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Cow genome map

           
Conread name:
           
Utr1-UTR01D100091
        

               
Conread position:
               
253-528
               

               
Cow position:
               
chr29:38581880-38582150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
16, 65
               

               
Conread position:
               
256-532
               

               
Cow position:
               
chr29:25268033-25268322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
256-551
               

               
Cow position:
               
chr29:14838900-14838598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
256-566
               

               
Cow position:
               
chr29:4492348-4492649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
87, 45
               

               
Conread position:
               
258-541
               

               
Cow position:
               
chr29:24035493-24035212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
258-556
               

               
Cow position:
               
chr29:8293007-8292705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 57
               

               
Conread position:
               
259-531
               

               
Cow position:
               
chr29:25944396-25944111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
68, 52
               

               
Conread position:
               
259-582
               

               
Cow position:
               
chr29:25950252-25949915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
68, 52
               

               
Conread position:
               
260-556
               

               
Cow position:
               
chr29:27668749-27668446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
60, 26
               

               
Conread position:
               
261-532
               

               
Cow position:
               
chr29:29183631-29183907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
106, 71
               

               
Conread position:
               
261-555
               

               
Cow position:
               
chr29:26017595-26017294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
262-507
               

               
Cow position:
               
chr29:42771557-42771791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
262-516
               

               
Cow position:
               
chr29:12900639-12900382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
53, 19
               

               
Conread position:
               
262-535
               

               
Cow position:
               
chr29:27618788-27619068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 135
               

               
Conread position:
               
262-552
               

               
Cow position:
               
chr29:3685604-3685312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
131, 60
               

               
Conread position:
               
262-565
               

               
Cow position:
               
chr29:22647758-22648062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
61, 70
               

               
Conread position:
               
262-565
               

               
Cow position:
               
chr29:29769443-29769137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
262-572
               

               
Cow position:
               
chr29:27652721-27652418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
265-480
               

               
Cow position:
               
chr29:40299101-40298888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
265-542
               

               
Cow position:
               
chr29:17109877-17110147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
166, 58
               

               
Conread position:
               
265-553
               

               
Cow position:
               
chr29:4085230-4085501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
166, 28
               

               
Conread position:
               
265-554
               

               
Cow position:
               
chr29:28775548-28775265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 72
               

               
Conread position:
               
265-557
               

               
Cow position:
               
chr29:20626485-20626785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
163, 27
               

               
Conread position:
               
266-550
               

               
Cow position:
               
chr29:9709611-9709895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
89, 62
               

               
Conread position:
               
270-556
               

               
Cow position:
               
chr29:5520568-5520271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 209
               

               
Conread position:
               
274-552
               

               
Cow position:
               
chr29:7310604-7310867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
155, 19
               

               
Conread position:
               
274-582
               

               
Cow position:
               
chr29:35434783-35435091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 49
               

               
Conread position:
               
276-532
               

               
Cow position:
               
chr29:7124739-7125005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
294-535
               

               
Cow position:
               
chr29:21706448-21706210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
142, 27
               

               
Conread position:
               
299-515
               

               
Cow position:
               
chr29:13639415-13639197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
299-532
               

               
Cow position:
               
chr29:40117523-40117749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
127, 24
               

               
Conread position:
               
299-577
               

               
Cow position:
               
chr29:22068790-22068509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
165, 36
               

               
Conread position:
               
301-562
               

               
Cow position:
               
chr29:18200735-18200998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
302-523
               

               
Cow position:
               
chr29:27524884-27524658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
302-529
               

               
Cow position:
               
chr29:23825255-23825031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
124, 13
               

               
Conread position:
               
302-532
               

               
Cow position:
               
chr29:23115049-23114816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
17, 31
               

               
Conread position:
               
302-584
               

               
Cow position:
               
chr29:16272694-16272978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
303-551
               

               
Cow position:
               
chr29:5788982-5789218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 30
               

               
Conread position:
               
303-556
               

               
Cow position:
               
chr29:20770301-20770552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
303-562
               

               
Cow position:
               
chr29:36522407-36522141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
12, 30
               

               
Conread position:
               
303-581
               

               
Cow position:
               
chr29:5831067-5830783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
304-532
               

