Cow genome map

Conread name: Utr2-C0001805_L19

Conread position: 2-204
Cow position: chrX:13147120-13146918 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 140
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 34, 47

Conread position: 2-263
Cow position: chrX:40320547-40320283 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 173
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 22, 137

Conread position: 2-313
Cow position: chrX:22921461-22921148 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 213
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 29

Conread position: 2-343
Cow position: chrX:47484124-47484467 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 242
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 6

Conread position: 2-379
Cow position: chrX:23563650-23564029 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 29

Conread position: 2-379
Cow position: chrX:31948794-31949163 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 198

Conread position: 2-379
Cow position: chrX:34662706-34663071 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 253
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 22, 40

Conread position: 2-379
Cow position: chrX:48010745-48010362 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 261
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 34, 163

Conread position: 3-379
Cow position: chrX:40826611-40826979 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 258
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 21, 41

Conread position: 8-253
Cow position: chrX:33539303-33539053 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 177, 118

Conread position: 8-379
Cow position: chrX:34532652-34532299 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 11

Conread position: 9-233
Cow position: chrX:1466294-1466069 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 137, 0

Conread position: 9-253
Cow position: chrX:42927692-42927931 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 131, 0

Conread position: 9-269
Cow position: chrX:45670354-45670100 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 173
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 66, 123

Conread position: 9-338
Cow position: chrX:31312161-31311835 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 179

Conread position: 9-367
Cow position: chrX:1503459-1503119 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 243
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 128, 82

Conread position: 9-367
Cow position: chrX:10959263-10959623 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 247
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 122, 149

Conread position: 9-375
Cow position: chrX:35543019-35542663 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 82

Conread position: 9-377
Cow position: chrX:45968280-45967932 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 244
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 123, 116

Conread position: 9-379
Cow position: chrX:38006639-38007000 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 13

Conread position: 9-379
Cow position: chrX:40269624-40269244 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 260

Conread position: 9-385
Cow position: chrX:32431756-32431389 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 246
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 6, 33

Conread position: 9-388
Cow position: chrX:878248-878612 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 186

Conread position: 9-388
Cow position: chrX:30543152-30543523 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 61

Conread position: 11-313
Cow position: chrX:34792182-34792476 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 12-261
Cow position: chrX:27119824-27119579 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 168
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 106, 8

Conread position: 13-211
Cow position: chrX:4152904-4153105 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 124, 6

Conread position: 13-378
Cow position: chrX:42171168-42171530 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 35

Conread position: 28-198
Cow position: chrX:19469393-19469563 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 28-220
Cow position: chrX:22115204-22115396 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 183, 114

Conread position: 28-379
Cow position: chrX:35224409-35224070 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 127

Conread position: 28-384
Cow position: chrX:25815788-25816133 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 249
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 18, 8

Conread position: 32-356
Cow position: chrX:45846210-45845887 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 72

Conread position: 32-377
Cow position: chrX:21642374-21642708 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 239
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 0

Conread position: 32-379
Cow position: chrX:14883846-14884194 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 236

Conread position: 33-265
Cow position: chrX:40685220-40685455 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 116, 0

Conread position: 33-285
Cow position: chrX:21566515-21566261 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 173
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 107, 232

Conread position: 33-336
Cow position: chrX:42235416-42235722 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 211
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 100, 225

Conread position: 33-347
Cow position: chrX:161520-161221 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 213
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 113, 133

Conread position: 33-362
Cow position: chrX:7278019-7277707 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 213
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 104, 0

Conread position: 33-367
Cow position: chrX:29601720-29602053 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 229

Conread position: 33-367
Cow position: chrX:46072709-46073042 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 224

Conread position: 33-373
Cow position: chrX:11082514-11082839 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 238
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 42, 37

Conread position: 33-379
Cow position: chrX:23513909-23514250 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 64

Conread position: 33-379
Cow position: chrX:38094412-38094757 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 39

Conread position: 33-379
Cow position: chrX:38936808-38936469 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 236
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 111, 194

Conread position: 33-384
Cow position: chrX:27393918-27394251 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 113

Conread position: 33-385
Cow position: chrX:42381004-42381338 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 98

Conread position: 34-296
Cow position: chrX:39415263-39415518 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 176
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 116, 97

Conread position: 34-375
Cow position: chrX:17888316-17888634 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 116, 52

Conread position: 34-383
Cow position: chrX:6544361-6544020 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 42

