• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Utr1-UTR01D100091
        

               
Conread position:
               
254-559
               

               
Cow position:
               
chr6:62437359-62437673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 70
               

               
Conread position:
               
255-515
               

               
Cow position:
               
chr6:48468946-48469219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 71
               

               
Conread position:
               
255-547
               

               
Cow position:
               
chr6:44566371-44566666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
25, 67
               

               
Conread position:
               
255-551
               

               
Cow position:
               
chr6:44078464-44078759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
255-555
               

               
Cow position:
               
chr6:4468715-4469013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
255-575
               

               
Cow position:
               
chr6:21467318-21466999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 87
               

               
Conread position:
               
255-582
               

               
Cow position:
               
chr6:4559357-4559024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
257-557
               

               
Cow position:
               
chr6:48803684-48803390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
258-556
               

               
Cow position:
               
chr6:323351-323053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
258-576
               

               
Cow position:
               
chr6:58304364-58304690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
74, 24
               

               
Conread position:
               
260-556
               

               
Cow position:
               
chr6:40050024-40050329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 62
               

               
Conread position:
               
262-508
               

               
Cow position:
               
chr6:67281846-67282092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
262-523
               

               
Cow position:
               
chr6:54036190-54035924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
262-532
               

               
Cow position:
               
chr6:46558003-46558279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
262-548
               

               
Cow position:
               
chr6:38441125-38441421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
262-553
               

               
Cow position:
               
chr6:65264589-65264304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
262-556
               

               
Cow position:
               
chr6:17997365-17997068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
262-557
               

               
Cow position:
               
chr6:21004623-21004935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
262-560
               

               
Cow position:
               
chr6:32268927-32268634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
263-553
               

               
Cow position:
               
chr6:19292749-19293044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 200
               

               
Conread position:
               
264-483
               

               
Cow position:
               
chr6:47339402-47339179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
264-532
               

               
Cow position:
               
chr6:57546269-57546004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
264-560
               

               
Cow position:
               
chr6:4383437-4383725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 29
               

               
Conread position:
               
264-576
               

               
Cow position:
               
chr6:54854199-54854526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
93, 58
               

               
Conread position:
               
265-528
               

               
Cow position:
               
chr6:28482970-28483238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
52, 21
               

               
Conread position:
               
265-556
               

               
Cow position:
               
chr6:15937903-15937602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
268-576
               

               
Cow position:
               
chr6:23025146-23024831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 69
               

               
Conread position:
               
270-556
               

               
Cow position:
               
chr6:1703769-1704049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
195, 22
               

               
Conread position:
               
270-556
               

               
Cow position:
               
chr6:28559490-28559794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
92, 65
               

               
Conread position:
               
276-559
               

               
Cow position:
               
chr6:63426632-63426920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 59
               

               
Conread position:
               
289-547
               

               
Cow position:
               
chr6:12928130-12928380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
139, 27
               

               
Conread position:
               
290-557
               

               
Cow position:
               
chr6:8731386-8731669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
293-531
               

               
Cow position:
               
chr6:32867235-32866997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
294-565
               

               
Cow position:
               
chr6:54846291-54846016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
298-532
               

               
Cow position:
               
chr6:21061890-21061666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
124, 37
               

               
Conread position:
               
298-576
               

               
Cow position:
               
chr6:17704822-17705100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
299-532
               

               
Cow position:
               
chr6:54132808-54133036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
127, 35
               

               
Conread position:
               
300-585
               

               
Cow position:
               
chr6:68272584-68272886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 26
               

               
Conread position:
               
301-532
               

               
Cow position:
               
chr6:1770205-1769969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
301-532
               

               
Cow position:
               
chr6:16261777-16262006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
301-557
               

               
Cow position:
               
chr6:23695995-23696249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
125, 26
               

               
Conread position:
               
302-520
               

               
Cow position:
               
chr6:46462387-46462168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 29
               

               
Conread position:
               
302-523
               

               
Cow position:
               
chr6:35842654-35842876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
302-542
               

               
Cow position:
               
chr6:62056611-62056846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
124, 13
               

               
Conread position:
               
302-555
               

               
Cow position:
               
chr6:54430824-54431083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
302-565
               

               
Cow position:
               
chr6:9718917-9718660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
126, 33
               

               
Conread position:
               
302-572
               

               
Cow position:
               
chr6:50746991-50747268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
302-580
               

               
Cow position:
               
chr6:47782852-47783141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
303-530
               

               
Cow position:
               
chr6:18118053-18117828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
123, 43
               

               
Conread position:
               
303-565
               

               
Cow position:
               
chr6:16266720-16266988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 28
               

               
Conread position:
               
303-565
               

               
Cow position:
               
chr6:64429200-64428938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
303-580
               

               
Cow position:
               
chr6:47520049-47520329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
123, 25
               

               
Conread position:
               
304-510
               

               
Cow position:
               
chr6:36189695-36189903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
304-527
               

               
Cow position:
               
chr6:28973037-28972813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
304-532
               

               
Cow position:
               
chr6:66433947-66434179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
112, 19
               

               
Conread position:
               
304-550
               

               
Cow position:
               
chr6:60274013-60273763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
106, 19
               

               
Conread position:
               
304-556
               

               
Cow position:
               
chr6:21293498-21293249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
304-556
               

               
Cow position:
               
chr6:53145685-53145425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
124, 10
               

               
Conread position:
               
305-521
               

               
Cow position:
               
chr6:47833125-47832898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 28
               

               
Conread position:
               
305-532
               

               
Cow position:
               
chr6:68816167-68816395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
121, 18
               

               
Conread position:
               
305-541
               

               
Cow position:
               
chr6:54365332-54365095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
27, 128
               

               
Conread position:
               
305-546
               

               
Cow position:
               
chr6:12912035-12912280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
305-546
               

               
Cow position:
               
chr6:12914467-12914712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
305-549
               

               
Cow position:
               
chr6:37467545-37467296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
305-554
               

               
Cow position:
               
chr6:67187680-67187931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
305-559
               

               
Cow position:
               
chr6:43345445-43345189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
36, 21
               

               
Conread position:
               
305-565
               

               
Cow position:
               
chr6:32453384-32453646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 9
               

               
Conread position:
               
305-565
               

               
Cow position:
               
chr6:60783867-60784127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
305-570
               

