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Cow genome map

           
Conread name:
           
Utr2-C0001807_J23
        

               
Conread position:
               
42-301
               

               
Cow position:
               
chr11:62663005-62663265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
14, 88
               

               
Conread position:
               
43-249
               

               
Cow position:
               
chr11:8421897-8422099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
44-246
               

               
Cow position:
               
chr11:46314237-46314032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
122, 10
               

               
Conread position:
               
44-292
               

               
Cow position:
               
chr11:17559342-17559106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
47-280
               

               
Cow position:
               
chr11:20117299-20117061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
48-287
               

               
Cow position:
               
chr11:31228173-31227943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
51-298
               

               
Cow position:
               
chr11:49149271-49149009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
54-253
               

               
Cow position:
               
chr11:36847388-36847182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
54-298
               

               
Cow position:
               
chr11:18508807-18509061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
54-301
               

               
Cow position:
               
chr11:36194515-36194261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 146
               

               
Conread position:
               
55-280
               

               
Cow position:
               
chr11:49396308-49396538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
40, 143
               

               
Conread position:
               
55-293
               

               
Cow position:
               
chr11:78820367-78820126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
44, 130
               

               
Conread position:
               
56-282
               

               
Cow position:
               
chr11:36092703-36092931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
114, 87
               

               
Conread position:
               
58-228
               

               
Cow position:
               
chr11:4602367-4602192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
58-301
               

               
Cow position:
               
chr11:19591782-19592026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
99, 56
               

               
Conread position:
               
58-301
               

               
Cow position:
               
chr11:36112622-36112390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
115, 8
               

               
Conread position:
               
59-301
               

               
Cow position:
               
chr11:39060394-39060635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 9
               

               
Conread position:
               
60-301
               

               
Cow position:
               
chr11:34646807-34646556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
61-255
               

               
Cow position:
               
chr11:13684510-13684698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
61-301
               

               
Cow position:
               
chr11:42067076-42066828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
62-199
               

               
Cow position:
               
chr11:80824115-80823978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
12, 95
               

               
Conread position:
               
62-254
               

               
Cow position:
               
chr11:63849740-63849938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
95, 139
               

               
Conread position:
               
62-260
               

               
Cow position:
               
chr11:18777383-18777591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
103, 192
               

               
Conread position:
               
62-269
               

               
Cow position:
               
chr11:77241910-77241704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
101, 19
               

               
Conread position:
               
62-288
               

               
Cow position:
               
chr11:17517610-17517378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
62-301
               

               
Cow position:
               
chr11:67911955-67912184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
63-298
               

               
Cow position:
               
chr11:71111107-71110861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
102, 64
               

               
Conread position:
               
63-301
               

               
Cow position:
               
chr11:36182901-36182657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
15, 72
               

               
Conread position:
               
64-239
               

               
Cow position:
               
chr11:4653051-4653226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
64-245
               

               
Cow position:
               
chr11:42236072-42236259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
64-279
               

               
Cow position:
               
chr11:75915194-75914982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
31, 38
               

               
Conread position:
               
64-297
               

               
Cow position:
               
chr11:55053070-55052842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
64-301
               

               
Cow position:
               
chr11:8670226-8669977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
64-301
               

               
Cow position:
               
chr11:30192385-30192142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
101, 27
               

               
Conread position:
               
64-301
               

               
Cow position:
               
chr11:32254006-32254250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
64-301
               

               
Cow position:
               
chr11:45742576-45742344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 27
               

               
Conread position:
               
65-202
               

               
Cow position:
               
chr11:71146539-71146399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
65-268
               

               
Cow position:
               
chr11:58186079-58185882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
65-298
               

               
Cow position:
               
chr11:70251122-70250884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
65-301
               

               
Cow position:
               
chr11:42884579-42884819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
66-255
               

               
Cow position:
               
chr11:4411667-4411856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
56, 39
               

               
Conread position:
               