               
Cow position:
               
chr29:30548731-30548957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
120, 28
               

               
Conread position:
               
304-532
               

               
Cow position:
               
chr29:35405834-35405606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
115, 28
               

               
Conread position:
               
304-532
               

               
Cow position:
               
chr29:35677591-35677357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
304-532
               

               
Cow position:
               
chr29:39111356-39111140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
122, 28
               

               
Conread position:
               
304-554
               

               
Cow position:
               
chr29:8163874-8163616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
305-532
               

               
Cow position:
               
chr29:14501548-14501779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
305-533
               

               
Cow position:
               
chr29:5121911-5121676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
44, 23
               

               
Conread position:
               
305-543
               

               
Cow position:
               
chr29:31928944-31929181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
8, 28
               

               
Conread position:
               
305-550
               

               
Cow position:
               
chr29:17297091-17297340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
305-557
               

               
Cow position:
               
chr29:21196696-21196438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
52, 163
               

               
Conread position:
               
305-565
               

               
Cow position:
               
chr29:36248991-36249253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
39, 232
               

               
Conread position:
               
305-579
               

               
Cow position:
               
chr29:23577834-23577556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
306-478
               

               
Cow position:
               
chr29:7103514-7103690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
306-523
               

               
Cow position:
               
chr29:17168367-17168580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
37, 9
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr29:7956034-7955804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
306-541
               

               
Cow position:
               
chr29:43544643-43544412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
120, 16
               

               
Conread position:
               
306-551
               

               
Cow position:
               
chr29:29057138-29057381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 16
               

               
Conread position:
               
306-554
               

               
Cow position:
               
chr29:14112334-14112591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
306-555
               

               
Cow position:
               
chr29:3237398-3237141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
306-555
               

               
Cow position:
               
chr29:30827361-30827614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
306-555
               

               
Cow position:
               
chr29:41530806-41531057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
306-556
               

               
Cow position:
               
chr29:38348073-38347820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
306-557
               

               
Cow position:
               
chr29:6337620-6337860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
157, 26
               

               
Conread position:
               
306-562
               

               
Cow position:
               
chr29:4625040-4624785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
306-562
               

               
Cow position:
               
chr29:12025511-12025260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
13, 27
               

               
Conread position:
               
306-564
               

               
Cow position:
               
chr29:40096922-40097197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
13, 27
               

               
Conread position:
               
306-565
               

               
Cow position:
               
chr29:23825627-23825879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
67, 26
               

               
Conread position:
               
306-565
               

               
Cow position:
               
chr29:23844793-23845056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
306-567
               

               
Cow position:
               
chr29:11611797-11612063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
306-602
               

               
Cow position:
               
chr29:3584153-3583864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
120, 26
               

               
Conread position:
               
307-516
               

               
Cow position:
               
chr29:22778218-22778010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
307-523
               

               
Cow position:
               
chr29:20910734-20910515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
307-548
               

               
Cow position:
               
chr29:17462828-17462579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
307-553
               

               
Cow position:
               
chr29:8669324-8669559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
155, 25
               

               
Conread position:
               
307-555
               

               
Cow position:
               
chr29:34744662-34744424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
155, 25
               

               
Conread position:
               
307-578
               

               
Cow position:
               
chr29:18754906-18754634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 26
               

               
Conread position:
               
307-578
               

               
Cow position:
               
chr29:43183352-43183088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
115, 7
               

               
Conread position:
               
308-517
               

               
Cow position:
               
chr29:87051-86835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
118, 18
               

               
Conread position:
               
309-514
               

               
Cow position:
               
chr29:45589630-45589434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 109
               

               
Conread position:
               
309-574
               

               
Cow position:
               
chr29:42630082-42630344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
123, 14
               

               
Conread position:
               
311-523
               

               
Cow position:
               
chr29:5275290-5275076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
311-565
               

               
Cow position:
               
chr29:23637717-23637456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
312-581
               

               
Cow position:
               
chr29:396376-396640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
114, 20
               

               
Conread position:
               
314-517
               

               
Cow position:
               
chr29:29795422-29795211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
314-565
               

               
Cow position:
               
chr29:7109301-7109557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
120, 18
               

               
Conread position:
               