               
Cow position:
               
chr6:5845173-5844907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
38, 26
               

               
Conread position:
               
305-570
               

               
Cow position:
               
chr6:42034770-42035036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
131, 30
               

               
Conread position:
               
305-576
               

               
Cow position:
               
chr6:51541005-51541282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
306-480
               

               
Cow position:
               
chr6:16764655-16764470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
306-523
               

               
Cow position:
               
chr6:16746341-16746562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
306-523
               

               
Cow position:
               
chr6:52412859-52413078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr6:39093747-39093970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr6:41733625-41733860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
74, 26
               

               
Conread position:
               
306-542
               

               
Cow position:
               
chr6:38609967-38610209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
306-546
               

               
Cow position:
               
chr6:55297096-55296848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
17, 8
               

               
Conread position:
               
306-549
               

               
Cow position:
               
chr6:21475723-21475966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 142
               

               
Conread position:
               
306-552
               

               
Cow position:
               
chr6:16765398-16765153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
306-554
               

               
Cow position:
               
chr6:47540850-47540587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
306-555
               

               
Cow position:
               
chr6:5330410-5330667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 135
               

               
Conread position:
               
306-556
               

               
Cow position:
               
chr6:7801394-7801146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 52
               

               
Conread position:
               
306-556
               

               
Cow position:
               
chr6:51539085-51538816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
306-557
               

               
Cow position:
               
chr6:28148252-28148514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
306-594
               

               
Cow position:
               
chr6:14914241-14913950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
13, 53
               

               
Conread position:
               
306-601
               

               
Cow position:
               
chr6:5095547-5095247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
307-468
               

               
Cow position:
               
chr6:37783401-37783562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
119, 7
               

               
Conread position:
               
307-479
               

               
Cow position:
               
chr6:582272-582100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
119, 27
               

               
Conread position:
               
307-531
               

               
Cow position:
               
chr6:60516825-60517062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
307-532
               

               
Cow position:
               
chr6:13510175-13510397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
115, 17
               

               
Conread position:
               
307-532
               

               
Cow position:
               
chr6:18608817-18608585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
307-532
               

               
Cow position:
               
chr6:52431026-52430794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
307-532
               

               
Cow position:
               
chr6:56393771-56393998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
307-532
               

               
Cow position:
               
chr6:60819515-60819740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
307-533
               

               
Cow position:
               
chr6:51835398-51835624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
307-541
               

               
Cow position:
               
chr6:19695811-19696043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 18
               

               
Conread position:
               
307-555
               

               
Cow position:
               
chr6:17313733-17313992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
307-555
               

               
Cow position:
               
chr6:62669866-62670125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 16
               

               
Conread position:
               
307-556
               

               
Cow position:
               
chr6:8125324-8125574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
307-558
               

               
Cow position:
               
chr6:61824414-61824663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
159, 19
               

               
Conread position:
               
307-562
               

               
Cow position:
               
chr6:48010523-48010268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
307-565
               

               
Cow position:
               
chr6:8562720-8562978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 26
               

               
Conread position:
               
307-570
               

               
Cow position:
               
chr6:8600002-8600271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
121, 16
               

               
Conread position:
               
307-579
               

               
Cow position:
               
chr6:64431935-64432207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
308-508
               

               
Cow position:
               
chr6:2153597-2153395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
120, 15
               

               
Conread position:
               
308-523
               

               
Cow position:
               
chr6:60121600-60121380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
7, 24
               

               
Conread position:
               
308-532
               

               
Cow position:
               
chr6:19996617-19996840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 24
               

               
Conread position:
               
308-549
               

               
Cow position:
               
chr6:15242834-15243081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
308-555
               

               
Cow position:
               
chr6:40032189-40032426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
18, 63
               

               
Conread position:
               
309-480
               

               
Cow position:
               
chr6:55535747-55535578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
309-547
               

               
Cow position:
               
chr6:12669102-12669338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
119, 23
               

               
Conread position:
               
309-565
               

               
Cow position:
               
chr6:35726098-35726348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
119, 5
               

               
Conread position:
               
310-543
               

               
Cow position:
               
chr6:33450965-33450743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
116, 13
               

               
Conread position:
               
310-556
               

               
Cow position:
               
chr6:42483416-42483669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
312-532
               

               
Cow position:
               
chr6:2584949-2585166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 10
               

               
Conread position:
               
314-550
               

               
Cow position:
               
chr6:43787905-43787665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
314-555
               

               
Cow position:
               
chr6:21535044-21535288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
314-574
               

               
Cow position:
               
chr6:50862948-50863212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
8, 18
               

               
Conread position:
               
315-532
               

               
Cow position:
               
chr6:63065835-63066062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 8
               

               
Conread position:
               
315-550
               

               
Cow position:
               
chr6:37692759-37692993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
117, 17
               

               
Conread position:
               
316-459
               

               
Cow position:
               
chr6:19681517-19681372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
316-479
               

               
Cow position:
               
chr6:37199518-37199365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
316-502
               

               
Cow position:
               
chr6:21590716-21590900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
316-513
               

               
Cow position:
               
chr6:69153422-69153618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
316-532
               

               
Cow position:
               
chr6:50467144-50467363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 10
               

               
Conread position:
               
316-532
               

               
Cow position:
               
chr6:50504465-50504681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
106, 16
               

               
Conread position:
               
316-549
               

               
Cow position:
               
chr6:30023894-30024119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
111, 16
               

               
Conread position:
               
316-551
               

               
Cow position:
               
chr6:15447190-15446952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
316-552
               

               
Cow position:
               
chr6:19446262-19446498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
86, 16
               

               
Conread position:
               
316-555
               

               
Cow position:
               
chr6:32121916-32122143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
316-556
               

               
Cow position:
               
chr6:21587421-21587183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
105, 16
               

               
Conread position:
               
316-556
               

               
Cow position:
               
chr6:38640242-38640485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
110, 11
               

               
Conread position:
               
316-558
               

               
Cow position:
               
chr6:58725379-58725619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
110, 19
               

               
Conread position:
               
316-559
               

               
Cow position:
               
chr6:18447509-18447264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
317-480
               

               
Cow position:
               
chr6:3592412-3592573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 17
               

               
Conread position:
               
317-505
               

               
Cow position:
               
chr6:55502776-55502971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
114, 18
               

               
Conread position:
               
317-510
               

               
Cow position:
               
chr6:21514597-21514403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 9
               

               
Conread position:
               
