Cow genome map
| Conread name: | Utr1-UTR01H020100 |
| Conread position: | 1-149 |
| Cow position: | chr11:64046331-64046478 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-157 |
| Cow position: | chr11:45111949-45112106 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 83 |
| Conread position: | 1-183 |
| Cow position: | chr11:62229520-62229711 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 94, 117 |
| Conread position: | 1-210 |
| Cow position: | chr11:25866605-25866397 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 97, 69 |
| Conread position: | 1-274 |
| Cow position: | chr11:32480845-32480558 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-312 |
| Cow position: | chr11:76373883-76373562 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 120 |
| Conread position: | 1-391 |
| Cow position: | chr11:36743848-36743440 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 244 |
| Conread position: | 1-399 |
| Cow position: | chr11:64081750-64081336 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-402 |
| Cow position: | chr11:33194226-33193810 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-406 |
| Cow position: | chr11:21443629-21444029 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 109 |
| Conread position: | 1-419 |
| Cow position: | chr11:73477641-73478074 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-448 |
| Cow position: | chr11:71982191-71981739 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 121 |
| Conread position: | 1-475 |
| Cow position: | chr11:15983958-15984456 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-477 |
| Cow position: | chr11:9216745-9216266 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 81 |
| Conread position: | 1-506 |
| Cow position: | chr11:1495757-1495253 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 245 |
| Conread position: | 1-651 |
| Cow position: | chr11:27058779-27058137 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 403 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 116, 86 |
| Conread position: | 1-697 |
| Cow position: | chr11:3493327-3494022 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 245 |
| Conread position: | 1-697 |
| Cow position: | chr11:9734339-9733644 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 60 |
| Conread position: | 1-697 |
| Cow position: | chr11:17107354-17106649 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 241 |
| Conread position: | 1-697 |
| Cow position: | chr11:17546500-17547196 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 172 |
| Conread position: | 1-697 |
| Cow position: | chr11:19063740-19063039 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-697 |
| Cow position: | chr11:20733909-20733205 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 245 |
| Conread position: | 1-697 |
| Cow position: | chr11:28229425-28228732 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 245 |
| Conread position: | 1-697 |
| Cow position: | chr11:53286832-53286134 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-697 |
| Cow position: | chr11:53431726-53431008 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 124 |
| Conread position: | 1-697 |
| Cow position: | chr11:57627705-57627019 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 121 |
| Conread position: | 1-697 |
| Cow position: | chr11:61400727-61400048 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-697 |
| Cow position: | chr11:67450825-67451526 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 245 |
| Conread position: | 1-697 |
| Cow position: | chr11:67846238-67845537 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 232 |
| Conread position: | 1-705 |
| Cow position: | chr11:9156823-9156109 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 124 |
| Conread position: | 1-705 |
| Cow position: | chr11:24336857-24336177 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 185 |
| Conread position: | 1-705 |
| Cow position: | chr11:26070711-26070008 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 121 |
| Conread position: | 1-705 |
| Cow position: | chr11:29668276-29667565 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 125 |
| Conread position: | 1-705 |
| Cow position: | chr11:38835102-38834403 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 124 |
| Conread position: | 1-705 |
| Cow position: | chr11:40775666-40774957 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 24 |
| Conread position: | 1-705 |
| Cow position: | chr11:58134727-58135435 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 9 |
| Conread position: | 2-695 |
| Cow position: | chr11:37476664-37475950 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 64 |
| Conread position: | 2-697 |
| Cow position: | chr11:63655003-63654301 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 242 |
| Conread position: | 3-119 |
| Cow position: | chr11:38219937-38219821 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 95, 68 |
| Conread position: | 3-319 |
| Cow position: | chr11:4027225-4026896 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 121 |
| Conread position: | 3-697 |
| Cow position: | chr11:28054274-28053580 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 120 |
| Conread position: | 3-697 |
| Cow position: | chr11:85393470-85392794 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 207 |
| Conread position: | 3-701 |
| Cow position: | chr11:24393657-24394353 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 35 |
| Conread position: | 3-701 |
| Cow position: | chr11:44156911-44156211 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 67 |
| Conread position: | 3-701 |
| Cow position: | chr11:71329927-71330632 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 3-704 |
| Cow position: | chr11:31926507-31927193 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 105 |
| Conread position: | 3-705 |
| Cow position: | chr11:4270052-4269360 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 128 |
| Conread position: | 3-705 |
| Cow position: | chr11:10847785-10848493 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-705 |
| Cow position: | chr11:11988447-11989174 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 48 |
| Conread position: | 3-705 |
| Cow position: | chr11:12358082-12357370 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-705 |
| Cow position: | chr11:19102161-19101452 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-705 |
| Cow position: | chr11:26124592-26123889 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 3-705 |
| Cow position: | chr11:41170361-41169655 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 119 |
| Conread position: | 3-705 |
| Cow position: | chr11:43514298-43513594 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 448 |
| Conread position: | 3-705 |
| Cow position: | chr11:44252134-44252844 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 4-492 |
| Cow position: | chr11:12093902-12094396 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 244 |
| Conread position: | 5-702 |
| Cow position: | chr11:47759941-47759242 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 86 |
| Conread position: | 8-194 |
| Cow position: | chr11:44491935-44491735 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 87, 117 |
| Conread position: | 8-703 |
| Cow position: | chr11:4034997-4034310 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 114 |
| Conread position: | 14-697 |
| Cow position: | chr11:52419736-52420436 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 231 |
| Conread position: | 16-157 |
| Cow position: | chr11:47738668-47738526 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 107 |
| Conread position: | 74-658 |
| Cow position: | chr11:31861313-31861896 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 90-705 |
| Cow position: | chr11:9601911-9601286 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 35 |
| Conread position: | 145-705 |
| Cow position: | chr11:44582845-44582301 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 231 |
| Conread position: | 204-565 |
| Cow position: | chr11:7116999-7117352 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 385-709 |
| Cow position: | chr11:75554272-75553955 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 31 |
| Conread position: | 402-697 |
| Cow position: | chr11:73134020-73134323 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 424-705 |
| Cow position: | chr11:76373235-76372956 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 38, 97 |
| Conread position: | 429-705 |
| Cow position: | chr11:3855978-3856253 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 33, 111 |
Show alignments to all cow chromosomes.