66-260
               

               
Cow position:
               
chr11:81065844-81066042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
66-288
               

               
Cow position:
               
chr11:56115144-56114918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
66-289
               

               
Cow position:
               
chr11:79884680-79884467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
67-237
               

               
Cow position:
               
chr11:65431726-65431549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
67-238
               

               
Cow position:
               
chr11:81340339-81340511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 87
               

               
Conread position:
               
67-267
               

               
Cow position:
               
chr11:42206621-42206422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
98, 47
               

               
Conread position:
               
67-298
               

               
Cow position:
               
chr11:80556425-80556192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 181
               

               
Conread position:
               
67-301
               

               
Cow position:
               
chr11:77013978-77013751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
68-267
               

               
Cow position:
               
chr11:25968649-25968852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
89, 169
               

               
Conread position:
               
68-274
               

               
Cow position:
               
chr11:12555100-12555312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
68-280
               

               
Cow position:
               
chr11:77758556-77758773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
68-283
               

               
Cow position:
               
chr11:19578138-19577926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
85, 46
               

               
Conread position:
               
68-285
               

               
Cow position:
               
chr11:48315196-48315414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
95, 23
               

               
Conread position:
               
68-288
               

               
Cow position:
               
chr11:10563209-10562988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
68-296
               

               
Cow position:
               
chr11:66572288-66572525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
92, 198
               

               
Conread position:
               
68-297
               

               
Cow position:
               
chr11:5961511-5961274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
68-298
               

               
Cow position:
               
chr11:15772509-15772742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
89, 198
               

               
Conread position:
               
68-298
               

               
Cow position:
               
chr11:63866457-63866689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
91, 210
               

               
Conread position:
               
68-299
               

               
Cow position:
               
chr11:49255615-49255373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 158
               

               
Conread position:
               
68-300
               

               
Cow position:
               
chr11:2575704-2575936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
68-300
               

               
Cow position:
               
chr11:5433470-5433236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
117, 132
               

               
Conread position:
               
68-300
               

               
Cow position:
               
chr11:30894799-30895036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
68-300
               

               
Cow position:
               
chr11:34121405-34121166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 133
               

               
Conread position:
               
68-300
               

               
Cow position:
               
chr11:53773886-53773649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
68-301
               

               
Cow position:
               
chr11:20762054-20761814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
102, 19
               

               
Conread position:
               
68-301
               

               
Cow position:
               
chr11:30370301-30370076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
103, 39
               

               
Conread position:
               
68-301
               

               
Cow position:
               
chr11:40395641-40395405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
68-301
               

               
Cow position:
               
chr11:41549134-41549366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
103, 28
               

               
Conread position:
               
68-301
               

               
Cow position:
               
chr11:46746840-46746598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
103, 77
               

               
Conread position:
               
68-301
               

               
Cow position:
               
chr11:56288748-56288512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
103, 23
               

               
Conread position:
               
68-301
               

               
Cow position:
               
chr11:58173821-58173592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
68-301
               

               
Cow position:
               
chr11:65826549-65826784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
26, 47
               

               
Conread position:
               
68-301
               

               
Cow position:
               
chr11:75874568-75874788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
68-302
               

               
Cow position:
               
chr11:8496237-8495998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
103, 138
               

               
Conread position:
               
69-179
               

               
Cow position:
               
chr11:50197308-50197420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
69-182
               

               
Cow position:
               
chr11:68870462-68870575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
69-234
               

               
Cow position:
               
chr11:70821248-70821078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 132
               

               
Conread position:
               
69-249
               

               
Cow position:
               
chr11:62483772-62483943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
69-252
               

               
Cow position:
               
chr11:80400048-80399865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
100, 22
               

               
Conread position:
               
69-254
               

               
Cow position:
               
chr11:32800830-32800639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
69-256
               

               
Cow position:
               
chr11:26057444-26057639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
69-267
               

               
Cow position:
               
chr11:21590590-21590385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
92, 22
               

