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Cow genome map

           
Conread name:
           
Utr2-C0001801_A03
        

               
Conread position:
               
43-471
               

               
Cow position:
               
chr6:26728072-26728500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
200-501
               

               
Cow position:
               
chr6:17997004-17997318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
209-382
               

               
Cow position:
               
chr6:19682018-19681842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
214-454
               

               
Cow position:
               
chr6:19402139-19401907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
214-507
               

               
Cow position:
               
chr6:57571777-57571475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 150
               

               
Conread position:
               
216-429
               

               
Cow position:
               
chr6:21350736-21350953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
36, 14
               

               
Conread position:
               
216-443
               

               
Cow position:
               
chr6:16628011-16627799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
214, 24
               

               
Conread position:
               
216-491
               

               
Cow position:
               
chr6:62670167-62669876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
217-416
               

               
Cow position:
               
chr6:25614801-25614998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
30, 40
               

               
Conread position:
               
217-425
               

               
Cow position:
               
chr6:15587300-15587511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
217-508
               

               
Cow position:
               
chr6:64432223-64431932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
213, 63
               

               
Conread position:
               
218-501
               

               
Cow position:
               
chr6:38771559-38771284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
211, 46
               

               
Conread position:
               
218-504
               

               
Cow position:
               
chr6:67282171-67281893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 45
               

               
Conread position:
               
219-407
               

               
Cow position:
               
chr6:24491321-24491137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
220-490
               

               
Cow position:
               
chr6:60740300-60740026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
39, 121
               

               
Conread position:
               
221-454
               

               
Cow position:
               
chr6:30983795-30983575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
136, 9
               

               
Conread position:
               
222-493
               

               
Cow position:
               
chr6:37693035-37692760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
20, 36
               

               
Conread position:
               
224-490
               

               
Cow position:
               
chr6:1941548-1941820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
54, 9
               

               
Conread position:
               
226-456
               

               
Cow position:
               
chr6:21004961-21004730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
127, 37
               

               
Conread position:
               
226-507
               

               
Cow position:
               
chr6:120519-120242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
202, 74
               

               
Conread position:
               
231-490
               

               
Cow position:
               
chr6:51529913-51530178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
106, 71
               

               
Conread position:
               
231-508
               

               
Cow position:
               
chr6:40032455-40032186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
198, 11
               

               
Conread position:
               
232-480
               

               
Cow position:
               
chr6:66260015-66259751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
232-507
               

               
Cow position:
               
chr6:21293218-21293500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
26, 122
               

               
Conread position:
               
233-429
               

               
Cow position:
               
chr6:43906405-43906604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
233-434
               

               
Cow position:
               
chr6:16137495-16137696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
234-508
               

               
Cow position:
               
chr6:35180983-35181263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
112, 19
               

               
Conread position:
               
235-471
               

               
Cow position:
               
chr6:693877-694120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
157, 21
               

               
Conread position:
               
237-471
               

               
Cow position:
               
chr6:16091166-16090934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
194, 36
               

               
Conread position:
               
237-505
               

               
Cow position:
               
chr6:13653615-13653349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
238-470
               

               
Cow position:
               
chr6:44867275-44867505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
240-447
               

               
Cow position:
               
chr6:15266098-15266297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
240-469
               

               
Cow position:
               
chr6:12761548-12761312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
11, 17
               

               
Conread position:
               
241-439
               

               
Cow position:
               
chr6:55061137-55060933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
96, 197
               

               
Conread position:
               
242-423
               

               
Cow position:
               
chr6:18440212-18440392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
111, 58
               

               
Conread position:
               
242-429
               

               
Cow position:
               
chr6:154739-154549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
28, 70
               

               
Conread position:
               
242-430
               

               
Cow position:
               
chr6:54365062-54365249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 24
               

               
Conread position:
               
242-438
               

               
Cow position:
               
chr6:3952789-3952590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
32, 5
               

               
Conread position:
               
242-443
               

               
Cow position:
               
chr6:6168954-6168755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
23, 121
               

               
Conread position:
               
242-470
               

               
Cow position:
               
chr6:55548267-55548502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
26, 81
               

               
Conread position:
               
242-487
               

               
Cow position:
               
chr6:5601963-5601717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
74, 15
               

               
Conread position:
               
243-507
               

               
Cow position:
               
chr6:22985596-22985861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
244-414
               

               
Cow position:
               
chr6:63233778-63233610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
114, 28
               

               
Conread position:
               
244-475
               

               
Cow position:
               
chr6:33510053-33509816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
244-505
               

               
Cow position:
               
chr6:3351292-3351025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
185, 85
               

               
Conread position:
               
244-508
               

               
Cow position:
               
chr6:21475989-21475720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
245-449
               