Conread position: 34-384
Cow position: chrX:7646358-7646021 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 250
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 43, 36

Conread position: 34-424
Cow position: chrX:4825729-4826108 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 251
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 333, 29

Conread position: 35-379
Cow position: chrX:15815190-15814865 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 240
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 119, 99

Conread position: 41-178
Cow position: chrX:19394653-19394515 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 104, 118

Conread position: 41-184
Cow position: chrX:11325997-11326143 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 41-190
Cow position: chrX:22392884-22393035 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 107, 0

Conread position: 41-195
Cow position: chrX:35985918-35985764 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 98, 49

Conread position: 41-196
Cow position: chrX:46429719-46429875 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 105, 148

Conread position: 41-198
Cow position: chrX:169446-169602 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 41-207
Cow position: chrX:12082224-12082391 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 95, 40

Conread position: 41-222
Cow position: chrX:18272958-18273139 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 143
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 104, 35

Conread position: 41-232
Cow position: chrX:29050347-29050156 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 97, 39

Conread position: 41-235
Cow position: chrX:47345427-47345240 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 97, 0

Conread position: 41-237
Cow position: chrX:34836964-34837150 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 86, 0

Conread position: 41-252
Cow position: chrX:17949392-17949601 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 5, 68

Conread position: 41-261
Cow position: chrX:26881465-26881688 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 99, 0

Conread position: 41-266
Cow position: chrX:19273607-19273848 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 111, 0

Conread position: 41-266
Cow position: chrX:43115250-43115026 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 169
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 109, 45

Conread position: 41-277
Cow position: chrX:41871167-41870938 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 173
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 99, 153

Conread position: 41-288
Cow position: chrX:34314124-34313889 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 186
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 105, 70

Conread position: 41-291
Cow position: chrX:11084964-11085204 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 170
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 189, 14

Conread position: 41-297
Cow position: chrX:21986191-21986446 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 105, 60

Conread position: 41-300
Cow position: chrX:20584428-20584166 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 116

Conread position: 41-304
Cow position: chrX:42855558-42855292 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 174
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 111, 144

Conread position: 41-306
Cow position: chrX:34504948-34505213 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 23, 156

Conread position: 41-311
Cow position: chrX:35885627-35885893 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 179
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 127, 96

Conread position: 41-320
Cow position: chrX:46433591-46433310 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 190
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 141, 116

Conread position: 41-332
Cow position: chrX:36068115-36067835 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 185

Conread position: 41-338
Cow position: chrX:47362523-47362802 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 105, 141

Conread position: 41-345
Cow position: chrX:34411946-34411643 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 205

Conread position: 41-346
Cow position: chrX:4515790-4515469 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 225
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 11

Conread position: 41-362
Cow position: chrX:34554823-34554511 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 219
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 185, 94

Conread position: 41-362
Cow position: chrX:39126426-39126123 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 210
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 98, 0

Conread position: 41-366
Cow position: chrX:6414141-6413827 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 27

Conread position: 41-368
Cow position: chrX:37574940-37574635 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 113

Conread position: 41-375
Cow position: chrX:3130672-3130353 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 224
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 91, 72

Conread position: 41-375
Cow position: chrX:17726075-17725750 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 101

Conread position: 41-375
Cow position: chrX:34503020-34502692 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 41-375
Cow position: chrX:37232507-37232181 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 86

Conread position: 41-378
Cow position: chrX:12979734-12980060 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 137

Conread position: 41-378
Cow position: chrX:13647685-13648015 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 85

Conread position: 41-378
Cow position: chrX:42469841-42470168 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 144

Conread position: 41-379
Cow position: chrX:8797349-8797016 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 45

Conread position: 41-379
Cow position: chrX:9252063-9252410 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 86

Conread position: 41-379
Cow position: chrX:11656181-11655854 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 106

Conread position: 41-379
Cow position: chrX:21064383-21064054 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 234
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 115, 99

Conread position: 41-379
Cow position: chrX:26493106-26492770 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 233
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 64, 112

Conread position: 41-379
Cow position: chrX:31436574-31436248 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 112

Conread position: 41-379
Cow position: chrX:33640075-33639739 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 231
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 110, 218

Conread position: 41-379
Cow position: chrX:38218814-38218483 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 239
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 113, 145

Conread position: 41-379
Cow position: chrX:39558249-39558580 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 14

Conread position: 41-379
Cow position: chrX:40557579-40557908 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 226