316-480
               

               
Cow position:
               
chr29:16365921-16365753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
316-510
               

               
Cow position:
               
chr29:29975005-29975201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
111, 12
               

               
Conread position:
               
316-532
               

               
Cow position:
               
chr29:32799736-32799519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
106, 7
               

               
Conread position:
               
316-532
               

               
Cow position:
               
chr29:33321317-33321533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
111, 62
               

               
Conread position:
               
316-553
               

               
Cow position:
               
chr29:4070595-4070825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
316-556
               

               
Cow position:
               
chr29:22167111-22166874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
217, 12
               

               
Conread position:
               
316-575
               

               
Cow position:
               
chr29:20527196-20526936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
317-523
               

               
Cow position:
               
chr29:19389446-19389655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
317-523
               

               
Cow position:
               
chr29:22184229-22184436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
317-523
               

               
Cow position:
               
chr29:24045964-24046173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
317-530
               

               
Cow position:
               
chr29:5769761-5769973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
317-531
               

               
Cow position:
               
chr29:5892813-5893029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
105, 18
               

               
Conread position:
               
317-532
               

               
Cow position:
               
chr29:1011613-1011409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
110, 66
               

               
Conread position:
               
317-532
               

               
Cow position:
               
chr29:21508388-21508163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
317-532
               

               
Cow position:
               
chr29:24188097-24187879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
317-547
               

               
Cow position:
               
chr29:22720683-22720448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
317-548
               

               
Cow position:
               
chr29:363217-363455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
317-549
               

               
Cow position:
               
chr29:20167392-20167624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
111, 18
               

               
Conread position:
               
317-552
               

               
Cow position:
               
chr29:36530835-36531070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
102, 23
               

               
Conread position:
               
317-553
               

               
Cow position:
               
chr29:5995126-5994884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
317-553
               

               
Cow position:
               
chr29:36220502-36220747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
317-554
               

               
Cow position:
               
chr29:26259444-26259682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 11
               

               
Conread position:
               
317-555
               

               
Cow position:
               
chr29:15944528-15944767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
317-555
               

               
Cow position:
               
chr29:37618273-37618514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
62, 15
               

               
Conread position:
               
317-555
               

               
Cow position:
               
chr29:39280187-39280429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
26, 192
               

               
Conread position:
               
317-556
               

               
Cow position:
               
chr29:17804503-17804740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
109, 11
               

               
Conread position:
               
317-557
               

               
Cow position:
               
chr29:23711944-23711689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
317-562
               

               
Cow position:
               
chr29:20673842-20673596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
317-564
               

               
Cow position:
               
chr29:2744299-2744052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
317-564
               

               
Cow position:
               
chr29:4520308-4520548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
317-565
               

               
Cow position:
               
chr29:25814868-25814620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
317-570
               

               
Cow position:
               
chr29:29588958-29588705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
317-572
               

               
Cow position:
               
chr29:25874503-25874247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
317-587
               

               
Cow position:
               
chr29:32894227-32894502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
14, 154
               

               
Conread position:
               
318-514
               

               
Cow position:
               
chr29:30713740-30713551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
144, 22
               

               
Conread position:
               
318-532
               

               
Cow position:
               
chr29:4418793-4419011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
109, 17
               

               
Conread position:
               
318-532
               

               
Cow position:
               
chr29:4460093-4460310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
24, 10
               

               
Conread position:
               
318-532
               

               
Cow position:
               
chr29:15947136-15947353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 17
               

               
Conread position:
               
318-542
               

               
Cow position:
               
chr29:19909924-19910157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
318-553
               

               
Cow position:
               
chr29:16278957-16279182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
318-555
               

               
Cow position:
               
chr29:35458802-35458563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
113, 22
               

               
Conread position:
               
318-562
               

               
Cow position:
               
chr29:32656402-32656648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
111, 14
               

               
Conread position:
               
318-565
               

               
Cow position:
               
chr29:12680125-12680375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
108, 14
               

               
Conread position:
               
319-523
               

               
Cow position:
               
chr29:29974046-29973838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
24, 41
               

               
Conread position:
               
319-546
               

               
Cow position:
               
chr29:5109214-5108985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
109, 13
               

               
Conread position:
               
