Cow genome map
| Conread name: | Utr1-UTR01H020100 |
| Conread position: | 1-141 |
| Cow position: | chr15:1882229-1882088 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-157 |
| Cow position: | chr15:789295-789138 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-209 |
| Cow position: | chr15:2012329-2012548 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 120, 95 |
| Conread position: | 1-212 |
| Cow position: | chr15:32711370-32711595 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 97, 122 |
| Conread position: | 1-270 |
| Cow position: | chr15:40106141-40106400 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 94, 67 |
| Conread position: | 1-306 |
| Cow position: | chr15:368894-368571 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 21 |
| Conread position: | 1-376 |
| Cow position: | chr15:1518876-1518487 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 155 |
| Conread position: | 1-486 |
| Cow position: | chr15:2762953-2763440 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 36 |
| Conread position: | 1-487 |
| Cow position: | chr15:7934606-7935112 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 247 |
| Conread position: | 1-506 |
| Cow position: | chr15:9912966-9913488 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 121 |
| Conread position: | 1-568 |
| Cow position: | chr15:18267710-18267129 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-605 |
| Cow position: | chr15:6471642-6471030 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 82 |
| Conread position: | 1-695 |
| Cow position: | chr15:28489871-28489177 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 230 |
| Conread position: | 1-696 |
| Cow position: | chr15:36625990-36625289 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 52 |
| Conread position: | 1-697 |
| Cow position: | chr15:444882-445589 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 244 |
| Conread position: | 1-697 |
| Cow position: | chr15:1772775-1773477 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 155 |
| Conread position: | 1-697 |
| Cow position: | chr15:1782500-1783216 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-697 |
| Cow position: | chr15:2647377-2646676 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 104 |
| Conread position: | 1-697 |
| Cow position: | chr15:4142541-4141839 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-697 |
| Cow position: | chr15:11597730-11597037 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-697 |
| Cow position: | chr15:20749667-20750370 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-697 |
| Cow position: | chr15:50147344-50148054 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 244 |
| Conread position: | 1-701 |
| Cow position: | chr15:6079030-6079728 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 43 |
| Conread position: | 1-705 |
| Cow position: | chr15:579718-580412 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 1-705 |
| Cow position: | chr15:4812877-4813583 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 245 |
| Conread position: | 1-705 |
| Cow position: | chr15:7260877-7261586 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 50 |
| Conread position: | 1-705 |
| Cow position: | chr15:9430218-9430921 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 77 |
| Conread position: | 1-706 |
| Cow position: | chr15:4671712-4672427 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 60 |
| Conread position: | 1-708 |
| Cow position: | chr15:4651642-4652360 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 71 |
| Conread position: | 2-208 |
| Cow position: | chr15:35735857-35736077 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 121 |
| Conread position: | 2-231 |
| Cow position: | chr15:7893956-7893718 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 23, 123 |
| Conread position: | 2-506 |
| Cow position: | chr15:1834192-1833658 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 168 |
| Conread position: | 2-568 |
| Cow position: | chr15:32693849-32694410 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 30 |
| Conread position: | 3-151 |
| Cow position: | chr15:38980949-38981098 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-157 |
| Cow position: | chr15:6761160-6761005 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-257 |
| Cow position: | chr15:36971196-36971464 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 92, 241 |
| Conread position: | 3-402 |
| Cow position: | chr15:32494105-32493693 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 237 |
| Conread position: | 3-405 |
| Cow position: | chr15:53136941-53136524 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 242 |
| Conread position: | 3-495 |
| Cow position: | chr15:17079926-17079433 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 237 |
| Conread position: | 3-658 |
| Cow position: | chr15:524578-523930 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-681 |
| Cow position: | chr15:3889158-3889843 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 242 |
| Conread position: | 3-696 |
| Cow position: | chr15:50123663-50122955 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 80 |
| Conread position: | 3-697 |
| Cow position: | chr15:4196741-4197440 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 241 |
| Conread position: | 3-697 |
| Cow position: | chr15:15346835-15346134 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 124 |
| Conread position: | 3-701 |
| Cow position: | chr15:7837528-7838246 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 3-701 |
| Cow position: | chr15:24295379-24296069 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 118 |
| Conread position: | 3-701 |
| Cow position: | chr15:31359166-31359854 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 67 |
| Conread position: | 3-705 |
| Cow position: | chr15:8099756-8100455 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 118 |
| Conread position: | 3-705 |
| Cow position: | chr15:18332548-18331851 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 187 |
| Conread position: | 3-705 |
| Cow position: | chr15:18576995-18577699 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 237 |
| Conread position: | 3-705 |
| Cow position: | chr15:19737771-19737074 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 243 |
| Conread position: | 3-706 |
| Cow position: | chr15:6155664-6154945 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 4-705 |
| Cow position: | chr15:14582078-14581375 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 118 |
| Conread position: | 5-398 |
| Cow position: | chr15:44829081-44829490 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 119 |
| Conread position: | 5-698 |
| Cow position: | chr15:2076931-2077638 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 118 |
| Conread position: | 5-705 |
| Cow position: | chr15:21665464-21664756 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 118 |
| Conread position: | 8-621 |
| Cow position: | chr15:13674800-13675401 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 64 |
| Conread position: | 8-705 |
| Cow position: | chr15:7545164-7545833 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 24 |
| Conread position: | 10-705 |
| Cow position: | chr15:6553535-6552835 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 230 |
| Conread position: | 13-705 |
| Cow position: | chr15:35647379-35646693 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 235 |
| Conread position: | 14-248 |
| Cow position: | chr15:31862272-31862024 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 81, 109 |
| Conread position: | 15-704 |
| Cow position: | chr15:7965665-7964976 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 119 |
| Conread position: | 16-705 |
| Cow position: | chr15:7234562-7235236 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 78 |
| Conread position: | 16-705 |
| Cow position: | chr15:32720450-32719746 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 94 |
| Conread position: | 22-701 |
| Cow position: | chr15:4386058-4386733 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 101 |
| Conread position: | 22-701 |
| Cow position: | chr15:35753017-35752328 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 77 |
| Conread position: | 40-705 |
| Cow position: | chr15:21449982-21450667 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 139-691 |
| Cow position: | chr15:28986603-28986059 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 375 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 324, 80 |
| Conread position: | 286-588 |
| Cow position: | chr15:3841060-3840758 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 46, 96 |
| Conread position: | 303-705 |
| Cow position: | chr15:4950658-4951043 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 7 |
| Conread position: | 364-527 |
| Cow position: | chr15:7550554-7550728 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 129 |
| Conread position: | 384-697 |
| Cow position: | chr15:5010977-5010658 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 394-705 |
| Cow position: | chr15:4915859-4916174 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 97 |
| Conread position: | 399-589 |
| Cow position: | chr15:17684674-17684477 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 103, 17 |
| Conread position: | 399-706 |
| Cow position: | chr15:41357841-41358150 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 56, 141 |
| Conread position: | 412-656 |
| Cow position: | chr15:1764995-1765240 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 124 |
Show alignments to all cow chromosomes.