               
Cow position:
               
chr6:47520317-47520114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
246-444
               

               
Cow position:
               
chr6:44543886-44544083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
99, 28
               

               
Conread position:
               
246-469
               

               
Cow position:
               
chr6:50504725-50504489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
29, 101
               

               
Conread position:
               
246-471
               

               
Cow position:
               
chr6:52478149-52478380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
183, 107
               

               
Conread position:
               
246-492
               

               
Cow position:
               
chr6:1475599-1475356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
247-348
               

               
Cow position:
               
chr6:37603924-37603824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
247-429
               

               
Cow position:
               
chr6:6201695-6201504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
247-434
               

               
Cow position:
               
chr6:7539836-7539649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 161
               

               
Conread position:
               
247-435
               

               
Cow position:
               
chr6:47151079-47150894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
247-508
               

               
Cow position:
               
chr6:5095281-5095550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
108, 53
               

               
Conread position:
               
247-508
               

               
Cow position:
               
chr6:23401734-23401993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
186, 93
               

               
Conread position:
               
247-508
               

               
Cow position:
               
chr6:32122152-32121902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
183, 17
               

               
Conread position:
               
248-425
               

               
Cow position:
               
chr6:35743237-35743062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
248-448
               

               
Cow position:
               
chr6:15974263-15974465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
248-482
               

               
Cow position:
               
chr6:10176038-10176282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
248-482
               

               
Cow position:
               
chr6:16287809-16288038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
115, 25
               

               
Conread position:
               
248-491
               

               
Cow position:
               
chr6:21231773-21231535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
248-492
               

               
Cow position:
               
chr6:36203082-36202831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
248-508
               

               
Cow position:
               
chr6:5330675-5330407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
26, 8
               

               
Conread position:
               
248-508
               

               
Cow position:
               
chr6:68376057-68376328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
88, 25
               

               
Conread position:
               
249-413
               

               
Cow position:
               
chr6:31928898-31928732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
249-414
               

               
Cow position:
               
chr6:49824833-49824999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
249-451
               

               
Cow position:
               
chr6:21052187-21052391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 185
               

               
Conread position:
               
249-491
               

               
Cow position:
               
chr6:53932585-53932838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
19, 122
               

               
Conread position:
               
250-444
               

               
Cow position:
               
chr6:26408248-26408439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
103, 7
               

               
Conread position:
               
250-507
               

               
Cow position:
               
chr6:38640489-38640228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
179, 51
               

               
Conread position:
               
251-385
               

               
Cow position:
               
chr6:36846360-36846493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 89
               

               
Conread position:
               
251-469
               

               
Cow position:
               
chr6:21183966-21184190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
17, 11
               

               
Conread position:
               
251-504
               

               
Cow position:
               
chr6:51580998-51581254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
64, 56
               

               
Conread position:
               
252-484
               

               
Cow position:
               
chr6:15300585-15300811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
178, 9
               

               
Conread position:
               
252-492
               

               
Cow position:
               
chr6:12669354-12669111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
96, 120
               

               
Conread position:
               
252-503
               

               
Cow position:
               
chr6:4469022-4468769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
96, 124
               

               
Conread position:
               
252-507
               

               
Cow position:
               
chr6:6965138-6965401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 47
               

               
Conread position:
               
253-429
               

               
Cow position:
               
chr6:7291568-7291395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
23, 84
               

               
Conread position:
               
253-429
               

               
Cow position:
               
chr6:24536270-24536452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
254-390
               

               
Cow position:
               
chr6:60674086-60673953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
12, 84
               

               
Conread position:
               
254-483
               

               
Cow position:
               
chr6:55646698-55646928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
142, 18
               

               
Conread position:
               
254-504
               

               
Cow position:
               
chr6:19293052-19292797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
178, 108
               

               
Conread position:
               
256-425
               

               
Cow position:
               
chr6:53811836-53811666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
92, 17
               

               
Conread position:
               
256-429
               

               
Cow position:
               
chr6:5820008-5820167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
257-408
               

               
Cow position:
               
chr6:60088224-60088376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
59, 96
               

               
Conread position:
               
257-413
               

               
Cow position:
               
chr6:16016286-16016129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
96, 121
               

               
Conread position:
               
257-429
               

               
Cow position:
               
chr6:21175585-21175417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
257-429
               

               
Cow position:
               
chr6:67187929-67187764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
257-450
               

               
Cow position:
               
chr6:16411864-16411667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
257-462
               

               
Cow position:
               
chr6:45535572-45535767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
173, 39
               

               
Conread position:
               
257-490
               

               
Cow position:
               
chr6:48436081-48435847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
96, 50
               

               
Conread position:
               