319-574
               

               
Cow position:
               
chr29:16290696-16290948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
109, 13
               

               
Conread position:
               
321-532
               

               
Cow position:
               
chr29:36586539-36586753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
321-555
               

               
Cow position:
               
chr29:40610662-40610425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
321-567
               

               
Cow position:
               
chr29:28420727-28420975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
321-576
               

               
Cow position:
               
chr29:3549575-3549834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
24, 10
               

               
Conread position:
               
322-530
               

               
Cow position:
               
chr29:5409168-5408960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
108, 10
               

               
Conread position:
               
322-532
               

               
Cow position:
               
chr29:22028981-22028777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
322-532
               

               
Cow position:
               
chr29:30440907-30441123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 10
               

               
Conread position:
               
322-532
               

               
Cow position:
               
chr29:35258958-35259165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
113, 10
               

               
Conread position:
               
322-532
               

               
Cow position:
               
chr29:35501681-35501481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
104, 10
               

               
Conread position:
               
322-532
               

               
Cow position:
               
chr29:36357102-36357312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
104, 10
               

               
Conread position:
               
322-532
               

               
Cow position:
               
chr29:36632888-36632676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
322-542
               

               
Cow position:
               
chr29:17222386-17222610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
108, 10
               

               
Conread position:
               
322-549
               

               
Cow position:
               
chr29:18450162-18449937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 10
               

               
Conread position:
               
322-555
               

               
Cow position:
               
chr29:5046626-5046866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
109, 10
               

               
Conread position:
               
322-555
               

               
Cow position:
               
chr29:35292065-35292292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
322-556
               

               
Cow position:
               
chr29:13028417-13028659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
104, 10
               

               
Conread position:
               
322-556
               

               
Cow position:
               
chr29:31934352-31934584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
105, 10
               

               
Conread position:
               
322-565
               

               
Cow position:
               
chr29:16609721-16609965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
322-565
               

               
Cow position:
               
chr29:16657667-16657904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
322-566
               

               
Cow position:
               
chr29:23874433-23874682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
322-571
               

               
Cow position:
               
chr29:30227302-30227060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
109, 10
               

               
Conread position:
               
322-572
               

               
Cow position:
               
chr29:2263019-2262757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
104, 10
               

               
Conread position:
               
322-578
               

               
Cow position:
               
chr29:4120827-4121091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
104, 10
               

               
Conread position:
               
323-514
               

               
Cow position:
               
chr29:28979525-28979347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
103, 51
               

               
Conread position:
               
323-532
               

               
Cow position:
               
chr29:34359847-34359642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
105, 34
               

               
Conread position:
               
323-537
               

               
Cow position:
               
chr29:12783986-12783766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
92, 9
               

               
Conread position:
               
323-547
               

               
Cow position:
               
chr29:2056035-2056259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
112, 12
               

               
Conread position:
               
323-549
               

               
Cow position:
               
chr29:4423465-4423252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
108, 9
               

               
Conread position:
               
323-556
               

               
Cow position:
               
chr29:29189121-29188888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
323-576
               

               
Cow position:
               
chr29:22690199-22690451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
108, 12
               

               
Conread position:
               
324-543
               

               
Cow position:
               
chr29:18556646-18556863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
106, 139
               

               
Conread position:
               
325-523
               

               
Cow position:
               
chr29:8816166-8815964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 55
               

               
Conread position:
               
329-475
               

               
Cow position:
               
chr29:6844653-6844505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
52, 25
               

               
Conread position:
               
329-532
               

               
Cow position:
               
chr29:24365918-24365713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
329-532
               

               
Cow position:
               
chr29:32656113-32655910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
70, 138
               

               
Conread position:
               
329-532
               

               
Cow position:
               
chr29:34745678-34745477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
329-532
               

               
Cow position:
               
chr29:35084243-35084039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
99, 180
               

               
Conread position:
               
329-543
               

               
Cow position:
               
chr29:24952667-24952882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
112, 85
               

               
Conread position:
               
329-547
               

               
Cow position:
               
chr29:21645297-21645516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
148, 45
               

               
Conread position:
               
329-553
               

               
Cow position:
               
chr29:42444586-42444805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
97, 45
               

               
Conread position:
               