317-513
               

               
Cow position:
               
chr6:10488260-10488074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
111, 18
               

               
Conread position:
               
317-523
               

               
Cow position:
               
chr6:6724516-6724725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
317-530
               

               
Cow position:
               
chr6:13367295-13367505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
114, 23
               

               
Conread position:
               
317-530
               

               
Cow position:
               
chr6:46173248-46173035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
117, 15
               

               
Conread position:
               
317-532
               

               
Cow position:
               
chr6:7103231-7103014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
317-532
               

               
Cow position:
               
chr6:12091983-12091761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
110, 15
               

               
Conread position:
               
317-532
               

               
Cow position:
               
chr6:38771295-38771496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
317-532
               

               
Cow position:
               
chr6:48379604-48379386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
317-532
               

               
Cow position:
               
chr6:51121065-51120841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
317-535
               

               
Cow position:
               
chr6:2607614-2607836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
317-536
               

               
Cow position:
               
chr6:37395391-37395174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 15
               

               
Conread position:
               
317-537
               

               
Cow position:
               
chr6:41375782-41376000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
317-537
               

               
Cow position:
               
chr6:67950965-67951187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
317-541
               

               
Cow position:
               
chr6:6227016-6227247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
317-541
               

               
Cow position:
               
chr6:45388333-45388555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
15, 96
               

               
Conread position:
               
317-542
               

               
Cow position:
               
chr6:57089208-57089439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
52, 23
               

               
Conread position:
               
317-543
               

               
Cow position:
               
chr6:24781545-24781315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
112, 15
               

               
Conread position:
               
317-547
               

               
Cow position:
               
chr6:14166697-14166452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
317-547
               

               
Cow position:
               
chr6:43134929-43134701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
317-548
               

               
Cow position:
               
chr6:11246776-11247010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
317-552
               

               
Cow position:
               
chr6:55376168-55375928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
317-554
               

               
Cow position:
               
chr6:54127803-54127574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
317-554
               

               
Cow position:
               
chr6:62929506-62929745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
117, 14
               

               
Conread position:
               
317-555
               

               
Cow position:
               
chr6:611560-611791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
317-555
               

               
Cow position:
               
chr6:1429648-1429882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 130
               

               
Conread position:
               
317-555
               

               
Cow position:
               
chr6:12964862-12965107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
317-555
               

               
Cow position:
               
chr6:37246431-37246185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
111, 11
               

               
Conread position:
               
317-556
               

               
Cow position:
               
chr6:15300819-15300591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
317-556
               

               
Cow position:
               
chr6:35727853-35728103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 23
               

               
Conread position:
               
317-556
               

               
Cow position:
               
chr6:50810662-50810424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
317-559
               

               
Cow position:
               
chr6:52657957-52658205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
5, 16
               

               
Conread position:
               
317-562
               

               
Cow position:
               
chr6:1475356-1475591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
109, 9
               

               
Conread position:
               
317-562
               

               
Cow position:
               
chr6:27851697-27851448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
317-562
               

               
Cow position:
               
chr6:54208125-54207879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
317-565
               

               
Cow position:
               
chr6:3595800-3596054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
317-565
               

               
Cow position:
               
chr6:55417519-55417276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
317-565
               

               
Cow position:
               
chr6:68643999-68644253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
317-574
               

               
Cow position:
               
chr6:7539585-7539840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
318-532
               

               
Cow position:
               
chr6:65676254-65676469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
318-542
               

               
Cow position:
               
chr6:29239952-29240167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
112, 10
               

               
Conread position:
               
318-550
               

               
Cow position:
               
chr6:24468384-24468156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
108, 14
               

               
Conread position:
               
318-551
               

               
Cow position:
               
chr6:1103730-1103498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
12, 149
               

               
Conread position:
               
318-551
               

               
Cow position:
               
chr6:18080504-18080267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
108, 14
               

               
Conread position:
               
318-555
               

               
Cow position:
               
chr6:62078934-62079165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
109, 14
               

               
Conread position:
               
318-556
               

               
Cow position:
               
chr6:46274115-46273886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
143, 14
               

               
Conread position:
               
318-556
               

               
Cow position:
               
chr6:47355834-47356074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
110, 17
               

               
Conread position:
               
319-484
               

               
Cow position:
               
chr6:16191690-16191849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
319-532
               

               
Cow position:
               
chr6:8161682-8161460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
30, 15
               

               
Conread position:
               
319-555
               

               
Cow position:
               
chr6:47778887-47779125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
319-566
               

               
Cow position:
               
chr6:19045632-19045888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
320-556
               

               
Cow position:
               
chr6:6063282-6063043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
320-556
               

               
Cow position:
               
chr6:67574400-67574639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
321-475
               

               
Cow position:
               
chr6:23610956-23611108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
139, 11
               

               
Conread position:
               
321-532
               

               
Cow position:
               
chr6:5114035-5113822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 14
               

               
Conread position:
               
321-556
               

               
Cow position:
               
chr6:51530176-51529934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
321-558
               

               
Cow position:
               
chr6:54490719-54490495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
321-565
               

               
Cow position:
               
chr6:8966112-8966344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
321-576
               

               
Cow position:
               
chr6:20897173-20896918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
321-576
               

               
Cow position:
               
chr6:50269669-50269414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
321-589
               

               
Cow position:
               
chr6:55546161-55545884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
322-469
               

               
Cow position:
               
chr6:67806000-67805852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
104, 10
               

               
Conread position:
               
322-501
               

               
Cow position:
               
chr6:14063294-14063105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
76, 10
               

               
Conread position:
               
322-517
               

               
Cow position:
               
chr6:22525345-22525536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
97, 13
               

               
Conread position:
               
322-521
               

               
Cow position:
               
chr6:60859292-60859084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
322-523
               

               
Cow position:
               
chr6:24183546-24183340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
322-529
               

               
Cow position:
               
chr6:60740029-60740232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
105, 10
               

               
Conread position:
               
322-531
               

               
Cow position:
               
chr6:63720215-63720416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
104, 13
               

               
Conread position:
               
322-532
               

               
Cow position:
               
chr6:27219195-27219391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
106, 12
               

               
Conread position:
               
322-532
               

               
Cow position:
               
chr6:53460552-53460346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 10
               

               
Conread position:
               
