Cow genome map

Conread name: Utr2-C0001805_L19

Conread position: 2-288
Cow position: chr3:67698366-67698085 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 190
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 106

Conread position: 2-313
Cow position: chr3:25945183-25944862 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 34, 168

Conread position: 2-356
Cow position: chr3:30008818-30009168 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 236
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 34, 203

Conread position: 2-367
Cow position: chr3:25690883-25690515 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 42

Conread position: 2-379
Cow position: chr3:49460836-49461219 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 29

Conread position: 3-379
Cow position: chr3:67929171-67929548 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 132

Conread position: 8-414
Cow position: chr3:38864208-38863793 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 265

Conread position: 9-178
Cow position: chr3:69785543-69785714 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 86, 151

Conread position: 9-188
Cow position: chr3:47753307-47753126 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 137, 0

Conread position: 9-188
Cow position: chr3:75608579-75608399 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 128
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 135, 76

Conread position: 9-241
Cow position: chr3:55177665-55177903 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 174
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 131, 0

Conread position: 9-252
Cow position: chr3:53508692-53508460 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 128, 0

Conread position: 9-290
Cow position: chr3:74079556-74079835 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 59

Conread position: 9-333
Cow position: chr3:17447534-17447843 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 9-361
Cow position: chr3:73461047-73460715 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 46

Conread position: 9-371
Cow position: chr3:54946212-54945851 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 258

Conread position: 9-375
Cow position: chr3:27274609-27274262 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 62

Conread position: 9-376
Cow position: chr3:74234267-74233921 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 115

Conread position: 9-378
Cow position: chr3:74601195-74600836 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 32

Conread position: 9-379
Cow position: chr3:26681733-26682075 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 71

Conread position: 9-379
Cow position: chr3:68707932-68708283 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 9-379
Cow position: chr3:68881041-68881391 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 9-388
Cow position: chr3:67704627-67704249 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 261

Conread position: 9-426
Cow position: chr3:68145762-68146189 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 270
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 219, 136

Conread position: 10-260
Cow position: chr3:32787539-32787291 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 164
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 219, 13

Conread position: 11-209
Cow position: chr3:63177562-63177360 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 137, 0

Conread position: 13-366
Cow position: chr3:7337708-7338042 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 6

Conread position: 13-378
Cow position: chr3:66292100-66292459 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 6

Conread position: 14-296
Cow position: chr3:53094856-53095138 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 140, 9

Conread position: 15-311
Cow position: chr3:10896897-10896615 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 199
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 128, 0

Conread position: 16-389
Cow position: chr3:2396715-2397073 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 71

Conread position: 18-375
Cow position: chr3:64280858-64281214 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 248

Conread position: 19-158
Cow position: chr3:82629387-82629248 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 19-379
Cow position: chr3:48296769-48296429 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 239
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 28-259
Cow position: chr3:48810583-48810805 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 28-388
Cow position: chr3:12711853-12712214 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 235

Conread position: 29-362
Cow position: chr3:54903627-54903304 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 233
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 64

Conread position: 30-259
Cow position: chr3:59035102-59034863 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 30-296
Cow position: chr3:46479093-46479356 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 175
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 81, 86

Conread position: 32-243
Cow position: chr3:3883757-3883971 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 123, 119

Conread position: 32-344
Cow position: chr3:116247-115961 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 221
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 197, 122

Conread position: 32-375
Cow position: chr3:62789117-62789482 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 32-379
Cow position: chr3:17957526-17957185 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 238

Conread position: 32-379
Cow position: chr3:70565680-70566020 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 93

Conread position: 33-187
Cow position: chr3:3472097-3471941 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 103, 83

Conread position: 33-222
Cow position: chr3:84175766-84175957 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 131
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 33-231
Cow position: chr3:78093332-78093524 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 96, 0

Conread position: 33-267
Cow position: chr3:26874647-26874414 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 116, 55

Conread position: 33-279
Cow position: chr3:20677785-20678020 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 43, 0

Conread position: 33-279
Cow position: chr3:74502268-74502507 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 166
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 195, 120

Conread position: 33-311
Cow position: chr3:4319768-4319497 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 191
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 195, 109

Conread position: 33-346
Cow position: chr3:18686963-18686668 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 211
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 104, 122