257-496
               

               
Cow position:
               
chr6:66590323-66590087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 91
               

               
Conread position:
               
257-501
               

               
Cow position:
               
chr6:65264300-65264540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
173, 75
               

               
Conread position:
               
257-506
               

               
Cow position:
               
chr6:24110536-24110277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
257-507
               

               
Cow position:
               
chr6:31535322-31535574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
173, 96
               

               
Conread position:
               
257-507
               

               
Cow position:
               
chr6:53546280-53546032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
172, 78
               

               
Conread position:
               
258-429
               

               
Cow position:
               
chr6:14913984-14914156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
258-508
               

               
Cow position:
               
chr6:46173005-46173265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 105
               

               
Conread position:
               
259-424
               

               
Cow position:
               
chr6:60778018-60777855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
90, 41
               

               
Conread position:
               
259-434
               

               
Cow position:
               
chr6:38033110-38032933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 175
               

               
Conread position:
               
259-444
               

               
Cow position:
               
chr6:22876679-22876865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
86, 174
               

               
Conread position:
               
259-454
               

               
Cow position:
               
chr6:63168517-63168715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
259-483
               

               
Cow position:
               
chr6:66947571-66947799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
259-507
               

               
Cow position:
               
chr6:61269566-61269307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
50, 100
               

               
Conread position:
               
260-492
               

               
Cow position:
               
chr6:18144450-18144201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
261-493
               

               
Cow position:
               
chr6:19754831-19755065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
74, 120
               

               
Conread position:
               
261-498
               

               
Cow position:
               
chr6:65871276-65871041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
169, 13
               

               
Conread position:
               
262-398
               

               
Cow position:
               
chr6:63762334-63762470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
262-405
               

               
Cow position:
               
chr6:57404890-57405038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
262-443
               

               
Cow position:
               
chr6:6264900-6264719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 89
               

               
Conread position:
               
262-450
               

               
Cow position:
               
chr6:36570712-36570516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
262-451
               

               
Cow position:
               
chr6:67574637-67574447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
12, 161
               

               
Conread position:
               
262-471
               

               
Cow position:
               
chr6:50771111-50771328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
262-492
               

               
Cow position:
               
chr6:21535285-21535047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
167, 14
               

               
Conread position:
               
262-494
               

               
Cow position:
               
chr6:37994450-37994223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
162, 73
               

               
Conread position:
               
262-508
               

               
Cow position:
               
chr6:611790-611546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 74
               

               
Conread position:
               
262-508
               

               
Cow position:
               
chr6:37149427-37149185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
168, 12
               

               
Conread position:
               
262-508
               

               
Cow position:
               
chr6:54490500-54490738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
153, 86
               

               
Conread position:
               
263-385
               

               
Cow position:
               
chr6:23235430-23235309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
263-413
               

               
Cow position:
               
chr6:1945198-1945051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
57, 19
               

               
Conread position:
               
263-470
               

               
Cow position:
               
chr6:12623754-12623546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
74, 87
               

               
Conread position:
               
263-493
               

               
Cow position:
               
chr6:26450544-26450323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
167, 29
               

               
Conread position:
               
263-508
               

               
Cow position:
               
chr6:36470333-36470569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
167, 46
               

               
Conread position:
               
263-508
               

               
Cow position:
               
chr6:38207240-38207495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
264-381
               

               
Cow position:
               
chr6:51862745-51862862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
264-386
               

               
Cow position:
               
chr6:38615371-38615249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
264-403
               

               
Cow position:
               
chr6:45633751-45633886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 86
               

               
Conread position:
               
264-411
               

               
Cow position:
               
chr6:66058465-66058610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
264-429
               

               
Cow position:
               
chr6:58697385-58697552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
264-431
               

               
Cow position:
               
chr6:54406557-54406722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
264-446
               

               
Cow position:
               
chr6:34463346-34463524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
264-451
               

               
Cow position:
               
chr6:24339537-24339341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
264-453
               

               
Cow position:
               
chr6:24903329-24903522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 171
               

               
Conread position:
               
264-457
               

               
Cow position:
               
chr6:32336283-32336085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 174
               

               
Conread position:
               
264-459
               

               
Cow position:
               
chr6:4699949-4699758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
264-460
               

               
Cow position:
               
chr6:43540018-43540202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
160, 86
               

               
Conread position:
               
264-471
               

               
Cow position:
               
chr6:63720433-63720231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
99, 16
               

               
Conread position:
               
264-473
               

               
Cow position:
               
chr6:18903793-18904022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
264-488
               

               
Cow position:
               
chr6:59297289-59297067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
166, 90
               

               
Conread position:
               
264-490
               

               
Cow position:
               
chr6:8966332-8966110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
166, 73
               