322-532
               

               
Cow position:
               
chr6:57079438-57079651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 10
               

               
Conread position:
               
322-532
               

               
Cow position:
               
chr6:60118165-60118367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
322-532
               

               
Cow position:
               
chr6:61681092-61681303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
322-533
               

               
Cow position:
               
chr6:65535156-65534942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
100, 10
               

               
Conread position:
               
322-541
               

               
Cow position:
               
chr6:19225359-19225153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
322-541
               

               
Cow position:
               
chr6:56986633-56986414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
109, 10
               

               
Conread position:
               
322-547
               

               
Cow position:
               
chr6:22850241-22850012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
322-547
               

               
Cow position:
               
chr6:41014964-41014734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
104, 13
               

               
Conread position:
               
322-550
               

               
Cow position:
               
chr6:56850032-56850260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
322-552
               

               
Cow position:
               
chr6:63251908-63251671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
113, 10
               

               
Conread position:
               
322-553
               

               
Cow position:
               
chr6:32287653-32287877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
116, 92
               

               
Conread position:
               
322-553
               

               
Cow position:
               
chr6:48435850-48436077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
109, 9
               

               
Conread position:
               
322-554
               

               
Cow position:
               
chr6:35171620-35171861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
322-555
               

               
Cow position:
               
chr6:13565103-13565340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
108, 13
               

               
Conread position:
               
322-555
               

               
Cow position:
               
chr6:35181241-35181007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
322-555
               

               
Cow position:
               
chr6:53841491-53841255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
102, 13
               

               
Conread position:
               
322-556
               

               
Cow position:
               
chr6:23401977-23401746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
104, 10
               

               
Conread position:
               
322-556
               

               
Cow position:
               
chr6:27888366-27888598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
322-556
               

               
Cow position:
               
chr6:47305356-47305591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 10
               

               
Conread position:
               
322-556
               

               
Cow position:
               
chr6:56715832-56716057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 10
               

               
Conread position:
               
322-556
               

               
Cow position:
               
chr6:59603194-59602966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
104, 135
               

               
Conread position:
               
322-557
               

               
Cow position:
               
chr6:37149204-37149432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
322-561
               

               
Cow position:
               
chr6:48988445-48988693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
322-562
               

               
Cow position:
               
chr6:12623530-12623769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
322-562
               

               
Cow position:
               
chr6:53932834-53932591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
322-565
               

               
Cow position:
               
chr6:24110297-24110540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 10
               

               
Conread position:
               
322-565
               

               
Cow position:
               
chr6:24536517-24536270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
322-565
               

               
Cow position:
               
chr6:52592603-52592354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
322-565
               

               
Cow position:
               
chr6:67728390-67728635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
322-602
               

               
Cow position:
               
chr6:6229716-6229986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
209, 13
               

               
Conread position:
               
323-459
               

               
Cow position:
               
chr6:54573275-54573412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
323-523
               

               
Cow position:
               
chr6:38641513-38641710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
323-523
               

               
Cow position:
               
chr6:55205294-55205091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
323-523
               

               
Cow position:
               
chr6:55689041-55689245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
323-530
               

               
Cow position:
               
chr6:23110184-23109968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
323-541
               

               
Cow position:
               
chr6:4691959-4691728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
323-549
               

               
Cow position:
               
chr6:16700276-16700495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
139, 96
               

               
Conread position:
               
323-549
               

               
Cow position:
               
chr6:32126072-32126294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
104, 12
               

               
Conread position:
               
323-551
               

               
Cow position:
               
chr6:47245797-47246026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
323-554
               

               
Cow position:
               
chr6:66590096-66590318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
7, 88
               

               
Conread position:
               
323-555
               

               
Cow position:
               
chr6:55404922-55405168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
323-556
               

               
Cow position:
               
chr6:53138922-53138689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
323-558
               

               
Cow position:
               
chr6:50984236-50984475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
7, 128
               

               
Conread position:
               
323-559
               

               
Cow position:
               
chr6:50090658-50090903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
109, 9
               

               
Conread position:
               
323-572
               

               
Cow position:
               
chr6:581730-581470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 5
               

               
Conread position:
               
323-576
               

               
Cow position:
               
chr6:62683385-62683642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
324-512
               

               
Cow position:
               
chr6:31865115-31865300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
102, 8
               

               
Conread position:
               
324-556
               

               
Cow position:
               
chr6:8688831-8688596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
98, 139
               

               
Conread position:
               
324-556
               

               
Cow position:
               
chr6:58370774-58370996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
102, 68
               

               
Conread position:
               
327-459
               

               
Cow position:
               
chr6:54606872-54607004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
95, 78
               

               
Conread position:
               
327-575
               

               
Cow position:
               
chr6:55548516-55548266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
14, 172
               

               
Conread position:
               
328-582
               

               
Cow position:
               
chr6:51553160-51553419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
13, 221
               

               
Conread position:
               
329-477
               

               
Cow position:
               
chr6:21235063-21235214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
329-480
               

               
Cow position:
               
chr6:19131451-19131602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
87, 134
               

               
Conread position:
               
329-514
               

               
Cow position:
               
chr6:9832227-9832409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
101, 114
               

               
Conread position:
               
329-525
               

               
Cow position:
               
chr6:35990215-35990021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
52, 137
               

               
Conread position:
               
329-532
               

               
Cow position:
               
chr6:33150271-33150069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
329-549
               

               
Cow position:
               
chr6:55610216-55609986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
329-552
               

               
Cow position:
               
chr6:10399884-10399663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
133, 37
               

               
Conread position:
               
329-553
               

               
Cow position:
               
chr6:18599229-18599006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
329-554
               

               
Cow position:
               
chr6:18776271-18776493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
136, 90
               

               
Conread position:
               
329-555
               

               
Cow position:
               
chr6:10176281-10176052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 218
               

               
Conread position:
               
329-556
               

               
Cow position:
               
chr6:12338014-12338239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
121, 89
               

               
Conread position:
               
329-558
               

               
Cow position:
               
chr6:22215455-22215209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 51
               

               
Conread position:
               
329-558
               

               
Cow position:
               
chr6:61631588-61631353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
93, 118
               

               
Conread position:
               
329-565
               

               
Cow position:
               
chr6:66947797-66947563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
99, 37
               

               
Conread position:
               
329-566
               

               
Cow position:
               
chr6:44867522-44867283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
99, 133
               

               
Conread position:
               
