Cow genome map
| Conread name: | Utr1-UTR01H020100 |
| Conread position: | 1-113 |
| Cow position: | chr6:10644130-10644244 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-140 |
| Cow position: | chr6:41804459-41804599 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 96, 122 |
| Conread position: | 1-157 |
| Cow position: | chr6:33323-33480 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-157 |
| Cow position: | chr6:3048675-3048518 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 1-157 |
| Cow position: | chr6:10499133-10498976 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-157 |
| Cow position: | chr6:24322790-24322633 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-157 |
| Cow position: | chr6:39909118-39909272 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-157 |
| Cow position: | chr6:69221619-69221462 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-157 |
| Cow position: | chr6:69233121-69232964 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 1-206 |
| Cow position: | chr6:65914790-65915002 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 1-215 |
| Cow position: | chr6:40326092-40325864 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-380 |
| Cow position: | chr6:7140871-7140479 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 212 |
| Conread position: | 1-385 |
| Cow position: | chr6:16052471-16052870 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 242 |
| Conread position: | 1-391 |
| Cow position: | chr6:40252252-40252654 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 51 |
| Conread position: | 1-393 |
| Cow position: | chr6:40315976-40316386 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-411 |
| Cow position: | chr6:6475277-6474853 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 1-460 |
| Cow position: | chr6:59918480-59918023 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 242 |
| Conread position: | 1-467 |
| Cow position: | chr6:47042607-47042129 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 240 |
| Conread position: | 1-506 |
| Cow position: | chr6:43793118-43792599 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 69 |
| Conread position: | 1-559 |
| Cow position: | chr6:65928559-65929117 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 123 |
| Conread position: | 1-653 |
| Cow position: | chr6:43999652-44000310 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-669 |
| Cow position: | chr6:8021488-8022150 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 9 |
| Conread position: | 1-676 |
| Cow position: | chr6:50634562-50635226 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 48 |
| Conread position: | 1-695 |
| Cow position: | chr6:58601072-58601771 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 1-697 |
| Cow position: | chr6:330875-330175 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 180 |
| Conread position: | 1-697 |
| Cow position: | chr6:2375292-2375973 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 37 |
| Conread position: | 1-697 |
| Cow position: | chr6:12665728-12665027 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 51 |
| Conread position: | 1-697 |
| Cow position: | chr6:13104648-13105352 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 240 |
| Conread position: | 1-697 |
| Cow position: | chr6:13944498-13945201 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 243 |
| Conread position: | 1-697 |
| Cow position: | chr6:26670277-26669573 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 249 |
| Conread position: | 1-697 |
| Cow position: | chr6:40275679-40276377 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 1-697 |
| Cow position: | chr6:68027511-68028223 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 244 |
| Conread position: | 1-703 |
| Cow position: | chr6:17597700-17597014 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 116 |
| Conread position: | 1-703 |
| Cow position: | chr6:44149965-44149253 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 123 |
| Conread position: | 1-705 |
| Cow position: | chr6:7178681-7177989 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 126 |
| Conread position: | 1-705 |
| Cow position: | chr6:13847617-13848320 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 107 |
| Conread position: | 2-703 |
| Cow position: | chr6:43618307-43619018 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 242 |
| Conread position: | 3-117 |
| Cow position: | chr6:51714293-51714409 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 3-535 |
| Cow position: | chr6:65881805-65882343 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 122 |
| Conread position: | 3-697 |
| Cow position: | chr6:24239650-24240353 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-697 |
| Cow position: | chr6:27170170-27170871 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 89 |
| Conread position: | 3-701 |
| Cow position: | chr6:8202775-8203485 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-701 |
| Cow position: | chr6:15140589-15139881 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 120 |
| Conread position: | 3-701 |
| Cow position: | chr6:21973249-21973963 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 3-701 |
| Cow position: | chr6:35876120-35875412 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 119 |
| Conread position: | 3-703 |
| Cow position: | chr6:28490972-28490270 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 78 |
| Conread position: | 3-705 |
| Cow position: | chr6:185190-184477 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-705 |
| Cow position: | chr6:1822034-1821323 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 242 |
| Conread position: | 3-705 |
| Cow position: | chr6:3487829-3487128 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-705 |
| Cow position: | chr6:5949181-5948483 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 238 |
| Conread position: | 3-705 |
| Cow position: | chr6:25214816-25215514 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 123 |
| Conread position: | 3-705 |
| Cow position: | chr6:27471195-27471876 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 3-705 |
| Cow position: | chr6:66232406-66233103 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 4-705 |
| Cow position: | chr6:17046654-17047358 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 66 |
| Conread position: | 5-698 |
| Cow position: | chr6:20560511-20559810 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 5-701 |
| Cow position: | chr6:27529410-27528702 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 121 |
| Conread position: | 5-705 |
| Cow position: | chr6:8760704-8759999 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 70 |
| Conread position: | 8-157 |
| Cow position: | chr6:65842180-65842332 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 55 |
| Conread position: | 8-705 |
| Cow position: | chr6:55542655-55541959 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 115 |
| Conread position: | 10-581 |
| Cow position: | chr6:38271501-38272056 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 116 |
| Conread position: | 14-634 |
| Cow position: | chr6:6567192-6567810 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 236 |
| Conread position: | 17-698 |
| Cow position: | chr6:40553958-40553282 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 8 |
| Conread position: | 22-705 |
| Cow position: | chr6:3276763-3276071 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 103 |
| Conread position: | 22-705 |
| Cow position: | chr6:15279195-15278519 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 218 |
| Conread position: | 23-705 |
| Cow position: | chr6:40866705-40866024 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 102 |
| Conread position: | 26-622 |
| Cow position: | chr6:1411042-1410436 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 217 |
| Conread position: | 29-701 |
| Cow position: | chr6:30274273-30273601 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 94 |
| Conread position: | 46-705 |
| Cow position: | chr6:28169539-28170202 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 79 |
| Conread position: | 51-705 |
| Cow position: | chr6:13316831-13316168 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 71 |
| Conread position: | 53-701 |
| Cow position: | chr6:702844-703506 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 72 |
| Conread position: | 140-622 |
| Cow position: | chr6:7834268-7834732 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 325 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 192, 86 |
| Conread position: | 167-697 |
| Cow position: | chr6:39910104-39910627 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 189-705 |
| Cow position: | chr6:18973616-18973116 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 45 |
| Conread position: | 316-703 |
| Cow position: | chr6:10250680-10250310 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 60 |
| Conread position: | 370-697 |
| Cow position: | chr6:7140371-7140050 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 13 |
| Conread position: | 402-697 |
| Cow position: | chr6:16053096-16053398 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 14 |
Show alignments to all cow chromosomes.