               
Conread position:
               
264-491
               

               
Cow position:
               
chr6:35989997-35990225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
166, 16
               

               
Conread position:
               
264-493
               

               
Cow position:
               
chr6:19446497-19446262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
264-493
               

               
Cow position:
               
chr6:65903382-65903615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
64, 75
               

               
Conread position:
               
264-498
               

               
Cow position:
               
chr6:46466063-46465826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
14, 74
               

               
Conread position:
               
264-504
               

               
Cow position:
               
chr6:32268643-32268886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
264-504
               

               
Cow position:
               
chr6:49421552-49421790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
102, 42
               

               
Conread position:
               
264-507
               

               
Cow position:
               
chr6:8125575-8125322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
19, 232
               

               
Conread position:
               
264-508
               

               
Cow position:
               
chr6:8094043-8094294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
136, 12
               

               
Conread position:
               
264-508
               

               
Cow position:
               
chr6:12338234-12337986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
138, 71
               

               
Conread position:
               
264-508
               

               
Cow position:
               
chr6:44078759-44078514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
166, 228
               

               
Conread position:
               
264-508
               

               
Cow position:
               
chr6:47884801-47885025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
188, 65
               

               
Conread position:
               
264-508
               

               
Cow position:
               
chr6:48803396-48803639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
265-413
               

               
Cow position:
               
chr6:47173794-47173932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
265-471
               

               
Cow position:
               
chr6:2547504-2547286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
34, 100
               

               
Conread position:
               
265-473
               

               
Cow position:
               
chr6:19045871-19045651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
265-476
               

               
Cow position:
               
chr6:36196445-36196236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
165, 31
               

               
Conread position:
               
265-492
               

               
Cow position:
               
chr6:43787665-43787901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
71, 151
               

               
Conread position:
               
265-492
               

               
Cow position:
               
chr6:61576048-61575835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
178, 34
               

               
Conread position:
               
265-500
               

               
Cow position:
               
chr6:19264258-19264499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
165, 31
               

               
Conread position:
               
265-501
               

               
Cow position:
               
chr6:6060332-6060572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
265-508
               

               
Cow position:
               
chr6:21467023-21467274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
265-508
               

               
Cow position:
               
chr6:56850260-56850009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
115, 90
               

               
Conread position:
               
266-381
               

               
Cow position:
               
chr6:23173290-23173179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
266-429
               

               
Cow position:
               
chr6:18447273-18447438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
266-444
               

               
Cow position:
               
chr6:33150051-33150226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
8, 32
               

               
Conread position:
               
266-447
               

               
Cow position:
               
chr6:22215220-22215408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 167
               

               
Conread position:
               
266-451
               

               
Cow position:
               
chr6:62079159-62078981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
266-471
               

               
Cow position:
               
chr6:15305811-15305602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
96, 10
               

               
Conread position:
               
266-491
               

               
Cow position:
               
chr6:66434196-66433960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
266-492
               

               
Cow position:
               
chr6:21061649-21061871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
164, 69
               

               
Conread position:
               
266-508
               

               
Cow position:
               
chr6:16102949-16103199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
13, 114
               

               
Conread position:
               
266-508
               

               
Cow position:
               
chr6:58370989-58370751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
267-493
               

               
Cow position:
               
chr6:33450737-33450960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
164, 21
               

               
Conread position:
               
268-434
               

               
Cow position:
               
chr6:45094818-45094648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
69, 168
               

               
Conread position:
               
269-413
               

               
Cow position:
               
chr6:8726916-8726773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
83, 91
               

               
Conread position:
               
269-470
               

               
Cow position:
               
chr6:38853417-38853627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
269-470
               

               
Cow position:
               
chr6:41376008-41375804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
161, 11
               

               
Conread position:
               
269-488
               

               
Cow position:
               
chr6:24781312-24781541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
75, 130
               

               
Conread position:
               
269-499
               

               
Cow position:
               
chr6:49398390-49398616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
161, 68
               

               
Conread position:
               
269-508
               

               
Cow position:
               
chr6:57089443-57089193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
162, 240
               

               
Conread position:
               
269-508
               

               
Cow position:
               
chr6:60118381-60118146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
161, 70
               

               
Conread position:
               
270-423
               

               
Cow position:
               
chr6:43770664-43770813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
271-413
               

               
Cow position:
               
chr6:66302370-66302510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
43, 77
               

               
Conread position:
               
271-454
               

               
Cow position:
               
chr6:36939111-36938923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
86, 160
               

               
Conread position:
               
271-508
               

               
Cow position:
               
chr6:2585177-2584938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
159, 11
               

               
Conread position:
               
272-408
               

               
Cow position:
               
chr6:59759405-59759271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
272-429
               