329-576
               

               
Cow position:
               
chr6:3952539-3952789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
99, 234
               

               
Conread position:
               
329-580
               

               
Cow position:
               
chr6:6060551-6060300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
97, 135
               

               
Conread position:
               
330-478
               

               
Cow position:
               
chr6:54867539-54867691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
330-480
               

               
Cow position:
               
chr6:21066862-21066709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
330-542
               

               
Cow position:
               
chr6:45094588-45094813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
330-553
               

               
Cow position:
               
chr6:50771337-50771110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
330-555
               

               
Cow position:
               
chr6:3464317-3464544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
98, 76
               

               
Conread position:
               
330-555
               

               
Cow position:
               
chr6:66259751-66259984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
96, 222
               

               
Conread position:
               
330-559
               

               
Cow position:
               
chr6:53529548-53529786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
46, 60
               

               
Conread position:
               
330-563
               

               
Cow position:
               
chr6:30502102-30501864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
96, 44
               

               
Conread position:
               
330-569
               

               
Cow position:
               
chr6:36809186-36808936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
330-576
               

               
Cow position:
               
chr6:8365833-8366083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
330-576
               

               
Cow position:
               
chr6:21715070-21715319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
330-581
               

               
Cow position:
               
chr6:22332377-22332121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
330-584
               

               
Cow position:
               
chr6:57115097-57115361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 207
               

               
Conread position:
               
330-586
               

               
Cow position:
               
chr6:27239984-27239725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
98, 241
               

               
Conread position:
               
331-531
               

               
Cow position:
               
chr6:15305594-15305795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
95, 52
               

               
Conread position:
               
331-532
               

               
Cow position:
               
chr6:10039746-10039951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
331-532
               

               
Cow position:
               
chr6:28089025-28088822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
95, 119
               

               
Conread position:
               
331-532
               

               
Cow position:
               
chr6:56799876-56799666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
331-542
               

               
Cow position:
               
chr6:17068625-17068415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
95, 132
               

               
Conread position:
               
331-549
               

               
Cow position:
               
chr6:21470406-21470190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 134
               

               
Conread position:
               
331-571
               

               
Cow position:
               
chr6:2078792-2078545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
95, 151
               

               
Conread position:
               
332-521
               

               
Cow position:
               
chr6:51666314-51666121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
11, 49
               

               
Conread position:
               
332-523
               

               
Cow position:
               
chr6:48282015-48282211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
332-523
               

               
Cow position:
               
chr6:62811573-62811766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
11, 98
               

               
Conread position:
               
332-528
               

               
Cow position:
               
chr6:61556850-61557053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
332-530
               

               
Cow position:
               
chr6:42567515-42567719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
332-532
               

               
Cow position:
               
chr6:22158192-22157988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
332-532
               

               
Cow position:
               
chr6:66839222-66839418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
94, 29
               

               
Conread position:
               
332-552
               

               
Cow position:
               
chr6:47648213-47647987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
332-556
               

               
Cow position:
               
chr6:54831500-54831727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
96, 118
               

               
Conread position:
               
332-562
               

               
Cow position:
               
chr6:28851996-28852229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
11, 98
               

               
Conread position:
               
332-565
               

               
Cow position:
               
chr6:6227715-6227479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
11, 198
               

               
Conread position:
               
332-565
               

               
Cow position:
               
chr6:41441726-41441486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
332-576
               

               
Cow position:
               
chr6:94173-93932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
12, 134
               

               
Conread position:
               
332-576
               

               
Cow position:
               
chr6:32043870-32044118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 207
               

               
Conread position:
               
333-553
               

               
Cow position:
               
chr6:6201449-6201678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
97, 220
               

               
Conread position:
               
333-554
               

               
Cow position:
               
chr6:53546060-53546276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
93, 130
               

               
Conread position:
               
333-563
               

               
Cow position:
               
chr6:59620678-59620911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
334-532
               

               
Cow position:
               
chr6:7128377-7128179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
93, 112
               

               
Conread position:
               
334-566
               

               
Cow position:
               
chr6:55054062-55054297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 96
               

               
Conread position:
               
335-522
               

               
Cow position:
               
chr6:67538303-67538114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 31
               

               
Conread position:
               
335-523
               

               
Cow position:
               
chr6:36920947-36920759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
108, 38
               

               
Conread position:
               
335-529
               

               
Cow position:
               
chr6:1871172-1870975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
7, 123
               

               
Conread position:
               
335-532
               

               
Cow position:
               
chr6:38853632-38853431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
335-551
               

               
Cow position:
               
chr6:29485109-29485327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 132
               

               
Conread position:
               
335-552
               

               
Cow position:
               
chr6:36643465-36643242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
91, 54
               

               
Conread position:
               
335-556
               

               
Cow position:
               
chr6:1090607-1090838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
335-556
               

               
Cow position:
               
chr6:13687785-13687568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
335-557
               

               
Cow position:
               
chr6:24339309-24339539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
336-558
               

               
Cow position:
               
chr6:37827919-37827696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
92, 73
               

               
Conread position:
               
340-517
               

               
Cow position:
               
chr6:22253931-22253752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
81, 71
               

               
Conread position:
               
340-529
               

               
Cow position:
               
chr6:57295761-57295954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
340-530
               

               
Cow position:
               
chr6:8369456-8369647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
88, 47
               

               
Conread position:
               
340-532
               

               
Cow position:
               
chr6:34475529-34475333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
340-532
               

               
Cow position:
               
chr6:54647472-54647274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 184
               

               
Conread position:
               
340-541
               

               
Cow position:
               
chr6:39414851-39415058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 143
               

               
Conread position:
               
340-551
               

               
Cow position:
               
chr6:19755051-19754834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
340-556
               

               
Cow position:
               
chr6:18955043-18954837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 6
               

               
Conread position:
               
340-566
               

               
Cow position:
               
chr6:33509821-33510054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
88, 47
               

               
Conread position:
               
340-603
               

               
Cow position:
               
chr6:16380576-16380840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
88, 187
               

               
Conread position:
               
341-532
               

               
Cow position:
               
chr6:22204994-22204799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
341-552
               

               
Cow position:
               
chr6:53024771-53024566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
85, 110
               

               
Conread position:
               
341-553
               

               
Cow position:
               
chr6:21184190-21183978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
121, 131
               

               
Conread position:
               
