               
Conread position:
               
355-532
               

               
Cow position:
               
chr21:6317616-6317436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
67, 7
               

               
Conread position:
               
355-532
               

               
Cow position:
               
chr21:10072236-10072415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 7
               

               
Conread position:
               
355-532
               

               
Cow position:
               
chr21:19826290-19826470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
67, 5
               

               
Conread position:
               
357-547
               

               
Cow position:
               
chr21:15445004-15444818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
69, 29
               

               
Conread position:
               
358-480
               

               
Cow position:
               
chr21:21479227-21479104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 84
               

               
Conread position:
               
358-519
               

               
Cow position:
               
chr21:19248914-19248749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
358-564
               

               
Cow position:
               
chr21:10751118-10751326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
76, 48
               

               
Conread position:
               
358-569
               

               
Cow position:
               
chr21:34737240-34737445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
104, 54
               

               
Conread position:
               
359-515
               

               
Cow position:
               
chr21:12640545-12640705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
359-525
               

               
Cow position:
               
chr21:39268876-39269045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
359-530
               

               
Cow position:
               
chr21:18783394-18783219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
77, 113
               

               
Conread position:
               
359-531
               

               
Cow position:
               
chr21:35252522-35252695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 120
               

               
Conread position:
               
359-532
               

               
Cow position:
               
chr21:11743429-11743244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
359-532
               

               
Cow position:
               
chr21:24350927-24351100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
63, 45
               

               
Conread position:
               
359-532
               

               
Cow position:
               
chr21:32648114-32647937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
359-532
               

               
Cow position:
               
chr21:36115678-36115856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
359-552
               

               
Cow position:
               
chr21:8986097-8986295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
67, 20
               

               
Conread position:
               
359-554
               

               
Cow position:
               
chr21:10138010-10138211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
359-556
               

               
Cow position:
               
chr21:874396-874604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
359-556
               

               
Cow position:
               
chr21:4108850-4109050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
67, 133
               

               
Conread position:
               
359-556
               

               
Cow position:
               
chr21:5214423-5214629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
359-565
               

               
Cow position:
               
chr21:41540861-41540649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
359-565
               

               
Cow position:
               
chr21:42131280-42131057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 218
               

               
Conread position:
               
359-566
               

               
Cow position:
               
chr21:20193045-20193255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
69, 188
               

               
Conread position:
               
360-523
               

               
Cow position:
               
chr21:9341882-9341715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
360-547
               

               
Cow position:
               
chr21:15305223-15305031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
360-572
               

               
Cow position:
               
chr21:18449829-18450046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
68, 34
               

               
Conread position:
               
361-515
               

               
Cow position:
               
chr21:39681213-39681371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
361-532
               

               
Cow position:
               
chr21:18561398-18561223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
361-541
               

               
Cow position:
               
chr21:8494717-8494901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
67, 85
               

               
Conread position:
               
361-547
               

               
Cow position:
               
chr21:26454929-26454737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
361-552
               

               
Cow position:
               
chr21:19014801-19014605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
361-554
               

               
Cow position:
               
chr21:37361165-37360968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 114
               

               
Conread position:
               
361-558
               

               
Cow position:
               
chr21:8509357-8509161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
65, 112
               

               
Conread position:
               
361-598
               

               
Cow position:
               
chr21:14247212-14247450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
362-532
               

               
Cow position:
               
chr21:18578484-18578319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
362-553
               

               
Cow position:
               
chr21:7539450-7539251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
362-556
               

               
Cow position:
               
chr21:16796928-16797130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
362-556
               

               
Cow position:
               
chr21:39278219-39278014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
362-571
               

               
Cow position:
               
chr21:30045793-30046006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
53, 148
               

               
Conread position:
               
363-523
               

               
Cow position:
               
chr21:21167803-21167967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
71, 66
               

               
Conread position:
               
363-555
               

               
Cow position:
               
chr21:10587408-10587213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
71, 66
               

               
Conread position:
               
363-556
               

               
Cow position:
               
chr21:10660814-10660613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
59, 156
               