329-556
               

               
Cow position:
               
chr29:34832406-34832186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
127, 55
               

               
Conread position:
               
329-557
               

               
Cow position:
               
chr29:40791289-40791507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
98, 49
               

               
Conread position:
               
329-572
               

               
Cow position:
               
chr29:44684082-44684328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
97, 30
               

               
Conread position:
               
330-530
               

               
Cow position:
               
chr29:3292928-3293125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
96, 120
               

               
Conread position:
               
330-530
               

               
Cow position:
               
chr29:11844215-11844005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
330-542
               

               
Cow position:
               
chr29:4492079-4491859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 195
               

               
Conread position:
               
330-547
               

               
Cow position:
               
chr29:28814000-28813773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
330-547
               

               
Cow position:
               
chr29:31786649-31786873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
27, 183
               

               
Conread position:
               
330-551
               

               
Cow position:
               
chr29:23697957-23698173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
57, 125
               

               
Conread position:
               
330-554
               

               
Cow position:
               
chr29:28735065-28734837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
98, 34
               

               
Conread position:
               
330-559
               

               
Cow position:
               
chr29:29475276-29475041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
96, 132
               

               
Conread position:
               
331-477
               

               
Cow position:
               
chr29:34687816-34687964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
331-514
               

               
Cow position:
               
chr29:21443357-21443170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
331-532
               

               
Cow position:
               
chr29:29324439-29324236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
154, 52
               

               
Conread position:
               
331-547
               

               
Cow position:
               
chr29:40891715-40891503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
131, 39
               

               
Conread position:
               
331-548
               

               
Cow position:
               
chr29:36952315-36952112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
331-564
               

               
Cow position:
               
chr29:38754958-38754720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 134
               

               
Conread position:
               
331-604
               

               
Cow position:
               
chr29:19949290-19949557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
14, 53
               

               
Conread position:
               
332-548
               

               
Cow position:
               
chr29:23876853-23876633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
11, 202
               

               
Conread position:
               
332-555
               

               
Cow position:
               
chr29:31674615-31674837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
102, 132
               

               
Conread position:
               
332-558
               

               
Cow position:
               
chr29:5667101-5666862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
332-565
               

               
Cow position:
               
chr29:5568471-5568707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 216
               

               
Conread position:
               
332-565
               

               
Cow position:
               
chr29:16200497-16200262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
15, 217
               

               
Conread position:
               
332-576
               

               
Cow position:
               
chr29:30097300-30097060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 90
               

               
Conread position:
               
333-532
               

               
Cow position:
               
chr29:44938008-44937811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 74
               

               
Conread position:
               
333-553
               

               
Cow position:
               
chr29:19176930-19176710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
66, 136
               

               
Conread position:
               
334-555
               

               
Cow position:
               
chr29:9800635-9800872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
94, 25
               

               
Conread position:
               
335-532
               

               
Cow position:
               
chr29:5063130-5063327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
92, 131
               

               
Conread position:
               
335-533
               

               
Cow position:
               
chr29:30681725-30681518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
87, 38
               

               
Conread position:
               
335-554
               

               
Cow position:
               
chr29:42364032-42363812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 113
               

               
Conread position:
               
335-565
               

               
Cow position:
               
chr29:33511744-33511509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
336-532
               

               
Cow position:
               
chr29:11227397-11227197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
336-532
               

               
Cow position:
               
chr29:23991843-23991645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
338-548
               

               
Cow position:
               
chr29:26540552-26540340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
88, 127
               

               
Conread position:
               
340-530
               

               
Cow position:
               
chr29:4053350-4053162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
88, 126
               

               
Conread position:
               
340-549
               

               
Cow position:
               
chr29:14552688-14552901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
340-556
               

               
Cow position:
               
chr29:20781002-20781228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
340-556
               

               
Cow position:
               
chr29:27683962-27683757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
340-565
               

               
Cow position:
               
chr29:28478317-28478547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
340-566
               

               
Cow position:
               
chr29:36781314-36781091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
86, 124
               

               
Conread position:
               
340-567
               

               
Cow position:
               
chr29:377448-377221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 6
               

               
Conread position:
               
340-575
               

               
Cow position:
               
chr29:34297578-34297347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
88, 124
               