               
Cow position:
               
chr6:2014362-2014208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
272-429
               

               
Cow position:
               
chr6:39358107-39358261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
272-445
               

               
Cow position:
               
chr6:48278659-48278824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
272-471
               

               
Cow position:
               
chr6:36643251-36643461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
76, 35
               

               
Conread position:
               
272-487
               

               
Cow position:
               
chr6:23353792-23353566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 78
               

               
Conread position:
               
272-493
               

               
Cow position:
               
chr6:10399672-10399895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
77, 122
               

               
Conread position:
               
272-507
               

               
Cow position:
               
chr6:15243497-15243251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
272-508
               

               
Cow position:
               
chr6:15243075-15242829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
72, 234
               

               
Conread position:
               
273-395
               

               
Cow position:
               
chr6:29775853-29775725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
273-400
               

               
Cow position:
               
chr6:65831598-65831469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
273-406
               

               
Cow position:
               
chr6:34076398-34076269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
273-409
               

               
Cow position:
               
chr6:11262976-11262846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
273-413
               

               
Cow position:
               
chr6:14383911-14383771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
87, 120
               

               
Conread position:
               
273-413
               

               
Cow position:
               
chr6:24514299-24514447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
273-413
               

               
Cow position:
               
chr6:26155380-26155244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
273-413
               

               
Cow position:
               
chr6:26764587-26764732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
273-413
               

               
Cow position:
               
chr6:34423225-34423363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
273-413
               

               
Cow position:
               
chr6:47989661-47989521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
273-413
               

               
Cow position:
               
chr6:50883444-50883580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
273-413
               

               
Cow position:
               
chr6:54828085-54828227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
273-423
               

               
Cow position:
               
chr6:12099455-12099601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
273-424
               

               
Cow position:
               
chr6:42035005-42034857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
273-428
               

               
Cow position:
               
chr6:35341952-35342099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
273-428
               

               
Cow position:
               
chr6:54840265-54840427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
273-429
               

               
Cow position:
               
chr6:8688615-8688767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
273-429
               

               
Cow position:
               
chr6:19996850-19996694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
72, 88
               

               
Conread position:
               
273-429
               

               
Cow position:
               
chr6:21083306-21083461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
273-429
               

               
Cow position:
               
chr6:35984899-35985057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
273-429
               

               
Cow position:
               
chr6:36537128-36537281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
273-429
               

               
Cow position:
               
chr6:50577750-50577600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
273-429
               

               
Cow position:
               
chr6:60186416-60186583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
273-429
               

               
Cow position:
               
chr6:61110017-61109867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
273-435
               

               
Cow position:
               
chr6:54821069-54820906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 160
               

               
Conread position:
               
273-438
               

               
Cow position:
               
chr6:19936333-19936498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
80, 107
               

               
Conread position:
               
273-438
               

               
Cow position:
               
chr6:62724793-62724627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
73, 108
               

               
Conread position:
               
273-444
               

               
Cow position:
               
chr6:8186952-8187124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 160
               

               
Conread position:
               
273-444
               

               
Cow position:
               
chr6:45159820-45159992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 154
               

               
Conread position:
               
273-444
               

               
Cow position:
               
chr6:57467834-57467662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 160
               

               
Conread position:
               
273-450
               

               
Cow position:
               
chr6:62437652-62437474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 160
               

               
Conread position:
               
273-451
               

               
Cow position:
               
chr6:15172791-15172624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
146, 52
               

               
Conread position:
               
273-451
               

               
Cow position:
               
chr6:23381431-23381610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
80, 173
               

               
Conread position:
               
273-451
               

               
Cow position:
               
chr6:36225345-36225167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
72, 85
               

               
Conread position:
               
273-451
               

               
Cow position:
               
chr6:38610209-38610027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
104, 163
               

               
Conread position:
               
273-451
               

               
Cow position:
               
chr6:49686055-49685875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
72, 160
               

               
Conread position:
               
273-451
               

               
Cow position:
               
chr6:63251686-63251864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
80, 124
               

               
Conread position:
               
273-452
               

               
Cow position:
               
chr6:34569651-34569461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
64, 109
               

               
Conread position:
               
273-456
               

               
Cow position:
               
chr6:50682064-50682244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 134
               

               
Conread position:
               
273-457
               

               
Cow position:
               
chr6:5445903-5445720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
85, 148
               

               
Conread position:
               
273-462
               

               
Cow position:
               
chr6:28561933-28562121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 105
               

               
Conread position:
               
273-462
               

               
Cow position:
               
chr6:66979106-66978909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
273-465
               

               
Cow position:
               
chr6:3937022-3936821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
273-466
               

               
Cow position:
               
chr6:10163909-10163709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 166
               

               
Conread position:
               
