Cow genome map
| Conread name: | Utr2-C0001780_A02 |
| Conread position: | 1-297 |
| Cow position: | chr17:22498836-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 14, 77 |
| Conread position: | 1-403 |
| Cow position: | chr17:22499256-22498852 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 327 |
| Conread position: | 1-414 |
| Cow position: | chr17:41440816-41440401 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 102 |
| Conread position: | 1-421 |
| Cow position: | chr17:22499424-22499002 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 11 |
| Conread position: | 5-310 |
| Cow position: | chr17:22451984-22451679 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 204 |
| Conread position: | 9-423 |
| Cow position: | chr17:22473232-22473645 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 32 |
| Conread position: | 10-375 |
| Cow position: | chr17:22473568-22473934 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 149 |
| Conread position: | 13-423 |
| Cow position: | chr17:22473487-22473897 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 240 |
| Conread position: | 14-371 |
| Cow position: | chr17:22451891-22451536 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 103, 111 |
| Conread position: | 14-392 |
| Cow position: | chr17:22551858-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-397 |
| Cow position: | chr17:22589948-22589565 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 321 |
| Conread position: | 14-398 |
| Cow position: | chr17:22499157-22498773 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-403 |
| Cow position: | chr17:22551942-22551553 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-403 |
| Cow position: | chr17:22552278-22551889 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 58 |
| Conread position: | 14-404 |
| Cow position: | chr17:22499325-22498935 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 310 |
| Conread position: | 14-404 |
| Cow position: | chr17:22552446-22552056 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-404 |
| Cow position: | chr17:22589864-22589474 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 310 |
| Conread position: | 14-407 |
| Cow position: | chr17:22452227-22451834 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-411 |
| Cow position: | chr17:22552026-22551629 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 240 |
| Conread position: | 14-412 |
| Cow position: | chr17:22452311-22451913 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-412 |
| Cow position: | chr17:22552194-22551796 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-423 |
| Cow position: | chr17:22452143-22451734 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 318 |
| Conread position: | 15-283 |
| Cow position: | chr17:22589443-22589175 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 66, 78 |
| Conread position: | 15-397 |
| Cow position: | chr17:22552697-22552315 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-398 |
| Cow position: | chr17:22473405-22473789 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 379, 0 |
| Conread position: | 15-405 |
| Cow position: | chr17:22553117-22552727 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-405 |
| Cow position: | chr17:22590199-22589809 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-405 |
| Cow position: | chr17:22590283-22589893 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-423 |
| Cow position: | chr17:22452058-22451650 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-411 |
| Cow position: | chr17:22552527-22552133 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-422 |
| Cow position: | chr17:22452389-22451987 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-422 |
| Cow position: | chr17:22498978-22498581 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 253 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 219, 227 |
| Conread position: | 26-397 |
| Cow position: | chr17:22473331-22473703 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 46 |
| Conread position: | 27-404 |
| Cow position: | chr17:22590018-22589642 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 5 |
| Conread position: | 28-403 |
| Cow position: | chr17:22590104-22589727 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 305 |
| Conread position: | 28-409 |
| Cow position: | chr17:22589684-22589301 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 308 |
| Conread position: | 29-404 |
| Cow position: | chr17:22473173-22473542 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 30-398 |
| Cow position: | chr17:22589764-22589396 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 307 |
| Conread position: | 30-403 |
| Cow position: | chr17:22552094-22551721 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 287 |
| Conread position: | 30-403 |
| Cow position: | chr17:22552346-22551973 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-403 |
| Cow position: | chr17:22553018-22552645 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-411 |
| Cow position: | chr17:22552766-22552385 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-423 |
| Cow position: | chr17:22552850-22552457 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-403 |
| Cow position: | chr17:22552595-22552225 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-414 |
| Cow position: | chr17:41441118-41440737 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 232, 239 |
| Conread position: | 36-381 |
| Cow position: | chr17:22498883-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-397 |
| Cow position: | chr17:41440678-41440334 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 41, 34 |
| Conread position: | 80-422 |
| Cow position: | chr17:22452413-22452071 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 251 |
| Conread position: | 93-398 |
| Cow position: | chr17:22590289-22589984 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 219, 240 |
| Conread position: | 94-403 |
| Cow position: | chr17:22553122-22552813 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 261-423 |
| Cow position: | chr17:22452400-22452238 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.