341-562
               

               
Cow position:
               
chr6:34569440-34569671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
90, 105
               

               
Conread position:
               
341-562
               

               
Cow position:
               
chr6:64380468-64380690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 85
               

               
Conread position:
               
341-565
               

               
Cow position:
               
chr6:22876898-22876671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 206
               

               
Conread position:
               
341-565
               

               
Cow position:
               
chr6:62707694-62707467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
93, 207
               

               
Conread position:
               
342-509
               

               
Cow position:
               
chr6:59301756-59301581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
342-549
               

               
Cow position:
               
chr6:3936818-3937029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
343-555
               

               
Cow position:
               
chr6:30825731-30825529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
83, 40
               

               
Conread position:
               
343-564
               

               
Cow position:
               
chr6:16065810-16065590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 46
               

               
Conread position:
               
345-532
               

               
Cow position:
               
chr6:56582024-56581829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
345-558
               

               
Cow position:
               
chr6:50883641-50883430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 119
               

               
Conread position:
               
345-572
               

               
Cow position:
               
chr6:29853028-29852790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
346-529
               

               
Cow position:
               
chr6:36537323-36537141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
76, 118
               

               
Conread position:
               
346-585
               

               
Cow position:
               
chr6:45921176-45920947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
82, 118
               

               
Conread position:
               
347-540
               

               
Cow position:
               
chr6:15058415-15058607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
79, 136
               

               
Conread position:
               
347-553
               

               
Cow position:
               
chr6:47173989-47173791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 104
               

               
Conread position:
               
347-555
               

               
Cow position:
               
chr6:24514507-24514286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
348-532
               

               
Cow position:
               
chr6:69374793-69374609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
113, 73
               

               
Conread position:
               
348-548
               

               
Cow position:
               
chr6:20364425-20364209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
348-555
               

               
Cow position:
               
chr6:24491068-24491279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
51, 124
               

               
Conread position:
               
348-558
               

               
Cow position:
               
chr6:53711442-53711658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
349-532
               

               
Cow position:
               
chr6:14471404-14471590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
349-532
               

               
Cow position:
               
chr6:59015529-59015354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
168, 35
               

               
Conread position:
               
349-535
               

               
Cow position:
               
chr6:57072463-57072652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
349-553
               

               
Cow position:
               
chr6:26638428-26638639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
349-555
               

               
Cow position:
               
chr6:62724596-62724805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
82, 198
               

               
Conread position:
               
349-556
               

               
Cow position:
               
chr6:68345191-68344985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
108, 70
               

               
Conread position:
               
349-565
               

               
Cow position:
               
chr6:19809976-19810200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
349-566
               

               
Cow position:
               
chr6:48157355-48157127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
349-571
               

               
Cow position:
               
chr6:23058252-23058478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
73, 198
               

               
Conread position:
               
349-576
               

               
Cow position:
               
chr6:56061701-56061930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
79, 198
               

               
Conread position:
               
349-593
               

               
Cow position:
               
chr6:38550587-38550335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 76
               

               
Conread position:
               
350-532
               

               
Cow position:
               
chr6:6614662-6614850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
350-532
               

               
Cow position:
               
chr6:40029938-40030123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
350-532
               

               
Cow position:
               
chr6:67633518-67633335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
78, 59
               

               
Conread position:
               
350-554
               

               
Cow position:
               
chr6:20075835-20076044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 101
               

               
Conread position:
               
350-555
               

               
Cow position:
               
chr6:24776180-24776390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
78, 175
               

               
Conread position:
               
350-556
               

               
Cow position:
               
chr6:41657309-41657519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
76, 123
               

               
Conread position:
               
350-556
               

               
Cow position:
               
chr6:55044600-55044386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
84, 170
               

               
Conread position:
               
350-580
               

               
Cow position:
               
chr6:62805682-62805913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
9, 200
               

               
Conread position:
               
350-584
               

               
Cow position:
               
chr6:52025330-52025075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 236
               

               
Conread position:
               
351-479
               

               
Cow position:
               
chr6:62478827-62478695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
351-532
               

               
Cow position:
               
chr6:13742031-13742212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
77, 58
               

               
Conread position:
               
351-532
               

               
Cow position:
               
chr6:19563441-19563254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
351-543
               

               
Cow position:
               
chr6:5445709-5445909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
351-547
               

               
Cow position:
               
chr6:36225151-36225350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
351-554
               

               
Cow position:
               
chr6:47150861-47151065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
11, 123
               

               
Conread position:
               
351-557
               

               
Cow position:
               
chr6:46206340-46206546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 43
               

               
Conread position:
               
351-565
               

               
Cow position:
               
chr6:11867237-11867021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
83, 197
               

               
Conread position:
               
351-580
               

               
Cow position:
               
chr6:15974477-15974246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
352-532
               

               
Cow position:
               
chr6:2757826-2758007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 107
               

               
Conread position:
               
353-530
               

               
Cow position:
               
chr6:25773171-25772996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
353-555
               

               
Cow position:
               
chr6:30983564-30983762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
115, 78
               

               
Conread position:
               
353-556
               

               
Cow position:
               
chr6:54622919-54622714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 6
               

               
Conread position:
               
354-518
               

               
Cow position:
               
chr6:49173512-49173344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
354-519
               

               
Cow position:
               
chr6:17954198-17954035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
107, 57
               

               
Conread position:
               
354-519
               

               
Cow position:
               
chr6:51542945-51543111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
354-522
               

               
Cow position:
               
chr6:10324845-10324673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
354-532
               

               
Cow position:
               
chr6:8187144-8186962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
354-553
               

               
Cow position:
               
chr6:58363666-58363464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 193
               

               
Conread position:
               
354-555
               

               
Cow position:
               
chr6:10605687-10605892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
71, 194
               

               
Conread position:
               
354-569
               

               
Cow position:
               
chr6:45980140-45979924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 7
               

               
Conread position:
               
355-551
               

               
Cow position:
               
chr6:34076209-34076412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
62, 11
               

               
Conread position:
               
355-562
               

               
Cow position:
               
chr6:56022508-56022298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
73, 192
               

               
Conread position:
               
357-530
               

               
Cow position:
               
chr6:48792826-48793003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
357-555
               

               
Cow position:
               
chr6:33290018-33290218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
358-479
               

               
Cow position:
               
chr6:35654500-35654377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
358-532
               