273-466
               

               
Cow position:
               
chr6:24468164-24468360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
158, 77
               

               
Conread position:
               
273-466
               

               
Cow position:
               
chr6:60273776-60273975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
137, 14
               

               
Conread position:
               
273-469
               

               
Cow position:
               
chr6:15937617-15937822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
273-469
               

               
Cow position:
               
chr6:44194321-44194516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
154, 27
               

               
Conread position:
               
273-469
               

               
Cow position:
               
chr6:66839428-66839231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
157, 66
               

               
Conread position:
               
273-470
               

               
Cow position:
               
chr6:41014739-41014941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 162
               

               
Conread position:
               
273-471
               

               
Cow position:
               
chr6:1866966-1866763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
34, 77
               

               
Conread position:
               
273-471
               

               
Cow position:
               
chr6:55282057-55282263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
273-473
               

               
Cow position:
               
chr6:48097368-48097575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
131, 27
               

               
Conread position:
               
273-474
               

               
Cow position:
               
chr6:44636279-44636471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
178, 27
               

               
Conread position:
               
273-477
               

               
Cow position:
               
chr6:56581819-56582029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 110
               

               
Conread position:
               
273-478
               

               
Cow position:
               
chr6:41226612-41226807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
157, 28
               

               
Conread position:
               
273-481
               

               
Cow position:
               
chr6:25772984-25773194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
75, 59
               

               
Conread position:
               
273-484
               

               
Cow position:
               
chr6:9219498-9219290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
178, 78
               

               
Conread position:
               
273-484
               

               
Cow position:
               
chr6:32126287-32126074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
157, 78
               

               
Conread position:
               
273-486
               

               
Cow position:
               
chr6:28155938-28156143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
159, 28
               

               
Conread position:
               
273-487
               

               
Cow position:
               
chr6:2078581-2078800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
157, 65
               

               
Conread position:
               
273-487
               

               
Cow position:
               
chr6:9302488-9302702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
157, 61
               

               
Conread position:
               
273-487
               

               
Cow position:
               
chr6:42483650-42483430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
164, 152
               

               
Conread position:
               
273-488
               

               
Cow position:
               
chr6:59015344-59015554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 63
               

               
Conread position:
               
273-490
               

               
Cow position:
               
chr6:19225157-19225362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
170, 27
               

               
Conread position:
               
273-491
               

               
Cow position:
               
chr6:33302631-33302414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
84, 159
               

               
Conread position:
               
273-492
               

               
Cow position:
               
chr6:18954857-18955066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
142, 28
               

               
Conread position:
               
273-492
               

               
Cow position:
               
chr6:33206964-33206751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
157, 64
               

               
Conread position:
               
273-492
               

               
Cow position:
               
chr6:38441415-38441185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
63, 127
               

               
Conread position:
               
273-496
               

               
Cow position:
               
chr6:30024112-30023891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
157, 27
               

               
Conread position:
               
273-497
               

               
Cow position:
               
chr6:21470197-21470424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
157, 68
               

               
Conread position:
               
273-498
               

               
Cow position:
               
chr6:47356061-47355828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 52
               

               
Conread position:
               
273-500
               

               
Cow position:
               
chr6:58725602-58725372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
156, 78
               

               
Conread position:
               
273-501
               

               
Cow position:
               
chr6:53841268-53841505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
273-503
               

               
Cow position:
               
chr6:57320363-57320585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
179, 83
               

               
Conread position:
               
273-503
               

               
Cow position:
               
chr6:67069580-67069815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
132, 27
               

               
Conread position:
               
273-503
               

               
Cow position:
               
chr6:67451137-67451371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 16
               

               
Conread position:
               
273-504
               

               
Cow position:
               
chr6:17068420-17068649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
158, 27
               

               
Conread position:
               
273-504
               

               
Cow position:
               
chr6:67451429-67451647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
139, 64
               

               
Conread position:
               
273-505
               

               
Cow position:
               
chr6:23696229-23695999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
157, 33
               

               
Conread position:
               
273-506
               

               
Cow position:
               
chr6:12965089-12964849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 25
               

               
Conread position:
               
273-506
               

               
Cow position:
               
chr6:13367517-13367282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
157, 74
               

               
Conread position:
               
273-506
               

               
Cow position:
               
chr6:13565320-13565083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
157, 7
               

               
Conread position:
               
273-506
               

               
Cow position:
               
chr6:17313973-17313732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
70, 131
               

               
Conread position:
               
273-506
               

               
Cow position:
               
chr6:23532881-23532653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
160, 39
               

               
Conread position:
               
273-507
               

               
Cow position:
               
chr6:5609207-5609449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
63, 186
               