               
Conread position:
               
364-557
               

               
Cow position:
               
chr21:45376031-45376221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 19
               

               
Conread position:
               
364-590
               

               
Cow position:
               
chr21:20199352-20199122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
5, 168
               

               
Conread position:
               
365-551
               

               
Cow position:
               
chr21:16120079-16119894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
366-529
               

               
Cow position:
               
chr21:42343783-42343946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 127
               

               
Conread position:
               
366-548
               

               
Cow position:
               
chr21:41737990-41738173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 132
               

               
Conread position:
               
366-553
               

               
Cow position:
               
chr21:24611691-24611501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
366-554
               

               
Cow position:
               
chr21:11340467-11340665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
366-554
               

               
Cow position:
               
chr21:40457683-40457885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
62, 123
               

               
Conread position:
               
366-556
               

               
Cow position:
               
chr21:11006689-11006490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
59, 81
               

               
Conread position:
               
366-563
               

               
Cow position:
               
chr21:28882263-28882469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
366-565
               

               
Cow position:
               
chr21:27744107-27744311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
60, 89
               

               
Conread position:
               
367-523
               

               
Cow position:
               
chr21:18612537-18612388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
98, 7
               

               
Conread position:
               
367-552
               

               
Cow position:
               
chr21:22720657-22720836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
95, 11
               

               
Conread position:
               
367-555
               

               
Cow position:
               
chr21:874605-874796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 171
               

               
Conread position:
               
367-558
               

               
Cow position:
               
chr21:19083503-19083303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
367-576
               

               
Cow position:
               
chr21:1464426-1464636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
59, 152
               

               
Conread position:
               
368-533
               

               
Cow position:
               
chr21:16790061-16790238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
368-554
               

               
Cow position:
               
chr21:22525098-22524903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
368-602
               

               
Cow position:
               
chr21:14595998-14596241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 211
               

               
Conread position:
               
369-525
               

               
Cow position:
               
chr21:41437693-41437854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
369-547
               

               
Cow position:
               
chr21:58534-58710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
5, 30
               

               
Conread position:
               
369-549
               

               
Cow position:
               
chr21:17671359-17671542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
369-556
               

               
Cow position:
               
chr21:45537271-45537464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
369-565
               

               
Cow position:
               
chr21:24757026-24757221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
369-565
               

               
Cow position:
               
chr21:31278268-31278468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
46, 180
               

               
Conread position:
               
369-572
               

               
Cow position:
               
chr21:8651369-8651576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 179
               

               
Conread position:
               
370-529
               

               
Cow position:
               
chr21:7424928-7424767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
371-516
               

               
Cow position:
               
chr21:3177934-3178081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
57, 133
               

               
Conread position:
               
371-548
               

               
Cow position:
               
chr21:3135782-3135603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
57, 146
               

               
Conread position:
               
371-549
               

               
Cow position:
               
chr21:438649-438822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 86
               

               
Conread position:
               
371-553
               

               
Cow position:
               
chr21:6291833-6292024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
371-556
               

               
Cow position:
               
chr21:47860685-47860880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
371-557
               

               
Cow position:
               
chr21:13134688-13134876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
51, 18
               

               
Conread position:
               
371-564
               

               
Cow position:
               
chr21:12473969-12473782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
374-532
               

               
Cow position:
               
chr21:8351204-8351045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 92
               

               
Conread position:
               
374-543
               

               
Cow position:
               
chr21:6391431-6391607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
374-550
               

               
Cow position:
               
chr21:32272010-32272197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
53, 78
               

               
Conread position:
               
374-556
               

               
Cow position:
               
chr21:41194065-41193879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
53, 108
               

               
Conread position:
               
374-557
               

               
Cow position:
               
chr21:29011880-29011702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 23
               

               
Conread position:
               
375-532
               

               
Cow position:
               
chr21:37495855-37495695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
24, 114
               

               
Conread position:
               
376-565
               

               
Cow position:
               
chr21:9873409-9873600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 128
               

               
Conread position:
               