               
Conread position:
               
341-477
               

               
Cow position:
               
chr29:25333468-25333332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
81, 48
               

               
Conread position:
               
341-530
               

               
Cow position:
               
chr29:7954976-7954782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
76, 42
               

               
Conread position:
               
341-556
               

               
Cow position:
               
chr29:3662144-3661923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
342-480
               

               
Cow position:
               
chr29:11042424-11042560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
342-532
               

               
Cow position:
               
chr29:19125314-19125514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
343-537
               

               
Cow position:
               
chr29:23913400-23913208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
91, 122
               

               
Conread position:
               
343-552
               

               
Cow position:
               
chr29:5953866-5953647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
344-532
               

               
Cow position:
               
chr29:31489313-31489508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
344-555
               

               
Cow position:
               
chr29:4022998-4023202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
344-579
               

               
Cow position:
               
chr29:32713155-32713395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 204
               

               
Conread position:
               
346-516
               

               
Cow position:
               
chr29:24051385-24051210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
85, 63
               

               
Conread position:
               
348-556
               

               
Cow position:
               
chr29:4441207-4440989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
348-562
               

               
Cow position:
               
chr29:29578975-29578759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
80, 200
               

               
Conread position:
               
348-565
               

               
Cow position:
               
chr29:14375883-14375664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
80, 199
               

               
Conread position:
               
349-516
               

               
Cow position:
               
chr29:18878482-18878311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
349-543
               

               
Cow position:
               
chr29:8634653-8634847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
73, 124
               

               
Conread position:
               
349-547
               

               
Cow position:
               
chr29:26631044-26631248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
77, 20
               

               
Conread position:
               
349-551
               

               
Cow position:
               
chr29:14576858-14577060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 108
               

               
Conread position:
               
349-557
               

               
Cow position:
               
chr29:24065681-24065899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 112
               

               
Conread position:
               
349-559
               

               
Cow position:
               
chr29:16735224-16735437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
79, 5
               

               
Conread position:
               
349-565
               

               
Cow position:
               
chr29:3711378-3711590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
113, 68
               

               
Conread position:
               
349-565
               

               
Cow position:
               
chr29:20087381-20087166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
349-576
               

               
Cow position:
               
chr29:21018747-21018518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
79, 198
               

               
Conread position:
               
349-593
               

               
Cow position:
               
chr29:8979575-8979315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 78
               

               
Conread position:
               
349-600
               

               
Cow position:
               
chr29:22579470-22579729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
79, 50
               

               
Conread position:
               
350-523
               

               
Cow position:
               
chr29:6819614-6819792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
350-532
               

               
Cow position:
               
chr29:17085682-17085497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
350-541
               

               
Cow position:
               
chr29:26411469-26411272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
350-551
               

               
Cow position:
               
chr29:19420613-19420417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
78, 116
               

               
Conread position:
               
350-576
               

               
Cow position:
               
chr29:39534668-39534440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
84, 100
               

               
Conread position:
               
351-518
               

               
Cow position:
               
chr29:5043381-5043552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
351-525
               

               
Cow position:
               
chr29:1738144-1738324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
351-532
               

               
Cow position:
               
chr29:19187027-19187210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
351-532
               

               
Cow position:
               
chr29:25793147-25793325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
351-555
               

               
Cow position:
               
chr29:26211053-26211259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
75, 104
               

               
Conread position:
               
351-561
               

               
Cow position:
               
chr29:22735447-22735229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
351-571
               

               
Cow position:
               
chr29:28087670-28087900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
357-532
               

               
Cow position:
               
chr29:35737320-35737133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
69, 170
               

               
Conread position:
               
359-523
               

               
Cow position:
               
chr29:29187947-29187779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
359-527
               

               
Cow position:
               
chr29:11116652-11116484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
67, 94
               

               
Conread position:
               
359-529
               

               
Cow position:
               
chr29:30742596-30742771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
359-530
               

               
Cow position:
               
chr29:26539244-26539413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
69, 118
               

               
Conread position:
               
359-533
               

               
Cow position:
               
chr29:23142325-23142147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
17, 7
               

               
Conread position:
               
359-547
               

               
Cow position:
               
chr29:4648200-4648013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
69, 98
               