Conread position: 41-380
Cow position: chrX:7572005-7571673 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 190

Conread position: 41-388
Cow position: chrX:11073091-11073432 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 136

Conread position: 41-426
Cow position: chrX:5118398-5118798 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 138

Conread position: 41-426
Cow position: chrX:8869302-8869700 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 190

Conread position: 41-426
Cow position: chrX:37781009-37781400 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 45-227
Cow position: chrX:4296729-4296905 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 106, 0

Conread position: 45-265
Cow position: chrX:27945958-27946183 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 152
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 102, 0

Conread position: 45-324
Cow position: chrX:47165790-47166061 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 183
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 184, 111

Conread position: 45-338
Cow position: chrX:44656861-44657155 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 197
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 95, 65

Conread position: 45-349
Cow position: chrX:47300807-47301105 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 208
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 95, 110

Conread position: 45-349
Cow position: chrX:47302781-47303081 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 210
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 95, 110

Conread position: 45-352
Cow position: chrX:842253-841954 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 217
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 162, 95

Conread position: 45-352
Cow position: chrX:46587918-46587613 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 220
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 94, 217

Conread position: 45-372
Cow position: chrX:45089542-45089218 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 219
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 63, 71

Conread position: 45-373
Cow position: chrX:40183258-40183576 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 226
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 183, 94

Conread position: 45-378
Cow position: chrX:46722638-46722972 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 71

Conread position: 45-379
Cow position: chrX:2467980-2467647 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 70

Conread position: 45-379
Cow position: chrX:17231831-17231502 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 156

Conread position: 45-379
Cow position: chrX:36976047-36975717 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 94, 70

Conread position: 45-379
Cow position: chrX:38935375-38935049 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 235
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 102, 46

Conread position: 45-379
Cow position: chrX:44054898-44054569 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 183, 109

Conread position: 45-379
Cow position: chrX:45449004-45448655 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 233
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 122

Conread position: 45-379
Cow position: chrX:47344392-47344062 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 240
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 94, 166

Conread position: 45-379
Cow position: chrX:48652625-48652959 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 227
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 184, 134

Conread position: 45-380
Cow position: chrX:6278402-6278739 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 224

Conread position: 45-383
Cow position: chrX:47967703-47967363 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 235
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 95, 218

Conread position: 45-384
Cow position: chrX:15485538-15485865 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 231
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 184, 52

Conread position: 45-388
Cow position: chrX:47873240-47873582 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 229
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 95, 110

Conread position: 46-146
Cow position: chrX:2936052-2935952 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 46-186
Cow position: chrX:27306549-27306407 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 100, 0

Conread position: 46-189
Cow position: chrX:44095355-44095209 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 46-203
Cow position: chrX:20957333-20957186 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 46-236
Cow position: chrX:38560654-38560462 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 92, 120

Conread position: 46-284
Cow position: chrX:27685344-27685107 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 16, 218

Conread position: 46-325
Cow position: chrX:29680166-29680438 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 201
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 266, 101

Conread position: 46-356
Cow position: chrX:38853292-38852988 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 30

Conread position: 46-364
Cow position: chrX:37910540-37910235 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 224
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 102, 131

Conread position: 46-365
Cow position: chrX:11633777-11633460 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 96, 220

Conread position: 46-373
Cow position: chrX:6690165-6690474 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 225
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 178, 94

Conread position: 46-373
Cow position: chrX:34402095-34401771 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 79

Conread position: 46-375
Cow position: chrX:5919587-5919243 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 156

Conread position: 46-379
Cow position: chrX:7695844-7695529 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 102, 27

Conread position: 46-379
Cow position: chrX:9201643-9201315 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 32

Conread position: 46-379
Cow position: chrX:9650929-9651278 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 114

Conread position: 46-379
Cow position: chrX:13913170-13912847 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 147

Conread position: 46-379
Cow position: chrX:28865911-28866224 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 234
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 72, 40

Conread position: 46-379
Cow position: chrX:38549542-38549216 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 98

Conread position: 46-379
Cow position: chrX:45414209-45414532 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 93

Conread position: 46-384
Cow position: chrX:34377037-34376720 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 46-392
Cow position: chrX:17795076-17794740 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 141

Conread position: 46-392
Cow position: chrX:27680493-27680158 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 153

Conread position: 46-427
Cow position: chrX:43730129-43730508 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 270
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 295, 58

