Cow genome map
| Conread name: | Utr1-UTR01H020100 |
| Conread position: | 1-157 |
| Cow position: | chr5:14380591-14380748 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-157 |
| Cow position: | chr5:18666443-18666600 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-215 |
| Cow position: | chr5:2531704-2531932 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-224 |
| Cow position: | chr5:4089520-4089754 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 118, 96 |
| Conread position: | 1-322 |
| Cow position: | chr5:44784464-44784129 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-358 |
| Cow position: | chr5:241651-242016 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 93 |
| Conread position: | 1-448 |
| Cow position: | chr5:29766338-29766790 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 121 |
| Conread position: | 1-523 |
| Cow position: | chr5:44459932-44460462 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-558 |
| Cow position: | chr5:45181695-45181132 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-639 |
| Cow position: | chr5:6588570-6587927 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 1-665 |
| Cow position: | chr5:51770498-51769842 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 135 |
| Conread position: | 1-674 |
| Cow position: | chr5:28012105-28012800 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 87 |
| Conread position: | 1-690 |
| Cow position: | chr5:4757714-4757032 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 240 |
| Conread position: | 1-696 |
| Cow position: | chr5:53625441-53624772 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 124 |
| Conread position: | 1-697 |
| Cow position: | chr5:10775818-10775112 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 94 |
| Conread position: | 1-697 |
| Cow position: | chr5:10842930-10842230 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 244 |
| Conread position: | 1-697 |
| Cow position: | chr5:18122027-18121331 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 214 |
| Conread position: | 1-697 |
| Cow position: | chr5:18664241-18664935 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-697 |
| Cow position: | chr5:23959866-23959178 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 243 |
| Conread position: | 1-697 |
| Cow position: | chr5:26078747-26078041 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 229 |
| Conread position: | 1-697 |
| Cow position: | chr5:27908823-27908119 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-697 |
| Cow position: | chr5:35300548-35301250 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-697 |
| Cow position: | chr5:46807761-46808464 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-697 |
| Cow position: | chr5:58196475-58197169 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 43 |
| Conread position: | 1-697 |
| Cow position: | chr5:59061063-59061789 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-702 |
| Cow position: | chr5:3964896-3965600 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 246 |
| Conread position: | 1-703 |
| Cow position: | chr5:46005403-46004700 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 124 |
| Conread position: | 1-705 |
| Cow position: | chr5:41961274-41960584 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 122 |
| Conread position: | 1-705 |
| Cow position: | chr5:45700764-45701473 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 124 |
| Conread position: | 1-706 |
| Cow position: | chr5:42505453-42506165 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 230 |
| Conread position: | 1-708 |
| Cow position: | chr5:18401251-18400527 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 405 |
| Conread position: | 2-215 |
| Cow position: | chr5:31101174-31100950 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 141, 95 |
| Conread position: | 2-385 |
| Cow position: | chr5:49591644-49591251 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 73 |
| Conread position: | 2-697 |
| Cow position: | chr5:31707001-31707714 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 396 |
| Conread position: | 2-697 |
| Cow position: | chr5:47830621-47829926 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 392 |
| Conread position: | 3-157 |
| Cow position: | chr5:41465481-41465635 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 92, 123 |
| Conread position: | 3-223 |
| Cow position: | chr5:415265-415032 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-330 |
| Cow position: | chr5:48467829-48467488 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 241 |
| Conread position: | 3-598 |
| Cow position: | chr5:38073483-38074083 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 241 |
| Conread position: | 3-658 |
| Cow position: | chr5:10919277-10919932 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-688 |
| Cow position: | chr5:7274283-7274983 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-697 |
| Cow position: | chr5:4018748-4018047 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 38 |
| Conread position: | 3-697 |
| Cow position: | chr5:73489106-73488409 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-701 |
| Cow position: | chr5:1341580-1340875 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-701 |
| Cow position: | chr5:4069672-4070376 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-704 |
| Cow position: | chr5:3786374-3787083 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 121 |
| Conread position: | 3-705 |
| Cow position: | chr5:3503664-3502949 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 123 |
| Conread position: | 3-705 |
| Cow position: | chr5:4385695-4386396 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-705 |
| Cow position: | chr5:24099124-24099820 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 171 |
| Conread position: | 3-705 |
| Cow position: | chr5:30579779-30580503 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 122 |
| Conread position: | 3-705 |
| Cow position: | chr5:34697055-34697760 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-705 |
| Cow position: | chr5:37732803-37733508 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 123 |
| Conread position: | 3-705 |
| Cow position: | chr5:46738122-46737430 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-705 |
| Cow position: | chr5:54792185-54791473 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-705 |
| Cow position: | chr5:57482087-57481381 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 242 |
| Conread position: | 3-706 |
| Cow position: | chr5:2914902-2915607 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 36 |
| Conread position: | 5-410 |
| Cow position: | chr5:43003545-43003955 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 284 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 90, 118 |
| Conread position: | 8-705 |
| Cow position: | chr5:48808282-48807573 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 237 |
| Conread position: | 9-410 |
| Cow position: | chr5:54861589-54861190 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 11-705 |
| Cow position: | chr5:64781555-64780856 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 112 |
| Conread position: | 16-567 |
| Cow position: | chr5:35526271-35526830 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 219 |
| Conread position: | 18-646 |
| Cow position: | chr5:41956888-41956273 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 9 |
| Conread position: | 138-706 |
| Cow position: | chr5:23669520-23668969 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 170-706 |
| Cow position: | chr5:40788693-40789219 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 219 |
| Conread position: | 180-706 |
| Cow position: | chr5:307685-307166 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 202-603 |
| Cow position: | chr5:9419406-9419018 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 32 |
| Conread position: | 222-705 |
| Cow position: | chr5:31100738-31100269 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 11 |
| Conread position: | 233-701 |
| Cow position: | chr5:10856120-10855662 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 87 |
| Conread position: | 237-697 |
| Cow position: | chr5:5103905-5104374 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 111 |
| Conread position: | 385-681 |
| Cow position: | chr5:48855047-48855344 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 72, 127 |
| Conread position: | 389-697 |
| Cow position: | chr5:46777242-46777545 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 27 |
Show alignments to all cow chromosomes.