               
Conread position:
               
273-507
               

               
Cow position:
               
chr6:32287866-32287635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
112, 66
               

               
Conread position:
               
273-507
               

               
Cow position:
               
chr6:57545994-57546226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 27
               

               
Conread position:
               
273-507
               

               
Cow position:
               
chr6:62056846-62056609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
157, 60
               

               
Conread position:
               
273-508
               

               
Cow position:
               
chr6:1704029-1703801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
87, 21
               

               
Conread position:
               
273-508
               

               
Cow position:
               
chr6:7801165-7801397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 28
               

               
Conread position:
               
273-508
               

               
Cow position:
               
chr6:28148499-28148249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 126
               

               
Conread position:
               
273-508
               

               
Cow position:
               
chr6:47246017-47245778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
99, 204
               

               
Conread position:
               
273-508
               

               
Cow position:
               
chr6:57079661-57079417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
274-409
               

               
Cow position:
               
chr6:62849155-62849025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
274-413
               

               
Cow position:
               
chr6:21346919-21347055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
274-414
               

               
Cow position:
               
chr6:61883939-61884080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
79, 95
               

               
Conread position:
               
274-425
               

               
Cow position:
               
chr6:29485317-29485167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
274-428
               

               
Cow position:
               
chr6:32006222-32006374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
274-434
               

               
Cow position:
               
chr6:19563245-19563408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 161
               

               
Conread position:
               
274-444
               

               
Cow position:
               
chr6:26054666-26054839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 161
               

               
Conread position:
               
274-454
               

               
Cow position:
               
chr6:54889838-54889655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
71, 109
               

               
Conread position:
               
274-457
               

               
Cow position:
               
chr6:31847010-31847189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
172, 73
               

               
Conread position:
               
274-460
               

               
Cow position:
               
chr6:53711637-53711444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
274-464
               

               
Cow position:
               
chr6:30825543-30825728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
156, 14
               

               
Conread position:
               
274-471
               

               
Cow position:
               
chr6:7128170-7128372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
155, 72
               

               
Conread position:
               
274-471
               

               
Cow position:
               
chr6:32866987-32867187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
155, 52
               

               
Conread position:
               
274-471
               

               
Cow position:
               
chr6:60850933-60850731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
156, 65
               

               
Conread position:
               
274-473
               

               
Cow position:
               
chr6:53024577-53024775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
155, 63
               

               
Conread position:
               
274-476
               

               
Cow position:
               
chr6:51933773-51933580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
163, 49
               

               
Conread position:
               
274-490
               

               
Cow position:
               
chr6:10225416-10225635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 95
               

               
Conread position:
               
274-492
               

               
Cow position:
               
chr6:55417299-55417519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 63
               

               
Conread position:
               
274-494
               

               
Cow position:
               
chr6:54127587-54127807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
155, 62
               

               
Conread position:
               
274-502
               

               
Cow position:
               
chr6:10039960-10039724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 225
               

               
Conread position:
               
274-503
               

               
Cow position:
               
chr6:53460337-53460568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
274-506
               

               
Cow position:
               
chr6:10105749-10105983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
156, 26
               

               
Conread position:
               
274-507
               

               
Cow position:
               
chr6:17414216-17414452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
156, 26
               

               
Conread position:
               
274-507
               

               
Cow position:
               
chr6:18117815-18118055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
12, 81
               

               
Conread position:
               
274-507
               

               
Cow position:
               
chr6:47575125-47574903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
156, 57
               

               
Conread position:
               
274-508
               

               
Cow position:
               
chr6:11247002-11246760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
79, 104
               

               
Conread position:
               
274-508
               

               
Cow position:
               
chr6:46558288-46558050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
153, 79
               

               
Conread position:
               
274-508
               

               
Cow position:
               
chr6:67951191-67950949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
275-471
               

               
Cow position:
               
chr6:45690386-45690579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
155, 8
               

               
Conread position:
               
275-471
               

               
Cow position:
               
chr6:46859938-46860136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
154, 5
               

               
Conread position:
               
275-490
               

               
Cow position:
               
chr6:143145-143362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
155, 69
               

               
Conread position:
               
275-501
               

               
Cow position:
               
chr6:17794522-17794762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 226
               

               
Conread position:
               
275-507
               

               
Cow position:
               
chr6:60143966-60144202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
152, 75
               

               
Conread position:
               
275-508
               

               
Cow position:
               
chr6:59602982-59603214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
155, 64
               

               
Conread position:
               
277-444
               

               
Cow position:
               
chr6:35171845-35171671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 140
               

               
Conread position:
               
277-472
               

               
Cow position:
               
chr6:63182516-63182331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
277-504
               

               
Cow position:
               
chr6:63066068-63065824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
277-508
               