Conread position: 47-194
Cow position: chrX:25328522-25328659 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 47-264
Cow position: chrX:23562726-23562512 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 106, 0

Conread position: 47-325
Cow position: chrX:47186230-47186498 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 190
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 164, 90

Conread position: 47-367
Cow position: chrX:24365727-24366052 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 227
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 96, 202

Conread position: 47-375
Cow position: chrX:20339798-20340119 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 66

Conread position: 47-379
Cow position: chrX:33493870-33493543 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 29

Conread position: 47-384
Cow position: chrX:19690309-19689981 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 230
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 73, 105

Conread position: 48-229
Cow position: chrX:11317875-11318055 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 94, 0

Conread position: 48-238
Cow position: chrX:12095679-12095871 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 135
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 66, 111

Conread position: 48-266
Cow position: chrX:45875485-45875266 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 176, 94

Conread position: 48-281
Cow position: chrX:41027252-41027020 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 91, 184

Conread position: 48-309
Cow position: chrX:8917487-8917231 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 185, 105

Conread position: 48-313
Cow position: chrX:4279025-4279280 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 70, 65

Conread position: 48-326
Cow position: chrX:36061253-36060973 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 189
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 99, 222

Conread position: 48-345
Cow position: chrX:33000998-33000706 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 23

Conread position: 48-345
Cow position: chrX:40809786-40809489 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 66, 84

Conread position: 48-351
Cow position: chrX:29544784-29545083 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 65

Conread position: 48-357
Cow position: chrX:27175091-27174785 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 226
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 70, 38

Conread position: 48-362
Cow position: chrX:42492430-42492729 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 224
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 179, 91

Conread position: 48-371
Cow position: chrX:18650948-18651266 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 205
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 304, 207

Conread position: 48-374
Cow position: chrX:11856523-11856202 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 143

Conread position: 48-375
Cow position: chrX:21672653-21672323 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 100

Conread position: 48-375
Cow position: chrX:31294479-31294770 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 230
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 91, 0

Conread position: 48-375
Cow position: chrX:31489613-31489284 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 119, 95

Conread position: 48-375
Cow position: chrX:42247089-42247412 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 185

Conread position: 48-378
Cow position: chrX:22822139-22821816 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 159, 91

Conread position: 48-379
Cow position: chrX:3654701-3654372 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 229
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 105, 91

Conread position: 48-379
Cow position: chrX:21004777-21004452 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 233
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 103, 137

Conread position: 48-379
Cow position: chrX:23583654-23583326 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 111

Conread position: 48-379
Cow position: chrX:25035289-25035619 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 97

Conread position: 48-379
Cow position: chrX:34543877-34543555 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 128

Conread position: 48-379
Cow position: chrX:35258638-35258960 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 213
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 115, 93

Conread position: 48-379
Cow position: chrX:45403732-45404066 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 222

Conread position: 48-379
Cow position: chrX:46032634-46032950 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 228
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 179, 93

Conread position: 48-384
Cow position: chrX:20697516-20697845 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 245
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 66, 55

Conread position: 48-386
Cow position: chrX:46532402-46532748 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 182

Conread position: 48-426
Cow position: chrX:15231567-15231942 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 250
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 185, 103

Conread position: 50-223
Cow position: chrX:5135432-5135607 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 50-274
Cow position: chrX:31729533-31729307 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 152
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 67, 60

Conread position: 50-375
Cow position: chrX:33855128-33855461 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 216

Conread position: 50-379
Cow position: chrX:5872408-5872081 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 89

Conread position: 50-384
Cow position: chrX:30133227-30133561 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 237
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 98, 220

Conread position: 51-296
Cow position: chrX:12405291-12405539 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 103, 89

Conread position: 51-296
Cow position: chrX:18425848-18426090 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 164
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 98, 111

Conread position: 51-356
Cow position: chrX:29542127-29542427 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 216

Conread position: 56-379
Cow position: chrX:42507563-42507879 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 222
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 146, 81

Conread position: 58-371
Cow position: chrX:13785280-13785591 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 18

Conread position: 77-379
Cow position: chrX:26875817-26876113 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 190

Conread position: 98-375
Cow position: chrX:34991079-34990813 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 90

Conread position: 163-426
Cow position: chrX:16689475-16689216 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 175
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 70, 109

Conread position: 267-424
Cow position: chrX:24318492-24318332 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 49, 0

Show alignments to all cow chromosomes.