               
Cow position:
               
chr6:61644809-61644631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
358-552
               

               
Cow position:
               
chr6:39358291-39358098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
69, 110
               

               
Conread position:
               
358-559
               

               
Cow position:
               
chr6:16270950-16270747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
78, 19
               

               
Conread position:
               
359-480
               

               
Cow position:
               
chr6:35702294-35702172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
69, 120
               

               
Conread position:
               
359-502
               

               
Cow position:
               
chr6:58076444-58076591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
359-529
               

               
Cow position:
               
chr6:26054854-26054678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
359-529
               

               
Cow position:
               
chr6:59546113-59546287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
359-530
               

               
Cow position:
               
chr6:17172875-17173051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
359-532
               

               
Cow position:
               
chr6:35985086-35984909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
359-532
               

               
Cow position:
               
chr6:54820882-54821059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
359-542
               

               
Cow position:
               
chr6:633202-633008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
359-542
               

               
Cow position:
               
chr6:34722054-34721876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
154, 60
               

               
Conread position:
               
359-547
               

               
Cow position:
               
chr6:57248566-57248757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
359-548
               

               
Cow position:
               
chr6:27636365-27636561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
359-554
               

               
Cow position:
               
chr6:48893881-48893682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
359-556
               

               
Cow position:
               
chr6:8315433-8315640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
359-556
               

               
Cow position:
               
chr6:36163794-36164000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
359-557
               

               
Cow position:
               
chr6:45160007-45159805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
359-565
               

               
Cow position:
               
chr6:55517926-55518132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
69, 115
               

               
Conread position:
               
359-566
               

               
Cow position:
               
chr6:16411665-16411874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
359-570
               

               
Cow position:
               
chr6:144807-145013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
105, 30
               

               
Conread position:
               
360-523
               

               
Cow position:
               
chr6:50020542-50020707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
68, 46
               

               
Conread position:
               
360-559
               

               
Cow position:
               
chr6:15172617-15172812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 96
               

               
Conread position:
               
360-561
               

               
Cow position:
               
chr6:48448876-48449075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 65
               

               
Conread position:
               
361-531
               

               
Cow position:
               
chr6:60186610-60186430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
361-532
               

               
Cow position:
               
chr6:33960597-33960423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
64, 76
               

               
Conread position:
               
361-532
               

               
Cow position:
               
chr6:34380762-34380591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 53
               

               
Conread position:
               
361-539
               

               
Cow position:
               
chr6:46161154-46160971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
361-547
               

               
Cow position:
               
chr6:224689-224498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 126
               

               
Conread position:
               
361-553
               

               
Cow position:
               
chr6:53765838-53765647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
92, 58
               

               
Conread position:
               
361-553
               

               
Cow position:
               
chr6:57167501-57167304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
361-558
               

               
Cow position:
               
chr6:6195050-6194851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
361-563
               

               
Cow position:
               
chr6:31471127-31471334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
9, 179
               

               
Conread position:
               
361-577
               

               
Cow position:
               
chr6:67290604-67290383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
362-532
               

               
Cow position:
               
chr6:57299811-57299995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
362-549
               

               
Cow position:
               
chr6:44544095-44543906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
66, 184
               

               
Conread position:
               
362-549
               

               
Cow position:
               
chr6:57467650-57467841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
73, 68
               

               
Conread position:
               
362-554
               

               
Cow position:
               
chr6:44540861-44541050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
60, 101
               

               
Conread position:
               
362-556
               

               
Cow position:
               
chr6:47642798-47642998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
104, 40
               

               
Conread position:
               
362-569
               

               
Cow position:
               
chr6:19722660-19722869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
73, 67
               

               
Conread position:
               
363-509
               

               
Cow position:
               
chr6:6850376-6850526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
363-532
               

               
Cow position:
               
chr6:19052671-19052844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
363-556
               

               
Cow position:
               
chr6:68246779-68246582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
363-561
               

               
Cow position:
               
chr6:59297107-59297300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
181, 63
               

               
Conread position:
               
363-575
               

               
Cow position:
               
chr6:54679582-54679797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 186
               

               
Conread position:
               
364-532
               

               
Cow position:
               
chr6:6996843-6996674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
53, 71
               

               
Conread position:
               
364-555
               

               
Cow position:
               
chr6:1173901-1173699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
364-557
               

               
Cow position:
               
chr6:19936514-19936312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
366-516
               

               
Cow position:
               
chr6:30895934-30895781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
366-532
               

               
Cow position:
               
chr6:32006397-32006231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 107
               

               
Conread position:
               
366-532
               

               
Cow position:
               
chr6:50682240-50682074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
62, 36
               

               
Conread position:
               
366-542
               

               
Cow position:
               
chr6:55014936-55015118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 156
               

               
Conread position:
               
366-553
               

               
Cow position:
               
chr6:58697574-58697384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
56, 181
               

               
Conread position:
               
366-554
               

               
Cow position:
               
chr6:66293542-66293735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
366-556
               

               
Cow position:
               
chr6:33302452-33302651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
366-557
               

               
Cow position:
               
chr6:18440420-18440222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
366-559
               

               
Cow position:
               
chr6:14263833-14263638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
366-560
               

               
Cow position:
               
chr6:36938925-36939127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
366-563
               

               
Cow position:
               
chr6:28562111-28561909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
61, 75
               

               
Conread position:
               
366-565
               

               
Cow position:
               
chr6:49685876-49686076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
366-573
               

               
Cow position:
               
chr6:32336088-32336302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
19, 177
               

               
Conread position:
               
366-595
               

               
Cow position:
               
chr6:21052392-21052157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
367-551
               

               
Cow position:
               
chr6:17404619-17404813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
367-552
               

               
Cow position:
               
chr6:34224137-34224325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
368-550
               

               
Cow position:
               
chr6:26408445-26408259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
368-561
               

               
Cow position:
               
chr6:60347568-60347371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
369-530
               

               
Cow position:
               
chr6:67543997-67543832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
369-531
               

               
Cow position:
               
chr6:63012389-63012554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 77
               

               
Conread position:
               
369-547
               

               
Cow position:
               
chr6:55919874-55919692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
369-547
               

               
Cow position:
               
chr6:63020403-63020582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 60
               

               
Conread position:
               
369-548
               

               
Cow position:
               
chr6:34423398-34423219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 96
               

               
Conread position:
               
