Cow genome map
| Conread name: | Utr2-C0001780_A02 |
| Conread position: | 2-403 |
| Cow position: | chr28:9290306-9290707 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 69 |
| Conread position: | 7-369 |
| Cow position: | chr28:9299199-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 19 |
| Conread position: | 8-398 |
| Cow position: | chr28:7810408-7810791 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 129 |
| Conread position: | 8-399 |
| Cow position: | chr28:7757728-7758121 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 9-403 |
| Cow position: | chr28:7757897-7758293 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 9-409 |
| Cow position: | chr28:9290231-9290629 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 144 |
| Conread position: | 9-411 |
| Cow position: | chr28:34679499-34679103 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 10, 114 |
| Conread position: | 10-383 |
| Cow position: | chr28:34673417-34673792 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-411 |
| Cow position: | chr28:9298965-9299350 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 316, 29 |
| Conread position: | 13-217 |
| Cow position: | chr28:7810742-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 13-414 |
| Cow position: | chr28:33210211-33210613 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 0 |
| Conread position: | 14-242 |
| Cow position: | chr28:9290486-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-319 |
| Cow position: | chr28:9299373-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 256, 198 |
| Conread position: | 14-370 |
| Cow position: | chr28:9253255-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-382 |
| Cow position: | chr28:11333733-11333371 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 266, 0 |
| Conread position: | 14-399 |
| Cow position: | chr28:7758392-7758777 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 155 |
| Conread position: | 14-404 |
| Cow position: | chr28:7757652-7758042 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 65 |
| Conread position: | 14-404 |
| Cow position: | chr28:7758072-7758446 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 264, 0 |
| Conread position: | 14-406 |
| Cow position: | chr28:7757820-7758213 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 318 |
| Conread position: | 14-411 |
| Cow position: | chr28:9252753-9253148 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 191, 139 |
| Conread position: | 14-411 |
| Cow position: | chr28:11333985-11333588 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 318 |
| Conread position: | 14-423 |
| Cow position: | chr28:11334153-11333744 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 155 |
| Conread position: | 15-206 |
| Cow position: | chr28:9253424-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-301 |
| Cow position: | chr28:7810660-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 60, 56 |
| Conread position: | 15-396 |
| Cow position: | chr28:9298719-9299098 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 248 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 379, 96 |
| Conread position: | 15-403 |
| Cow position: | chr28:9253004-9253392 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-421 |
| Cow position: | chr28:34696159-34696555 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-422 |
| Cow position: | chr28:34695907-34696304 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 81, 71 |
| Conread position: | 26-398 |
| Cow position: | chr28:9298813-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 242 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 27-414 |
| Cow position: | chr28:34695993-34696380 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-384 |
| Cow position: | chr28:7810590-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-403 |
| Cow position: | chr28:7757583-7757957 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 134 |
| Conread position: | 29-403 |
| Cow position: | chr28:9252933-9253308 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 225 |
| Conread position: | 29-403 |
| Cow position: | chr28:9299066-9299426 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 254 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 216, 128 |
| Conread position: | 29-421 |
| Cow position: | chr28:9289917-9290307 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 30-326 |
| Cow position: | chr28:9290419-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 30-382 |
| Cow position: | chr28:11333885-11333533 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-398 |
| Cow position: | chr28:11334053-11333684 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 30-403 |
| Cow position: | chr28:7757416-7757789 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 98 |
| Conread position: | 30-403 |
| Cow position: | chr28:9253103-9253476 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-411 |
| Cow position: | chr28:7757500-7757881 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-412 |
| Cow position: | chr28:9253187-9253569 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-412 |
| Cow position: | chr28:34673523-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 155, 150 |
| Conread position: | 30-421 |
| Cow position: | chr28:9298567-9298956 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 98 |
| Conread position: | 30-421 |
| Cow position: | chr28:34696080-34696471 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-423 |
| Cow position: | chr28:7758324-7758717 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 228 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 280, 294 |
| Conread position: | 31-412 |
| Cow position: | chr28:9290089-9290465 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 130, 119 |
| Conread position: | 31-421 |
| Cow position: | chr28:34695829-34696219 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 159, 149 |
| Conread position: | 32-411 |
| Cow position: | chr28:7757334-7757713 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 51 |
| Conread position: | 37-411 |
| Cow position: | chr28:34673362-34673736 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 206, 214 |
| Conread position: | 49-393 |
| Cow position: | chr28:7810283-7810618 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 251, 0 |
| Conread position: | 83-403 |
| Cow position: | chr28:9252903-9253224 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 38, 253 |
| Conread position: | 89-403 |
| Cow position: | chr28:7810566-7810880 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 93-414 |
| Cow position: | chr28:34679579-34679257 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 93-421 |
| Cow position: | chr28:11334242-11333914 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 75 |
| Conread position: | 97-420 |
| Cow position: | chr28:11334154-11333832 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 318, 0 |
| Conread position: | 108-403 |
| Cow position: | chr28:9298561-9298854 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 106 |
| Conread position: | 111-404 |
| Cow position: | chr28:9299218-9299511 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 133, 140 |
| Conread position: | 217-405 |
| Cow position: | chr28:7810283-7810471 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.