Conread position: 33-356
Cow position: chr3:52608239-52607925 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 144

Conread position: 33-373
Cow position: chr3:2506422-2506755 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 17

Conread position: 33-375
Cow position: chr3:67744571-67744906 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 96

Conread position: 33-379
Cow position: chr3:12674986-12675321 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 233
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 34

Conread position: 33-379
Cow position: chr3:39969805-39970154 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 237

Conread position: 33-379
Cow position: chr3:48363129-48362801 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 55

Conread position: 33-379
Cow position: chr3:53739128-53739473 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 115

Conread position: 33-379
Cow position: chr3:72676148-72675805 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 110

Conread position: 33-383
Cow position: chr3:27545762-27546119 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 246
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 112, 93

Conread position: 33-395
Cow position: chr3:73467688-73467323 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 183

Conread position: 33-402
Cow position: chr3:26553658-26554015 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 258
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 107, 80

Conread position: 33-421
Cow position: chr3:58767320-58766933 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 263
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 106, 145

Conread position: 34-314
Cow position: chr3:76713269-76713538 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 95, 56

Conread position: 34-362
Cow position: chr3:59474178-59473847 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 226
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 106, 156

Conread position: 34-379
Cow position: chr3:5097263-5096921 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 234

Conread position: 34-379
Cow position: chr3:54781947-54782294 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 257
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 60, 147

Conread position: 34-379
Cow position: chr3:55189697-55190032 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 185

Conread position: 34-379
Cow position: chr3:65413222-65413557 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 227

Conread position: 34-379
Cow position: chr3:73709103-73708772 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 109

Conread position: 34-384
Cow position: chr3:71161854-71161507 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 7

Conread position: 39-215
Cow position: chr3:22165365-22165544 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 113, 40

Conread position: 39-325
Cow position: chr3:74119378-74119673 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 196
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 55, 238

Conread position: 39-347
Cow position: chr3:63316183-63315882 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 207
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 79, 74

Conread position: 39-366
Cow position: chr3:14632932-14633255 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 230
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 112, 101

Conread position: 39-367
Cow position: chr3:45279517-45279187 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 227
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 78, 69

Conread position: 39-367
Cow position: chr3:70899942-70899630 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 58

Conread position: 39-377
Cow position: chr3:55835770-55836108 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 229

Conread position: 39-379
Cow position: chr3:53113226-53112886 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 224

Conread position: 40-292
Cow position: chr3:59884018-59884271 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 176
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 8, 221

Conread position: 41-178
Cow position: chr3:31350055-31350193 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 118, 0

Conread position: 41-189
Cow position: chr3:10668833-10668979 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 133, 35

Conread position: 41-197
Cow position: chr3:31361474-31361312 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 76

Conread position: 41-201
Cow position: chr3:12670566-12670726 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 99, 17

Conread position: 41-204
Cow position: chr3:64196875-64196710 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 113, 0

Conread position: 41-210
Cow position: chr3:15950864-15951031 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 105, 0

Conread position: 41-211
Cow position: chr3:59604892-59604730 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 107, 32

Conread position: 41-234
Cow position: chr3:1785196-1785385 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 105, 113

Conread position: 41-237
Cow position: chr3:74584257-74584072 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 100, 0

Conread position: 41-240
Cow position: chr3:79196808-79196610 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 116, 129

Conread position: 41-266
Cow position: chr3:34669684-34669903 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 108, 67

Conread position: 41-269
Cow position: chr3:76267926-76268160 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 106, 215

Conread position: 41-275
Cow position: chr3:76922614-76922846 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 182
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 116, 75

Conread position: 41-277
Cow position: chr3:22232605-22232837 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 99, 49

Conread position: 41-280
Cow position: chr3:54506756-54506521 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 184
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 104, 120

Conread position: 41-312
Cow position: chr3:83845962-83845690 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 193
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 97, 34

Conread position: 41-325
Cow position: chr3:15506497-15506220 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 30

Conread position: 41-335
Cow position: chr3:13507517-13507226 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 156

Conread position: 41-344
Cow position: chr3:23444839-23445136 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 217
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 88, 142

Conread position: 41-347
Cow position: chr3:11712014-11711704 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 219
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 101, 229

Conread position: 41-356
Cow position: chr3:82019790-82020102 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 168