               
Conread position:
               
359-552
               

               
Cow position:
               
chr29:25288914-25288715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
118, 50
               

               
Conread position:
               
359-555
               

               
Cow position:
               
chr29:13558342-13558543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
69, 190
               

               
Conread position:
               
359-555
               

               
Cow position:
               
chr29:22533970-22534170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
359-556
               

               
Cow position:
               
chr29:32215716-32215912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
14, 111
               

               
Conread position:
               
359-562
               

               
Cow position:
               
chr29:8629090-8628885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 179
               

               
Conread position:
               
360-505
               

               
Cow position:
               
chr29:5652950-5653099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
360-542
               

               
Cow position:
               
chr29:40351065-40350886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
177, 24
               

               
Conread position:
               
360-551
               

               
Cow position:
               
chr29:43088321-43088509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
66, 23
               

               
Conread position:
               
360-554
               

               
Cow position:
               
chr29:25432464-25432660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
361-532
               

               
Cow position:
               
chr29:20685180-20685355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
361-532
               

               
Cow position:
               
chr29:30217103-30216931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
64, 118
               

               
Conread position:
               
361-554
               

               
Cow position:
               
chr29:8799004-8798800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
361-556
               

               
Cow position:
               
chr29:26563812-26563607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
361-556
               

               
Cow position:
               
chr29:34669056-34668858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
361-559
               

               
Cow position:
               
chr29:26602210-26602410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
71, 188
               

               
Conread position:
               
362-531
               

               
Cow position:
               
chr29:33393690-33393871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
362-532
               

               
Cow position:
               
chr29:4484112-4484281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 22
               

               
Conread position:
               
362-557
               

               
Cow position:
               
chr29:4327605-4327800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 134
               

               
Conread position:
               
363-532
               

               
Cow position:
               
chr29:23819377-23819200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
363-532
               

               
Cow position:
               
chr29:34675996-34675823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
65, 140
               

               
Conread position:
               
363-565
               

               
Cow position:
               
chr29:14746793-14746993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
65, 102
               

               
Conread position:
               
364-532
               

               
Cow position:
               
chr29:22127884-22128048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
64, 110
               

               
Conread position:
               
365-525
               

               
Cow position:
               
chr29:23954645-23954809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
366-532
               

               
Cow position:
               
chr29:34355985-34356155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
366-532
               

               
Cow position:
               
chr29:39638860-39639024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
62, 84
               

               
Conread position:
               
366-547
               

               
Cow position:
               
chr29:3538660-3538486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
56, 98
               

               
Conread position:
               
366-559
               

               
Cow position:
               
chr29:19665958-19665759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
366-566
               

               
Cow position:
               
chr29:16598470-16598671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 33
               

               
Conread position:
               
367-532
               

               
Cow position:
               
chr29:44901646-44901477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
6, 81
               

               
Conread position:
               
367-549
               

               
Cow position:
               
chr29:40763677-40763495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 90
               

               
Conread position:
               
367-556
               

               
Cow position:
               
chr29:24614362-24614556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
367-565
               

               
Cow position:
               
chr29:22019171-22018963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
368-554
               

               
Cow position:
               
chr29:28715215-28715025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
369-551
               

               
Cow position:
               
chr29:10203791-10203972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
369-555
               

               
Cow position:
               
chr29:44895383-44895195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 177
               

               
Conread position:
               
369-556
               

               
Cow position:
               
chr29:37771867-37771677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 119
               

               
Conread position:
               
370-477
               

               
Cow position:
               
chr29:28242321-28242214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-555
               

               
Cow position:
               
chr29:936227-936415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 93
               

               
Conread position:
               
371-554
               

               
Cow position:
               
chr29:35189628-35189814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
57, 176
               

               
Conread position:
               
371-565
               

               
Cow position:
               
chr29:11894719-11894917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
371-577
               

               
Cow position:
               
chr29:22335208-22334997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
55, 130
               

               
Conread position:
               
373-551
               

               
Cow position:
               
chr29:10192016-10191842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 93
               

               
Conread position:
               
374-562
               

               
Cow position:
               
chr29:30089031-30088843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
375-532
               