               
Cow position:
               
chr6:48469238-48468996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
278-428
               

               
Cow position:
               
chr6:28559770-28559618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
278-438
               

               
Cow position:
               
chr6:48379381-48379542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
61, 155
               

               
Conread position:
               
278-483
               

               
Cow position:
               
chr6:410989-411188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 73
               

               
Conread position:
               
278-507
               

               
Cow position:
               
chr6:39093975-39093745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
149, 53
               

               
Conread position:
               
279-448
               

               
Cow position:
               
chr6:8369653-8369481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
279-493
               

               
Cow position:
               
chr6:48010295-48010513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 102
               

               
Conread position:
               
280-410
               

               
Cow position:
               
chr6:30688281-30688413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
280-444
               

               
Cow position:
               
chr6:15058603-15058442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
280-500
               

               
Cow position:
               
chr6:4383702-4383483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
150, 59
               

               
Conread position:
               
280-501
               

               
Cow position:
               
chr6:56986420-56986648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
280-507
               

               
Cow position:
               
chr6:27219394-27219176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
281-451
               

               
Cow position:
               
chr6:61644629-61644800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
71, 152
               

               
Conread position:
               
281-454
               

               
Cow position:
               
chr6:41733862-41733687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 152
               

               
Conread position:
               
281-460
               

               
Cow position:
               
chr6:14471592-14471409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 152
               

               
Conread position:
               
281-465
               

               
Cow position:
               
chr6:2758009-2757829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
149, 60
               

               
Conread position:
               
281-473
               

               
Cow position:
               
chr6:54133038-54132844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
148, 44
               

               
Conread position:
               
282-429
               

               
Cow position:
               
chr6:40682442-40682586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
282-429
               

               
Cow position:
               
chr6:68816396-68816246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
282-490
               

               
Cow position:
               
chr6:5113821-5114037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
282-492
               

               
Cow position:
               
chr6:37395177-37395391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
114, 65
               

               
Conread position:
               
283-469
               

               
Cow position:
               
chr6:1870972-1871165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
285-414
               

               
Cow position:
               
chr6:78911-79036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
285-471
               

               
Cow position:
               
chr6:60517061-60516857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
285-504
               

               
Cow position:
               
chr6:51835621-51835398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 45
               

               
Conread position:
               
285-508
               

               
Cow position:
               
chr6:19696032-19695807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 208
               

               
Conread position:
               
285-508
               

               
Cow position:
               
chr6:47305565-47305335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 91
               

               
Conread position:
               
285-508
               

               
Cow position:
               
chr6:61523981-61524210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
144, 208
               

               
Conread position:
               
287-423
               

               
Cow position:
               
chr6:28483238-28483102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
288-492
               

               
Cow position:
               
chr6:9718697-9718902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
142, 45
               

               
Conread position:
               
289-444
               

               
Cow position:
               
chr6:35842879-35842724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 91
               

               
Conread position:
               
291-422
               

               
Cow position:
               
chr6:53235436-53235566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
292-464
               

               
Cow position:
               
chr6:36920759-36920936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
52, 63
               

               
Conread position:
               
292-508
               

               
Cow position:
               
chr6:38641710-38641491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
295-446
               

               
Cow position:
               
chr6:47698816-47698666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
295-487
               

               
Cow position:
               
chr6:26915541-26915346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
132, 67
               

               
Conread position:
               
298-492
               

               
Cow position:
               
chr6:61168975-61168765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
299-488
               

               
Cow position:
               
chr6:40774125-40774318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 39
               

               
Conread position:
               
312-501
               

               
Cow position:
               
chr6:40713313-40713502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
119, 47
               

               
Conread position:
               
337-508
               

               
Cow position:
               
chr6:10224363-10224198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
115, 90
               

               
Conread position:
               
337-508
               

               
Cow position:
               
chr6:65259320-65259490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
339-506
               

               
Cow position:
               
chr6:582103-582273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
94, 162
               

               
Conread position:
               
339-507
               

               
Cow position:
               
chr6:46331088-46330917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
91, 20
               

               
Conread position:
               
339-508
               

               
Cow position:
               
chr6:37199368-37199533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
117, 52
               

               
Conread position:
               
340-450
               

               
Cow position:
               
chr6:47676181-47676069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
340-491
               

               
Cow position:
               
chr6:54864491-54864644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 136
               

               
Conread position:
               
340-507
               

               
Cow position:
               
chr6:47799462-47799289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
84, 156
               

               
Conread position:
               
341-507
               

               
Cow position:
               
chr6:67214917-67214744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
370-508
               

               
Cow position:
               
chr6:38614951-38614813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 61
               
Show alignments to all cow chromosomes.