Conread position: 41-358
Cow position: chr3:56476731-56476423 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 228
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 105, 134

Conread position: 41-375
Cow position: chr3:210368-210044 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 243
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 33, 27

Conread position: 41-375
Cow position: chr3:13353410-13353082 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 35

Conread position: 41-375
Cow position: chr3:16752210-16752525 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 36

Conread position: 41-375
Cow position: chr3:53222062-53221741 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 95

Conread position: 41-375
Cow position: chr3:64010763-64011093 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 235
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 71, 194

Conread position: 41-377
Cow position: chr3:70334646-70334983 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 234
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 215, 99

Conread position: 41-378
Cow position: chr3:18459479-18459801 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 86

Conread position: 41-378
Cow position: chr3:24852548-24852868 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 109, 49

Conread position: 41-379
Cow position: chr3:2630823-2630516 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 242
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 284, 49

Conread position: 41-379
Cow position: chr3:10958191-10958510 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 204

Conread position: 41-379
Cow position: chr3:15159080-15158759 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 240
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 155, 86

Conread position: 41-379
Cow position: chr3:23169017-23169352 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 50

Conread position: 41-379
Cow position: chr3:24935414-24935074 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 238
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 220, 101

Conread position: 41-379
Cow position: chr3:26219002-26219343 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 172

Conread position: 41-379
Cow position: chr3:53150380-53150045 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 109

Conread position: 41-379
Cow position: chr3:53572703-53573032 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 240
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 99, 169

Conread position: 41-379
Cow position: chr3:55271996-55272322 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 206

Conread position: 41-379
Cow position: chr3:58968854-58969174 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 102

Conread position: 41-379
Cow position: chr3:59101876-59101553 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 229
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 113, 45

Conread position: 41-379
Cow position: chr3:65800634-65800313 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 34

Conread position: 41-379
Cow position: chr3:69750662-69750983 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 21

Conread position: 41-379
Cow position: chr3:70896097-70895764 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 114

Conread position: 41-379
Cow position: chr3:71497089-71497428 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 162

Conread position: 41-379
Cow position: chr3:75711355-75711037 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 41-382
Cow position: chr3:4461435-4461774 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 72

Conread position: 41-388
Cow position: chr3:74533398-74533057 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 148

Conread position: 41-391
Cow position: chr3:3738530-3738197 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 43-266
Cow position: chr3:19792952-19792717 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 161
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 95, 0

Conread position: 43-356
Cow position: chr3:83455104-83455410 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 71

Conread position: 45-206
Cow position: chr3:75090521-75090359 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 103, 46

Conread position: 45-266
Cow position: chr3:26982103-26981889 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 183, 85

Conread position: 45-285
Cow position: chr3:83797789-83798030 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 162
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 112, 97

Conread position: 45-304
Cow position: chr3:83727206-83727457 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 175
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 183, 95

Conread position: 45-311
Cow position: chr3:45211346-45211082 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 188
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 95, 125

Conread position: 45-360
Cow position: chr3:3556590-3556282 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 214
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 150, 85

Conread position: 45-362
Cow position: chr3:57754431-57754749 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 225
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 99, 128

Conread position: 45-366
Cow position: chr3:29596435-29596124 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 226
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 73, 65

Conread position: 45-366
Cow position: chr3:60933462-60933146 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 233
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 85, 144

Conread position: 45-367
Cow position: chr3:13301805-13302126 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 230
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 189, 92

Conread position: 45-370
Cow position: chr3:10347396-10347081 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 31

Conread position: 45-373
Cow position: chr3:31419737-31419425 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 223
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 178, 59

Conread position: 45-373
Cow position: chr3:48851925-48852242 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 230
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 184, 95

Conread position: 45-375
Cow position: chr3:14263438-14263114 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 225
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 103, 63

Conread position: 45-375
Cow position: chr3:15954040-15954355 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 231
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 112, 180

Conread position: 45-375
Cow position: chr3:49482671-49482982 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 225
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 187, 95

Conread position: 45-378
Cow position: chr3:2216413-2216079 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 224

Conread position: 45-378
Cow position: chr3:11987374-11987049 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 233
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 96, 113

Conread position: 45-379
Cow position: chr3:7566372-7566701 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 232
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 84, 158

Conread position: 45-379
Cow position: chr3:17694960-17695288 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 231
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 95, 58

