Cow genome map
| Conread name: | Utr1-UTR01H020100 |
| Conread position: | 1-118 |
| Cow position: | chr3:22336438-22336557 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-126 |
| Cow position: | chr3:13967461-13967335 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-137 |
| Cow position: | chr3:64027536-64027399 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-138 |
| Cow position: | chr3:4028434-4028572 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-141 |
| Cow position: | chr3:51242920-51243060 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 94, 121 |
| Conread position: | 1-227 |
| Cow position: | chr3:14439213-14438976 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 94, 31 |
| Conread position: | 1-262 |
| Cow position: | chr3:19737130-19737405 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-354 |
| Cow position: | chr3:18463020-18462654 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 244 |
| Conread position: | 1-357 |
| Cow position: | chr3:40339565-40339194 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-358 |
| Cow position: | chr3:30331938-30331565 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 246 |
| Conread position: | 1-358 |
| Cow position: | chr3:36118211-36118582 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 175 |
| Conread position: | 1-399 |
| Cow position: | chr3:24315016-24315431 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 243 |
| Conread position: | 1-409 |
| Cow position: | chr3:41211185-41210761 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 46 |
| Conread position: | 1-416 |
| Cow position: | chr3:49678350-49678776 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 124 |
| Conread position: | 1-444 |
| Cow position: | chr3:20381090-20381549 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-531 |
| Cow position: | chr3:3841258-3840719 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 122 |
| Conread position: | 1-532 |
| Cow position: | chr3:46679977-46680515 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 243 |
| Conread position: | 1-615 |
| Cow position: | chr3:75040613-75039995 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 124 |
| Conread position: | 1-693 |
| Cow position: | chr3:2907222-2906530 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 178 |
| Conread position: | 1-697 |
| Cow position: | chr3:2918010-2918713 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 243 |
| Conread position: | 1-697 |
| Cow position: | chr3:3523569-3524269 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 245 |
| Conread position: | 1-697 |
| Cow position: | chr3:18859960-18860662 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-697 |
| Cow position: | chr3:19800628-19799927 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 242 |
| Conread position: | 1-697 |
| Cow position: | chr3:19879204-19879889 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 22 |
| Conread position: | 1-697 |
| Cow position: | chr3:27918984-27919673 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 96 |
| Conread position: | 1-697 |
| Cow position: | chr3:32622495-32621796 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 245 |
| Conread position: | 1-697 |
| Cow position: | chr3:45033295-45033984 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 243 |
| Conread position: | 1-697 |
| Cow position: | chr3:46860754-46860045 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-697 |
| Cow position: | chr3:47080861-47080165 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 36 |
| Conread position: | 1-697 |
| Cow position: | chr3:47177726-47177023 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 177 |
| Conread position: | 1-697 |
| Cow position: | chr3:64651176-64651882 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 240 |
| Conread position: | 1-697 |
| Cow position: | chr3:66890416-66889722 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 1-697 |
| Cow position: | chr3:68699416-68698728 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 230 |
| Conread position: | 1-697 |
| Cow position: | chr3:68873205-68872510 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 61 |
| Conread position: | 1-698 |
| Cow position: | chr3:23289786-23289088 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 124 |
| Conread position: | 1-701 |
| Cow position: | chr3:21182141-21181444 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 69 |
| Conread position: | 1-705 |
| Cow position: | chr3:6686357-6687051 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 1-705 |
| Cow position: | chr3:37969592-37970299 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 82 |
| Conread position: | 1-705 |
| Cow position: | chr3:50915881-50916597 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 123 |
| Conread position: | 1-705 |
| Cow position: | chr3:64357244-64356545 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 127 |
| Conread position: | 2-690 |
| Cow position: | chr3:63002997-63002306 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 39 |
| Conread position: | 3-379 |
| Cow position: | chr3:42432770-42433155 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 121 |
| Conread position: | 3-389 |
| Cow position: | chr3:45895001-45894603 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 120 |