               
Cow position:
               
chr29:22652348-22652503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 90
               

               
Conread position:
               
376-513
               

               
Cow position:
               
chr29:28279261-28279120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
376-532
               

               
Cow position:
               
chr29:30743690-30743526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
376-549
               

               
Cow position:
               
chr29:11081370-11081193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
377-525
               

               
Cow position:
               
chr29:28257168-28257319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
377-556
               

               
Cow position:
               
chr29:27997223-27997035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 69
               

               
Conread position:
               
377-576
               

               
Cow position:
               
chr29:42797983-42798180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
378-532
               

               
Cow position:
               
chr29:16561742-16561590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
49, 78
               

               
Conread position:
               
378-542
               

               
Cow position:
               
chr29:6756016-6756178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
378-549
               

               
Cow position:
               
chr29:18748362-18748186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
378-554
               

               
Cow position:
               
chr29:27042300-27042477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
53, 140
               

               
Conread position:
               
378-562
               

               
Cow position:
               
chr29:25092134-25092319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 79
               

               
Conread position:
               
379-542
               

               
Cow position:
               
chr29:25030250-25030082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
379-556
               

               
Cow position:
               
chr29:8605906-8605725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 120
               

               
Conread position:
               
379-556
               

               
Cow position:
               
chr29:24604925-24605104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
379-562
               

               
Cow position:
               
chr29:29265053-29264867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
49, 169
               

               
Conread position:
               
380-557
               

               
Cow position:
               
chr29:38732183-38732369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
383-554
               

               
Cow position:
               
chr29:33143321-33143151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
383-555
               

               
Cow position:
               
chr29:23678742-23678908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
383-561
               

               
Cow position:
               
chr29:25907279-25907469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 104
               

               
Conread position:
               
384-543
               

               
Cow position:
               
chr29:41422877-41422714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
384-561
               

               
Cow position:
               
chr29:2414718-2414537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 147
               

               
Conread position:
               
384-565
               

               
Cow position:
               
chr29:2219421-2219603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
42, 164
               

               
Conread position:
               
384-565
               

               
Cow position:
               
chr29:14828194-14828006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
46, 59
               

               
Conread position:
               
385-530
               

               
Cow position:
               
chr29:6517264-6517410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
387-552
               

               
Cow position:
               
chr29:7040835-7040664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
387-567
               

               
Cow position:
               
chr29:16438742-16438553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
388-554
               

               
Cow position:
               
chr29:24660723-24660884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 59
               

               
Conread position:
               
389-532
               

               
Cow position:
               
chr29:30920364-30920216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 120
               

               
Conread position:
               
393-554
               

               
Cow position:
               
chr29:36546739-36546576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
395-532
               

               
Cow position:
               
chr29:23735043-23734902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
395-555
               

               
Cow position:
               
chr29:24119455-24119292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
31, 152
               

               
Conread position:
               
395-562
               

               
Cow position:
               
chr29:41094162-41094330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 124
               

               
Conread position:
               
397-549
               

               
Cow position:
               
chr29:8841398-8841248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
399-565
               

               
Cow position:
               
chr29:42887018-42887188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
400-532
               

               
Cow position:
               
chr29:7143345-7143483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
402-557
               

               
Cow position:
               
chr29:35281516-35281686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
409-556
               

               
Cow position:
               
chr29:4741332-4741182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
19, 138
               

               
Conread position:
               
409-567
               

               
Cow position:
               
chr29:20643974-20644144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 119
               

               
Conread position:
               
414-553
               

               
Cow position:
               
chr29:16164372-16164229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
422-549
               

               
Cow position:
               
chr29:28726901-28727025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
422-555
               

               
Cow position:
               
chr29:26777082-26777216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 123
               

               
Conread position:
               
425-532
               

               
Cow position:
               
chr29:23209403-23209514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
426-553
               

               
Cow position:
               
chr29:34483549-34483420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
430-556
               

               
Cow position:
               
chr29:6716432-6716300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
430-565
               

               
Cow position:
               
chr29:659364-659498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
437-549
               

               
Cow position:
               
chr29:7452330-7452443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
442-562
               

               
Cow position:
               
chr29:31835366-31835484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
106, 20
               
Show alignments to all cow chromosomes.