Conread position: 45-379
Cow position: chr3:31206921-31206590 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 234
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 95, 107

Conread position: 45-379
Cow position: chr3:49650433-49650098 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 219

Conread position: 45-379
Cow position: chr3:53384235-53384565 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 167

Conread position: 45-379
Cow position: chr3:53592644-53592982 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 86

Conread position: 45-379
Cow position: chr3:54049986-54050301 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 245
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 98, 52

Conread position: 45-379
Cow position: chr3:72777283-72776958 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 240
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 150, 93

Conread position: 45-379
Cow position: chr3:77188483-77188164 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 220
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 126, 145

Conread position: 45-379
Cow position: chr3:79591846-79592171 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 83

Conread position: 45-384
Cow position: chr3:14465661-14465991 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 246
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 73, 65

Conread position: 45-408
Cow position: chr3:79220903-79220535 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 251
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 63, 221

Conread position: 45-416
Cow position: chr3:15228778-15229140 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 252
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 212, 94

Conread position: 46-178
Cow position: chr3:478756-478888 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 108, 30

Conread position: 46-193
Cow position: chr3:19626462-19626612 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 123
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 103, 0

Conread position: 46-196
Cow position: chr3:3316772-3316918 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 46-197
Cow position: chr3:32409256-32409104 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 96, 0

Conread position: 46-232
Cow position: chr3:73820325-73820511 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 94, 70

Conread position: 46-235
Cow position: chr3:46541785-46541972 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 96, 0

Conread position: 46-258
Cow position: chr3:55109569-55109782 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 108, 200

Conread position: 46-267
Cow position: chr3:19585907-19585686 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 31

Conread position: 46-267
Cow position: chr3:55819802-55819571 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 93, 0

Conread position: 46-270
Cow position: chr3:60264672-60264896 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 172
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 108, 147

Conread position: 46-271
Cow position: chr3:50069807-50069587 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 94, 58

Conread position: 46-288
Cow position: chr3:23105318-23105560 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 222

Conread position: 46-313
Cow position: chr3:78896691-78896433 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 188, 101

Conread position: 46-322
Cow position: chr3:56612411-56612132 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 48, 226

Conread position: 46-337
Cow position: chr3:8061170-8060893 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 96, 34

Conread position: 46-356
Cow position: chr3:75080807-75080508 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 46-359
Cow position: chr3:56523402-56523688 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 220
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 22, 0

Conread position: 46-362
Cow position: chr3:73395160-73394851 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 58

Conread position: 46-364
Cow position: chr3:80818761-80818462 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 214
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 71, 67

Conread position: 46-369
Cow position: chr3:61224700-61225007 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 226
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 100, 131

Conread position: 46-373
Cow position: chr3:38691362-38691681 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 95

Conread position: 46-373
Cow position: chr3:49327988-49327668 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 221

Conread position: 46-375
Cow position: chr3:14552919-14552600 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 91

Conread position: 46-375
Cow position: chr3:20437612-20437923 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 225
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 104, 0

Conread position: 46-375
Cow position: chr3:45881942-45881631 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 95

Conread position: 46-375
Cow position: chr3:56059855-56059529 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 223

Conread position: 46-379
Cow position: chr3:17936795-17937121 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 119

Conread position: 46-379
Cow position: chr3:26920952-26920615 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 62

Conread position: 46-379
Cow position: chr3:50768723-50768397 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 46-379
Cow position: chr3:74878545-74878886 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 240
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 188, 101

Conread position: 46-379
Cow position: chr3:78945798-78946121 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 45

Conread position: 46-379
Cow position: chr3:80072173-80071835 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 46-391
Cow position: chr3:57624508-57624168 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 93

Conread position: 46-426
Cow position: chr3:59621604-59621969 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 259
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 283, 96

Conread position: 47-232
Cow position: chr3:73237239-73237053 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 106, 150

Conread position: 47-256
Cow position: chr3:48072839-48073039 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 96, 0

Conread position: 47-259
Cow position: chr3:54100683-54100891 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 181, 89

Conread position: 47-340
Cow position: chr3:60265211-60265479 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 213
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 149, 33

Conread position: 47-347
Cow position: chr3:78092468-78092755 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 109

Conread position: 47-375
Cow position: chr3:59799291-59798976 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 218

