Cow genome map
| Conread name: | Utr2-C0001780_A02 |
| Conread position: | 1-411 |
| Cow position: | chrX:25325534-25325122 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 240 |
| Conread position: | 2-297 |
| Cow position: | chrX:29044954-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 6-403 |
| Cow position: | chrX:29045115-29044719 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 8-398 |
| Cow position: | chrX:29045284-29044891 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 8-405 |
| Cow position: | chrX:29045851-29045452 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 78 |
| Conread position: | 8-421 |
| Cow position: | chrX:25324939-25324524 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 9-398 |
| Cow position: | chrX:25310119-25310510 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 65 |
| Conread position: | 10-399 |
| Cow position: | chrX:25325021-25324630 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 324 |
| Conread position: | 10-403 |
| Cow position: | chrX:25324853-25324458 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 12-412 |
| Cow position: | chrX:25325437-25325037 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-398 |
| Cow position: | chrX:25309789-25310174 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 321 |
| Conread position: | 14-298 |
| Cow position: | chrX:25310294-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 80, 58 |
| Conread position: | 14-316 |
| Cow position: | chrX:29045675-29045373 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 233, 225 |
| Conread position: | 14-403 |
| Cow position: | chrX:25325687-25325298 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 14-406 |
| Cow position: | chrX:25325267-25324875 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-411 |
| Cow position: | chrX:25324763-25324366 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 318 |
| Conread position: | 14-411 |
| Cow position: | chrX:25325183-25324786 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 240 |
| Conread position: | 15-358 |
| Cow position: | chrX:29045758-29045415 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 308 |
| Conread position: | 15-384 |
| Cow position: | chrX:29045023-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-385 |
| Cow position: | chrX:25310211-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 15-409 |
| Cow position: | chrX:25325098-25324704 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 149 |
| Conread position: | 15-423 |
| Cow position: | chrX:25324678-25324270 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-397 |
| Cow position: | chrX:25325348-25324968 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 314 |
| Conread position: | 17-421 |
| Cow position: | chrX:25325768-25325364 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 62 |
| Conread position: | 28-404 |
| Cow position: | chrX:25309718-25310096 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 310 |
| Conread position: | 30-370 |
| Cow position: | chrX:25324579-25324239 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 46, 41 |
| Conread position: | 30-397 |
| Cow position: | chrX:13826780-13826413 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 132, 139 |
| Conread position: | 30-403 |
| Cow position: | chrX:25309974-25310347 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 41 |
| Conread position: | 30-411 |
| Cow position: | chrX:25325587-25325206 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 295 |
| Conread position: | 32-403 |
| Cow position: | chrX:13826862-13826491 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 33-412 |
| Cow position: | chrX:25325837-25325457 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 52 |
| Conread position: | 34-404 |
| Cow position: | chrX:12627693-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 41-403 |
| Cow position: | chrX:29045333-29044971 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 51-394 |
| Cow position: | chrX:14181285-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 322, 316 |
| Conread position: | 87-411 |
| Cow position: | chrX:25309695-25310019 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 91-405 |
| Cow position: | chrX:12627332-12627645 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 57, 78 |
| Conread position: | 94-405 |
| Cow position: | chrX:25325859-25325548 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 94-411 |
| Cow position: | chrX:29045361-29045047 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 55, 30 |
| Conread position: | 103-411 |
| Cow position: | chrX:29045838-29045530 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 113-398 |
| Cow position: | chrX:13826949-13826664 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 140, 135 |
Show alignments to all cow chromosomes.