369-554
               

               
Cow position:
               
chr6:54889660-54889856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
369-559
               

               
Cow position:
               
chr6:53811643-53811838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
370-525
               

               
Cow position:
               
chr6:24651919-24651762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
370-532
               

               
Cow position:
               
chr6:43906622-43906456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
370-532
               

               
Cow position:
               
chr6:47022622-47022784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
52, 94
               

               
Conread position:
               
371-550
               

               
Cow position:
               
chr6:6547445-6547271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
57, 92
               

               
Conread position:
               
371-556
               

               
Cow position:
               
chr6:18152454-18152642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
12, 93
               

               
Conread position:
               
374-530
               

               
Cow position:
               
chr6:39356179-39356337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
54, 133
               

               
Conread position:
               
374-532
               

               
Cow position:
               
chr6:31847175-31847019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
57, 91
               

               
Conread position:
               
374-549
               

               
Cow position:
               
chr6:48278823-48278653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 89
               

               
Conread position:
               
374-563
               

               
Cow position:
               
chr6:25615029-25614834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
374-569
               

               
Cow position:
               
chr6:30123104-30122902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
375-555
               

               
Cow position:
               
chr6:14150313-14150134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 137
               

               
Conread position:
               
375-555
               

               
Cow position:
               
chr6:24903512-24903327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
376-554
               

               
Cow position:
               
chr6:16357504-16357688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
376-555
               

               
Cow position:
               
chr6:62224489-62224668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
46, 121
               

               
Conread position:
               
376-567
               

               
Cow position:
               
chr6:4323397-4323582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
378-561
               

               
Cow position:
               
chr6:10225586-10225392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 78
               

               
Conread position:
               
380-555
               

               
Cow position:
               
chr6:16387634-16387457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
48, 7
               

               
Conread position:
               
380-588
               

               
Cow position:
               
chr6:55060934-55061151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
48, 196
               

               
Conread position:
               
381-529
               

               
Cow position:
               
chr6:4760064-4760215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
382-565
               

               
Cow position:
               
chr6:53511563-53511373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 72
               

               
Conread position:
               
383-556
               

               
Cow position:
               
chr6:7291390-7291560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
384-529
               

               
Cow position:
               
chr6:53732057-53732207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
384-532
               

               
Cow position:
               
chr6:16502970-16502817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
384-556
               

               
Cow position:
               
chr6:16137695-16137518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
384-556
               

               
Cow position:
               
chr6:34463512-34463341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
386-554
               

               
Cow position:
               
chr6:54840430-54840254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
40, 166
               

               
Conread position:
               
387-553
               

               
Cow position:
               
chr6:10163744-10163921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
387-554
               

               
Cow position:
               
chr6:21175416-21175581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 79
               

               
Conread position:
               
387-555
               

               
Cow position:
               
chr6:14152812-14152644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 120
               

               
Conread position:
               
387-583
               

               
Cow position:
               
chr6:16627813-16628014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
387-586
               

               
Cow position:
               
chr6:29851447-29851647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
41, 76
               

               
Conread position:
               
389-567
               

               
Cow position:
               
chr6:54406719-54406540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 74
               

               
Conread position:
               
391-542
               

               
Cow position:
               
chr6:40833932-40833785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
37, 74
               

               
Conread position:
               
392-530
               

               
Cow position:
               
chr6:45471506-45471363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
392-532
               

               
Cow position:
               
chr6:47450838-47450694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
392-554
               

               
Cow position:
               
chr6:47790716-47790544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
392-565
               

               
Cow position:
               
chr6:44474643-44474818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 155
               

               
Conread position:
               
393-544
               

               
Cow position:
               
chr6:13097316-13097161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
393-587
               

               
Cow position:
               
chr6:59101237-59101039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
29, 186
               

               
Conread position:
               
394-555
               

               
Cow position:
               
chr6:31928722-31928886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 153
               

               
Conread position:
               
394-562
               

               
Cow position:
               
chr6:12099601-12099435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 72
               

               
Conread position:
               
394-575
               

               
Cow position:
               
chr6:59687727-59687542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
395-535
               

               
Cow position:
               
chr6:4049066-4048922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
396-532
               

               
Cow position:
               
chr6:26764740-26764597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
396-532
               

               
Cow position:
               
chr6:55945876-55945731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
396-550
               

               
Cow position:
               
chr6:50445030-50444872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
397-562
               

               
Cow position:
               
chr6:49825005-49824839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
29, 149
               

               
Conread position:
               
399-532
               

               
Cow position:
               
chr6:54828232-54828095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
399-532
               

               
Cow position:
               
chr6:57935482-57935351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
399-541
               

               
Cow position:
               
chr6:67374586-67374438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
399-555
               

               
Cow position:
               
chr6:16016124-16016282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
400-549
               

               
Cow position:
               
chr6:15111750-15111593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
402-554
               

               
Cow position:
               
chr6:6117551-6117401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
404-552
               

               
Cow position:
               
chr6:30688417-30688267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 135
               

               
Conread position:
               
405-551
               

               
Cow position:
               
chr6:29496089-29496236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
406-551
               

               
Cow position:
               
chr6:55196310-55196460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
408-563
               

               
Cow position:
               
chr6:60088377-60088217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 49
               

               
Conread position:
               
409-572
               

               
Cow position:
               
chr6:23381568-23381402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 138
               

               
Conread position:
               
411-535
               

               
Cow position:
               
chr6:57143594-57143466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
425-532
               

               
Cow position:
               
chr6:65831479-65831588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
425-550
               

               
Cow position:
               
chr6:60673953-60674074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
430-555
               

               
Cow position:
               
chr6:59759294-59759417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
430-565
               

               
Cow position:
               
chr6:51019273-51019407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 5
               

               
Conread position:
               
431-565
               

               
Cow position:
               
chr6:456827-456692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
31, 91
               

               
Conread position:
               
435-547
               

               
Cow position:
               
chr6:16738741-16738855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
436-532
               

               
Cow position:
               
chr6:36267126-36267225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
439-556
               

               
Cow position:
               
chr6:54344231-54344351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
439-572
               

               
Cow position:
               
chr6:11894874-11894736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
440-587
               

               
Cow position:
               
chr6:51648958-51649105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 105
               

               
Conread position:
               
444-556
               

               
Cow position:
               
chr6:12711655-12711537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 0
               
Show alignments to all cow chromosomes.