Cow genome map
| Conread name: | Utr2-C0001780_A02 |
| Conread position: | 1-298 |
| Cow position: | chr23:24546940-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 162 |
| Conread position: | 1-354 |
| Cow position: | chr23:24547024-24546669 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-422 |
| Cow position: | chr23:24535907-24535484 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-423 |
| Cow position: | chr23:24547108-24546684 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-423 |
| Cow position: | chr23:24626278-24626702 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 2-383 |
| Cow position: | chr23:24639691-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 88 |
| Conread position: | 3-403 |
| Cow position: | chr23:24535988-24535587 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 9-414 |
| Cow position: | chr23:25626092-25626499 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 146 |
| Conread position: | 10-297 |
| Cow position: | chr23:24654098-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-352 |
| Cow position: | chr23:25724062-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-403 |
| Cow position: | chr23:25698677-25698282 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 32, 66 |
| Conread position: | 14-254 |
| Cow position: | chr23:24522415-24522175 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-353 |
| Cow position: | chr23:25698419-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 14-370 |
| Cow position: | chr23:24560485-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-384 |
| Cow position: | chr23:24626377-24626745 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 0 |
| Conread position: | 14-397 |
| Cow position: | chr23:24547261-24546878 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 58 |
| Conread position: | 14-403 |
| Cow position: | chr23:24560653-24560264 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-404 |
| Cow position: | chr23:24639201-24639591 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 14-405 |
| Cow position: | chr23:25660220-25660611 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 166 |
| Conread position: | 14-423 |
| Cow position: | chr23:24560821-24560412 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 104 |
| Conread position: | 14-423 |
| Cow position: | chr23:25626015-25626424 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 315 |
| Conread position: | 15-412 |
| Cow position: | chr23:25698502-25698105 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 16-370 |
| Cow position: | chr23:25626686-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-414 |
| Cow position: | chr23:24560903-24560505 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 54 |
| Conread position: | 20-397 |
| Cow position: | chr23:25626441-25626815 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 93 |
| Conread position: | 24-412 |
| Cow position: | chr23:24639463-24639851 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 308 |
| Conread position: | 25-326 |
| Cow position: | chr23:24535713-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 267, 293 |
| Conread position: | 25-409 |
| Cow position: | chr23:25660315-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 71 |
| Conread position: | 25-414 |
| Cow position: | chr23:24639296-24639685 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 254 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 285, 299 |
| Conread position: | 25-423 |
| Cow position: | chr23:24547166-24546768 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-423 |
| Cow position: | chr23:24560557-24560160 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-397 |
| Cow position: | chr23:24547332-24546962 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 43 |
| Conread position: | 27-403 |
| Cow position: | chr23:24639550-24639926 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-411 |
| Cow position: | chr23:25625944-25626328 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 48, 44 |
| Conread position: | 28-410 |
| Cow position: | chr23:24522816-24522439 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 246, 23 |
| Conread position: | 29-361 |
| Cow position: | chr23:25660403-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-409 |
| Cow position: | chr23:24522567-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 125 |
| Conread position: | 30-413 |
| Cow position: | chr23:25626199-25626582 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 328 |
| Conread position: | 30-414 |
| Cow position: | chr23:24639637-24640021 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-414 |
| Cow position: | chr23:25626616-25627000 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-423 |
| Cow position: | chr23:25626535-25626925 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 33-409 |
| Cow position: | chr23:24560718-24560342 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-414 |
| Cow position: | chr23:24639388-24639769 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-386 |
| Cow position: | chr23:24654042-24654390 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-411 |
| Cow position: | chr23:25660167-25660533 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-412 |
| Cow position: | chr23:24536029-24535662 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-423 |
| Cow position: | chr23:24522717-24522342 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 145, 107 |
| Conread position: | 89-410 |
| Cow position: | chr23:25698680-25698359 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 64, 69 |
| Conread position: | 93-412 |
| Cow position: | chr23:24560910-24560591 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 94-413 |
| Cow position: | chr23:24639197-24639516 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 184, 192 |
| Conread position: | 97-414 |
| Cow position: | chr23:25724143-25723826 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-405 |
| Cow position: | chr23:25724058-25723751 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 108-414 |
| Cow position: | chr23:25660146-25660452 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 108-423 |
| Cow position: | chr23:24536050-24535735 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 228, 223 |
| Conread position: | 109-414 |
| Cow position: | chr23:24547334-24547029 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 113-423 |
| Cow position: | chr23:24522815-24522510 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 245, 25 |
| Conread position: | 192-417 |
| Cow position: | chr23:25660146-25660371 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-398 |
| Cow position: | chr23:24654043-24654234 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.