Cow genome map

Conread name: Utr2-C0001780_A02

Conread position: 1-403
Cow position: chr19:14960167-14959767 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 293

Conread position: 1-422
Cow position: chr19:14940296-14940719 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 1-423
Cow position: chr19:23649778-23650202 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 68

Conread position: 7-398
Cow position: chr19:14959505-14959123 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 258
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 171, 152

Conread position: 7-398
Cow position: chr19:20677595-20677986 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 162

Conread position: 7-403
Cow position: chr19:20678183-20678579 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 316

Conread position: 7-413
Cow position: chr19:23597010-23597415 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 26

Conread position: 9-381
Cow position: chr19:14916111-14916470 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 244
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 12, 19

Conread position: 9-402
Cow position: chr19:43570076-43569685 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 343

Conread position: 9-403
Cow position: chr19:23613496-23613892 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 65

Conread position: 9-411
Cow position: chr19:23614756-23615155 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 354

Conread position: 9-420
Cow position: chr19:14916027-14916434 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 261
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 28, 102

Conread position: 9-423
Cow position: chr19:14960411-14959997 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 258

Conread position: 10-403
Cow position: chr19:20677766-20678159 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 258
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 157, 147

Conread position: 10-407
Cow position: chr19:20678018-20678415 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 65

Conread position: 10-407
Cow position: chr19:20678270-20678667 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 314

Conread position: 10-412
Cow position: chr19:14940139-14940541 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-382
Cow position: chr19:20635396-20635026 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 59

Conread position: 12-405
Cow position: chr19:23614005-23614398 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 230

Conread position: 12-408
Cow position: chr19:20677852-20678248 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 256
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 147, 167

Conread position: 12-414
Cow position: chr19:14940057-14940459 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 81

Conread position: 12-421
Cow position: chr19:14940645-14941054 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-421
Cow position: chr19:20677516-20677925 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 78

Conread position: 13-403
Cow position: chr19:20635647-20635257 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 255
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 249, 226

Conread position: 13-404
Cow position: chr19:20678105-20678496 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 77

Conread position: 14-352
Cow position: chr19:14940731-14941069 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-372
Cow position: chr19:14959171-14958819 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 245
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 272, 52

Conread position: 14-397
Cow position: chr19:43570237-43569854 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 58

Conread position: 14-398
Cow position: chr19:14948479-14948096 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 249
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 79, 0

Conread position: 14-398
Cow position: chr19:23613587-23613971 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 239

Conread position: 14-403
Cow position: chr19:23613923-23614312 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 238

Conread position: 14-403
Cow position: chr19:23614091-23614480 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 320

Conread position: 14-403
Cow position: chr19:23614427-23614816 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 215

Conread position: 14-403
Cow position: chr19:23614595-23614984 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 257
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 238, 226

Conread position: 14-404
Cow position: chr19:14940479-14940869 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-404
Cow position: chr19:14959582-14959201 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 252
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 274, 0

Conread position: 14-405
Cow position: chr19:23613419-23613810 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 155

Conread position: 14-407
Cow position: chr19:23649877-23650270 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 56

Conread position: 14-408
Cow position: chr19:23613671-23614065 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-411
Cow position: chr19:23614343-23614740 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 318

Conread position: 14-414
Cow position: chr19:14960236-14959838 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 14-417
Cow position: chr19:14948396-14947993 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 381, 389

Conread position: 14-423
Cow position: chr19:14940395-14940804 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-423
Cow position: chr19:23649709-23650118 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 316

Conread position: 15-301
Cow position: chr19:14959092-14958806 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 186
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 15-397
Cow position: chr19:23597269-23597651 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-403
Cow position: chr19:23614176-23614564 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 238

Conread position: 15-403
Cow position: chr19:43570394-43570016 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 15-410
Cow position: chr19:14940564-14940959 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-412
Cow position: chr19:23650046-23650443 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 315

Conread position: 15-414
Cow position: chr19:14940228-14940627 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 304

Conread position: 15-423
Cow position: chr19:20635477-20635069 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 56

Conread position: 15-423
Cow position: chr19:43570152-43569744 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 56

Conread position: 16-397
Cow position: chr19:23614261-23614642 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 139

Conread position: 22-405
Cow position: chr19:14939980-14940366 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 23-414
Cow position: chr19:43570467-43570089 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 260
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 46, 19

Conread position: 24-406
Cow position: chr19:14959739-14959358 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 247
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 29, 88

Conread position: 25-302
Cow position: chr19:20635299-20635022 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 25-384
Cow position: chr19:23649972-23650331 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 25-405
Cow position: chr19:20635551-20635171 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 130

Conread position: 25-405
Cow position: chr19:20677361-20677741 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 236
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 63, 46

Conread position: 25-407
Cow position: chr19:23614522-23614904 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 225

Conread position: 27-370
Cow position: chr19:14959652-14959310 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 18

Conread position: 27-397
Cow position: chr19:14959242-14958878 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 29-409
Cow position: chr19:23597199-23597579 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 29-414
Cow position: chr19:23596950-23597332 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 249
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 95, 83

Conread position: 30-289
Cow position: chr19:23597452-23597711 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 144, 125

Conread position: 30-336
Cow position: chr19:23650145-23650450 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 211
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 145, 128

Conread position: 30-407
Cow position: chr19:23613771-23614148 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 136

Conread position: 30-412
Cow position: chr19:23649641-23650023 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 55

Conread position: 30-413
Cow position: chr19:23649389-23649772 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-414
Cow position: chr19:23597116-23597500 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 60

Conread position: 30-414
Cow position: chr19:23649305-23649689 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 252
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 140, 130

Conread position: 30-422
Cow position: chr19:23613351-23613743 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 198

Conread position: 30-423
Cow position: chr19:23649473-23649866 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 301

Conread position: 30-423
Cow position: chr19:23649557-23649950 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 139

Conread position: 31-409
Cow position: chr19:23596868-23597243 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 246
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 279, 164

Conread position: 33-397
Cow position: chr19:20677453-20677817 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 233
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 132, 143

Conread position: 54-403
Cow position: chr19:43570278-43569932 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 17

Conread position: 86-398
Cow position: chr19:23649277-23649589 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 201
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 84, 70

Conread position: 89-422
Cow position: chr19:14960413-14960082 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 0

Conread position: 93-414
Cow position: chr19:14948484-14948164 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 216
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 85, 0

Conread position: 96-411
Cow position: chr19:14939973-14940288 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 208
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 96-413
Cow position: chr19:23596849-23597163 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 202
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 68

Conread position: 112-405
Cow position: chr19:14915962-14916255 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 197
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 33, 131

Conread position: 180-412
Cow position: chr19:14939973-14940205 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 157
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 195-410
Cow position: chr19:23649302-23649517 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 141
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 195-423
Cow position: chr19:14960475-14960247 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 149
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 197-407
Cow position: chr19:23613350-23613560 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.