Cow genome map
| Conread name: | Utr2-C0001780_A02 |
| Conread position: | 1-405 |
| Cow position: | chr7:1014326-1014726 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 21, 323 |
| Conread position: | 1-405 |
| Cow position: | chr7:8243691-8244094 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 159 |
| Conread position: | 1-409 |
| Cow position: | chr7:3179750-3180161 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-408 |
| Cow position: | chr7:8325628-8326035 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 269 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 14, 92 |
| Conread position: | 6-391 |
| Cow position: | chr7:8277992-8278377 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 70, 93 |
| Conread position: | 6-404 |
| Cow position: | chr7:1014829-1015229 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 7-384 |
| Cow position: | chr7:11434911-11434546 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 12, 71 |
| Conread position: | 7-403 |
| Cow position: | chr7:8243112-8243507 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 90, 65 |
| Conread position: | 7-409 |
| Cow position: | chr7:8277825-8278227 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 75, 86 |
| Conread position: | 8-403 |
| Cow position: | chr7:8243027-8243423 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 9, 171 |
| Conread position: | 8-403 |
| Cow position: | chr7:8277740-8278137 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 171 |
| Conread position: | 8-407 |
| Cow position: | chr7:8324793-8325194 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 72 |
| Conread position: | 9-412 |
| Cow position: | chr7:1015084-1015491 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 312 |
| Conread position: | 10-321 |
| Cow position: | chr7:11600787-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 77 |
| Conread position: | 10-342 |
| Cow position: | chr7:18390478-18390810 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 62 |
| Conread position: | 10-397 |
| Cow position: | chr7:3179845-3180232 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 243 |
| Conread position: | 10-403 |
| Cow position: | chr7:3180433-3180824 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 0 |
| Conread position: | 10-403 |
| Cow position: | chr7:11600871-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-414 |
| Cow position: | chr7:11601123-11600719 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-270 |
| Cow position: | chr7:11600701-11600443 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 166, 146 |
| Conread position: | 13-405 |
| Cow position: | chr7:11600952-11600560 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 156 |
| Conread position: | 13-409 |
| Cow position: | chr7:1439874-1440269 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 98 |
| Conread position: | 14-360 |
| Cow position: | chr7:42878620-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-393 |
| Cow position: | chr7:42879124-42878745 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-397 |
| Cow position: | chr7:11601203-11600820 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 14-397 |
| Cow position: | chr7:42879040-42878657 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 305 |
| Conread position: | 14-403 |
| Cow position: | chr7:1014755-1015144 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-404 |
| Cow position: | chr7:1438317-1438707 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 135, 152 |
| Conread position: | 14-411 |
| Cow position: | chr7:42878956-42878559 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 236 |
| Conread position: | 14-412 |
| Cow position: | chr7:1014671-1015069 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 80 |
| Conread position: | 14-412 |
| Cow position: | chr7:3180269-3180667 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-414 |
| Cow position: | chr7:3179933-3180333 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 143 |
| Conread position: | 14-423 |
| Cow position: | chr7:11601035-11600626 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 58 |
| Conread position: | 15-238 |
| Cow position: | chr7:8243875-8244095 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 15-294 |
| Cow position: | chr7:11434502-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 15-321 |
| Cow position: | chr7:8325810-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 151, 168 |
| Conread position: | 15-403 |
| Cow position: | chr7:3180102-3180490 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-403 |
| Cow position: | chr7:8324970-8325358 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 64, 79 |
| Conread position: | 15-403 |
| Cow position: | chr7:8325054-8325442 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 143 |
| Conread position: | 15-403 |
| Cow position: | chr7:42878871-42878483 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-405 |
| Cow position: | chr7:8325390-8325780 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 144, 159 |
| Conread position: | 15-409 |
| Cow position: | chr7:11434663-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 67, 78 |
| Conread position: | 15-411 |
| Cow position: | chr7:42878787-42878391 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-412 |
| Cow position: | chr7:1014426-1014817 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 224, 0 |
| Conread position: | 15-414 |
| Cow position: | chr7:3180186-3180585 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-414 |
| Cow position: | chr7:3180354-3180753 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 161 |
| Conread position: | 16-403 |
| Cow position: | chr7:3180019-3180406 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 139 |
| Conread position: | 16-403 |
| Cow position: | chr7:42879206-42878819 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-412 |
| Cow position: | chr7:1015009-1015405 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-411 |
| Cow position: | chr7:42878701-42878307 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-412 |
| Cow position: | chr7:1014091-1014487 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 301 |
| Conread position: | 17-423 |
| Cow position: | chr7:1014926-1015332 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 313 |
| Conread position: | 25-323 |
| Cow position: | chr7:8278095-8278393 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 49, 64 |
| Conread position: | 25-398 |
| Cow position: | chr7:8277927-8278300 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 57, 67 |
| Conread position: | 25-404 |
| Cow position: | chr7:1438244-1438623 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 196, 186 |
| Conread position: | 25-407 |
| Cow position: | chr7:8325316-8325698 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 67 |
| Conread position: | 26-398 |
| Cow position: | chr7:11434974-11434616 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 68, 48 |
| Conread position: | 26-403 |
| Cow position: | chr7:8277592-8277969 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 64 |
| Conread position: | 28-397 |
| Cow position: | chr7:42879278-42878909 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 42 |
| Conread position: | 29-398 |
| Cow position: | chr7:1439807-1440174 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 52 |
| Conread position: | 29-403 |
| Cow position: | chr7:18390161-18390535 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 224 |
| Conread position: | 29-414 |
| Cow position: | chr7:18390413-18390798 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-321 |
| Cow position: | chr7:8243638-8243929 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 63 |
| Conread position: | 30-374 |
| Cow position: | chr7:1014273-1014617 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 30-398 |
| Cow position: | chr7:8277680-8278048 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 30-403 |
| Cow position: | chr7:8243554-8243927 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 30-403 |
| Cow position: | chr7:8277428-8277801 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 30-407 |
| Cow position: | chr7:8243219-8243596 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 52, 57 |
| Conread position: | 30-412 |
| Cow position: | chr7:18390246-18390628 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 131 |
| Conread position: | 31-403 |
| Cow position: | chr7:18389995-18390367 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 246 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 132, 146 |
| Conread position: | 32-403 |
| Cow position: | chr7:8324735-8325106 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 133, 147 |
| Conread position: | 35-407 |
| Cow position: | chr7:8242804-8243176 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 36-403 |
| Cow position: | chr7:42879354-42878987 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 12, 7 |
| Conread position: | 44-407 |
| Cow position: | chr7:8277526-8277889 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 38, 48 |
| Conread position: | 45-414 |
| Cow position: | chr7:3179712-3180081 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 200 |
| Conread position: | 80-392 |
| Cow position: | chr7:11601219-11600909 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 90-403 |
| Cow position: | chr7:1439446-1439762 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 248, 142 |
| Conread position: | 92-421 |
| Cow position: | chr7:18390140-18390469 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 243, 231 |
| Conread position: | 93-414 |
| Cow position: | chr7:18389973-18390294 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 160, 150 |
| Conread position: | 95-403 |
| Cow position: | chr7:1014668-1014976 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 108-404 |
| Cow position: | chr7:1014267-1014563 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 164-403 |
| Cow position: | chr7:11601219-11600982 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 164, 8 |
| Conread position: | 206-403 |
| Cow position: | chr7:3179705-3179902 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 104, 111 |
Show alignments to all cow chromosomes.