| Conread position: | 3-590 |
| Cow position: | chr3:50127083-50126469 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 120 |
| Conread position: | 3-666 |
| Cow position: | chr3:66620733-66621397 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-685 |
| Cow position: | chr3:59861924-59862616 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 123 |
| Conread position: | 3-698 |
| Cow position: | chr3:78026868-78026167 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 173 |
| Conread position: | 3-701 |
| Cow position: | chr3:19756399-19755687 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-701 |
| Cow position: | chr3:30315111-30315798 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 125 |
| Conread position: | 3-701 |
| Cow position: | chr3:40823942-40824641 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 60 |
| Conread position: | 3-701 |
| Cow position: | chr3:49544656-49543955 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 29 |
| Conread position: | 3-701 |
| Cow position: | chr3:57484174-57483474 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 74 |
| Conread position: | 3-704 |
| Cow position: | chr3:19939440-19940148 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 371 |
| Conread position: | 3-705 |
| Cow position: | chr3:5884093-5884788 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 119 |
| Conread position: | 3-705 |
| Cow position: | chr3:6782922-6783620 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 237 |
| Conread position: | 3-705 |
| Cow position: | chr3:10240210-10240913 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 238 |
| Conread position: | 3-705 |
| Cow position: | chr3:18812059-18812751 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 59 |
| Conread position: | 3-705 |
| Cow position: | chr3:42447657-42448369 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 120 |
| Conread position: | 3-705 |
| Cow position: | chr3:45975052-45975752 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 120 |
| Conread position: | 3-705 |
| Cow position: | chr3:49136989-49136312 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 120 |
| Conread position: | 3-705 |
| Cow position: | chr3:56339867-56339164 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 3-705 |
| Cow position: | chr3:64016811-64016113 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 94 |
| Conread position: | 3-706 |
| Cow position: | chr3:56145836-56146557 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 83 |
| Conread position: | 3-706 |
| Cow position: | chr3:70887685-70888391 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 60 |
| Conread position: | 3-708 |
| Cow position: | chr3:29579174-29579883 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 200 |
| Conread position: | 4-354 |
| Cow position: | chr3:7480678-7480313 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 241 |
| Conread position: | 5-587 |
| Cow position: | chr3:24353475-24354036 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 65 |
| Conread position: | 5-705 |
| Cow position: | chr3:53516166-53516857 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 73 |
| Conread position: | 7-705 |
| Cow position: | chr3:48229908-48229223 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 57 |
| Conread position: | 10-495 |
| Cow position: | chr3:58948174-58948663 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 40 |
| Conread position: | 11-695 |
| Cow position: | chr3:40342700-40343369 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 45 |
| Conread position: | 14-241 |
| Cow position: | chr3:7247237-7247479 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 210 |
| Conread position: | 14-697 |
| Cow position: | chr3:7169769-7170448 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 109 |
| Conread position: | 15-697 |
| Cow position: | chr3:36863897-36863213 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 108 |
| Conread position: | 16-706 |
| Cow position: | chr3:12679280-12678592 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 231 |
| Conread position: | 17-706 |
| Cow position: | chr3:7158161-7157466 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 227 |
| Conread position: | 35-697 |
| Cow position: | chr3:2869361-2870033 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 211 |
| Conread position: | 48-322 |
| Cow position: | chr3:56326520-56326804 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 160 |
| Conread position: | 137-705 |
| Cow position: | chr3:6877473-6876921 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 52 |
| Conread position: | 146-673 |
| Cow position: | chr3:63200320-63200823 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 87 |
| Conread position: | 221-696 |
| Cow position: | chr3:37625779-37626225 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 330 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 104, 35 |
| Conread position: | 310-697 |
| Cow position: | chr3:74058408-74058771 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 407-637 |
| Cow position: | chr3:56326841-56327078 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 54, 109 |
| Conread position: | 429-693 |
| Cow position: | chr3:83232162-83231894 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 56, 36 |
Show alignments to all cow chromosomes.