Conread position: 47-376
Cow position: chr3:32585193-32584879 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 92

Conread position: 47-379
Cow position: chr3:37186870-37186554 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 232
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 103, 95

Conread position: 47-379
Cow position: chr3:80565009-80564681 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 75

Conread position: 48-241
Cow position: chr3:70333923-70334115 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 135
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 75, 66

Conread position: 48-266
Cow position: chr3:79092350-79092570 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 58, 96

Conread position: 48-279
Cow position: chr3:75687395-75687624 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 70, 65

Conread position: 48-285
Cow position: chr3:54373818-54374052 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 185, 94

Conread position: 48-288
Cow position: chr3:38035548-38035786 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 165
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 67, 56

Conread position: 48-303
Cow position: chr3:55712482-55712220 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 186
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 90, 227

Conread position: 48-303
Cow position: chr3:57760540-57760293 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 180, 92

Conread position: 48-304
Cow position: chr3:27696936-27697189 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 188
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 185, 97

Conread position: 48-330
Cow position: chr3:21547058-21547334 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 191
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 180, 92

Conread position: 48-346
Cow position: chr3:43233548-43233255 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 65

Conread position: 48-349
Cow position: chr3:79950183-79950484 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 196
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 70, 65

Conread position: 48-362
Cow position: chr3:57577739-57577430 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 176, 92

Conread position: 48-370
Cow position: chr3:525388-525081 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 82

Conread position: 48-372
Cow position: chr3:31298121-31298435 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 224
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 181, 82

Conread position: 48-375
Cow position: chr3:17222100-17222422 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 113

Conread position: 48-377
Cow position: chr3:29891367-29891697 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 232
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 66, 56

Conread position: 48-378
Cow position: chr3:9663130-9663468 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 237
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 63, 68

Conread position: 48-378
Cow position: chr3:56582890-56582562 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 239
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 55, 151

Conread position: 48-379
Cow position: chr3:15388261-15387929 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 237
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 46, 116

Conread position: 48-379
Cow position: chr3:23471417-23471750 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 151

Conread position: 48-379
Cow position: chr3:49679174-49678840 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 221
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 70, 65

Conread position: 48-379
Cow position: chr3:53270872-53270544 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 218

Conread position: 48-379
Cow position: chr3:72473957-72473625 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 91, 226

Conread position: 48-379
Cow position: chr3:78077227-78076907 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 91

Conread position: 48-379
Cow position: chr3:79902538-79902221 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 234
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 181, 91

Conread position: 48-405
Cow position: chr3:35852429-35852773 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 254
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 27, 23

Conread position: 49-195
Cow position: chr3:44625122-44625268 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 108, 28

Conread position: 49-198
Cow position: chr3:9117067-9116920 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 36, 0

Conread position: 49-379
Cow position: chr3:6690041-6689709 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 120, 91

Conread position: 49-379
Cow position: chr3:30180127-30179800 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 237
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 65, 206

Conread position: 50-362
Cow position: chr3:72391122-72390816 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 64

Conread position: 50-367
Cow position: chr3:39066372-39066063 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 223
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 94, 106

Conread position: 50-378
Cow position: chr3:17456228-17456550 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 228
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 183, 93

Conread position: 50-379
Cow position: chr3:66900693-66901024 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 238
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 104, 90

Conread position: 50-384
Cow position: chr3:55970547-55970220 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 211

Conread position: 51-247
Cow position: chr3:32183979-32184177 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 51-379
Cow position: chr3:73443053-73443369 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 29

Conread position: 53-313
Cow position: chr3:72663506-72663246 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 171
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 91, 104

Conread position: 54-347
Cow position: chr3:44932552-44932259 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 214

Conread position: 54-392
Cow position: chr3:83815751-83816088 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 177

Conread position: 57-313
Cow position: chr3:35005809-35005562 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 61, 54

Conread position: 77-245
Cow position: chr3:75105070-75105239 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 69, 150

Conread position: 93-366
Cow position: chr3:17450942-17451203 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 89

Conread position: 100-426
Cow position: chr3:83201535-83201858 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 80

Conread position: 101-379
Cow position: chr3:19789125-19789401 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 95

Conread position: 103-379
Cow position: chr3:77496816-77496535 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 169

Show alignments to all cow chromosomes.