378-520
               

               
Cow position:
               
chr21:42905304-42905158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
378-540
               

               
Cow position:
               
chr21:34722903-34723068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 40
               

               
Conread position:
               
380-550
               

               
Cow position:
               
chr21:41482879-41482701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 29
               

               
Conread position:
               
380-559
               

               
Cow position:
               
chr21:10829774-10829592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 167
               

               
Conread position:
               
380-566
               

               
Cow position:
               
chr21:19990721-19990538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 70
               

               
Conread position:
               
383-547
               

               
Cow position:
               
chr21:19176341-19176508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 88
               

               
Conread position:
               
383-553
               

               
Cow position:
               
chr21:32536495-32536661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
383-555
               

               
Cow position:
               
chr21:19394784-19394609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
51, 164
               

               
Conread position:
               
384-532
               

               
Cow position:
               
chr21:8359125-8358980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 78
               

               
Conread position:
               
384-552
               

               
Cow position:
               
chr21:6041884-6042058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
384-556
               

               
Cow position:
               
chr21:7357642-7357823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
384-556
               

               
Cow position:
               
chr21:18495321-18495489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
385-565
               

               
Cow position:
               
chr21:742378-742555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
41, 81
               

               
Conread position:
               
387-549
               

               
Cow position:
               
chr21:43655805-43655968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 69
               

               
Conread position:
               
388-531
               

               
Cow position:
               
chr21:48205117-48204970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
389-532
               

               
Cow position:
               
chr21:34727312-34727453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
392-532
               

               
Cow position:
               
chr21:31258574-31258718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
392-554
               

               
Cow position:
               
chr21:42047934-42047764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
36, 128
               

               
Conread position:
               
392-556
               

               
Cow position:
               
chr21:39788431-39788266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
36, 124
               

               
Conread position:
               
392-566
               

               
Cow position:
               
chr21:42227587-42227412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
72, 19
               

               
Conread position:
               
393-555
               

               
Cow position:
               
chr21:24061086-24060914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
394-564
               

               
Cow position:
               
chr21:5344988-5345160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 153
               

               
Conread position:
               
395-573
               

               
Cow position:
               
chr21:19236859-19236674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
399-532
               

               
Cow position:
               
chr21:19340117-19339981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
399-554
               

               
Cow position:
               
chr21:17856880-17857036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
401-535
               

               
Cow position:
               
chr21:40916600-40916733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
401-555
               

               
Cow position:
               
chr21:30359228-30359079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
25, 8
               

               
Conread position:
               
401-605
               

               
Cow position:
               
chr21:30794309-30794098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 187
               

               
Conread position:
               
402-558
               

               
Cow position:
               
chr21:8880235-8880071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
404-551
               

               
Cow position:
               
chr21:37014306-37014157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
24, 9
               

               
Conread position:
               
405-559
               

               
Cow position:
               
chr21:16099444-16099280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
21, 151
               

               
Conread position:
               
409-554
               

               
Cow position:
               
chr21:48242931-48242779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
410-553
               

               
Cow position:
               
chr21:7535420-7535274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 97
               

               
Conread position:
               
411-543
               

               
Cow position:
               
chr21:47784719-47784855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
411-565
               

               
Cow position:
               
chr21:34209889-34209732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 100
               

               
Conread position:
               
417-554
               

               
Cow position:
               
chr21:49144870-49144724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
422-556
               

               
Cow position:
               
chr21:20185388-20185520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
422-556
               

               
Cow position:
               
chr21:41829241-41829100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
425-556
               

               
Cow position:
               
chr21:12293164-12293298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 91
               

               
Conread position:
               
428-549
               

               
Cow position:
               
chr21:785668-785546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
433-551
               

               
Cow position:
               
chr21:20585527-20585408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 41
               

               
Conread position:
               
433-553
               

               
Cow position:
               
chr21:28955771-28955889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
447-553
               

               
Cow position:
               
chr21:49627396-49627288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               
Show alignments to all cow chromosomes.