               
Conread position:
               
69-268
               

               
Cow position:
               
chr11:23220563-23220362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
98, 70
               

               
Conread position:
               
69-268
               

               
Cow position:
               
chr11:81143341-81143541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
102, 193
               

               
Conread position:
               
69-277
               

               
Cow position:
               
chr11:64781291-64781077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
69-279
               

               
Cow position:
               
chr11:6094201-6094414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
69-283
               

               
Cow position:
               
chr11:47314218-47314447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 199
               

               
Conread position:
               
69-284
               

               
Cow position:
               
chr11:63478567-63478361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
19, 89
               

               
Conread position:
               
69-284
               

               
Cow position:
               
chr11:87171874-87172093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
87, 24
               

               
Conread position:
               
69-292
               

               
Cow position:
               
chr11:84764218-84764012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
69-296
               

               
Cow position:
               
chr11:68883922-68883690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
102, 22
               

               
Conread position:
               
69-298
               

               
Cow position:
               
chr11:4662858-4663077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
69-298
               

               
Cow position:
               
chr11:8437486-8437724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
69-298
               

               
Cow position:
               
chr11:30172502-30172279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
69-298
               

               
Cow position:
               
chr11:70206522-70206290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
17, 158
               

               
Conread position:
               
69-299
               

               
Cow position:
               
chr11:36978010-36977775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
81, 138
               

               
Conread position:
               
69-300
               

               
Cow position:
               
chr11:27404868-27405102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
102, 155
               

               
Conread position:
               
69-300
               

               
Cow position:
               
chr11:62239944-62239713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
100, 81
               

               
Conread position:
               
69-301
               

               
Cow position:
               
chr11:7874343-7874105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
69-301
               

               
Cow position:
               
chr11:13863898-13864138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
69-301
               

               
Cow position:
               
chr11:13940389-13940157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
96, 22
               

               
Conread position:
               
69-301
               

               
Cow position:
               
chr11:15369595-15369354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 125
               

               
Conread position:
               
69-301
               

               
Cow position:
               
chr11:17889524-17889764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
96, 147
               

               
Conread position:
               
69-301
               

               
Cow position:
               
chr11:18915212-18914992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
221, 22
               

               
Conread position:
               
69-301
               

               
Cow position:
               
chr11:24438016-24438258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
91, 132
               

               
Conread position:
               
69-301
               

               
Cow position:
               
chr11:33347996-33348219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
69-301
               

               
Cow position:
               
chr11:62620578-62620343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
69-301
               

               
Cow position:
               
chr11:80616419-80616210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
69-301
               

               
Cow position:
               
chr11:83926234-83926016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
89, 50
               

               
Conread position:
               
69-301
               

               
Cow position:
               
chr11:84385437-84385670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
88, 49
               

               
Conread position:
               
69-302
               

               
Cow position:
               
chr11:16315077-16314838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
69-302
               

               
Cow position:
               
chr11:17278478-17278706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
69-302
               

               
Cow position:
               
chr11:33639418-33639181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 145
               

               
Conread position:
               
69-302
               

               
Cow position:
               
chr11:34968410-34968648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
96, 159
               

               
Conread position:
               
69-302
               

               
Cow position:
               
chr11:48672917-48672680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
96, 212
               

               
Conread position:
               
69-302
               

               
Cow position:
               
chr11:52132617-52132854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 139
               

               
Conread position:
               
69-302
               

               
Cow position:
               
chr11:55744672-55744433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
69-302
               

               
Cow position:
               
chr11:70756676-70756448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
104, 22
               

               
Conread position:
               
69-302
               

               
Cow position:
               
chr11:77745044-77745286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
70-224
               

               
Cow position:
               
chr11:13397310-13397465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
70-233
               

               
Cow position:
               
chr11:24551595-24551425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
20, 157
               

               
Conread position:
               
70-238
               

               
Cow position:
               
chr11:18484000-18484159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
70-259
               

               
Cow position:
               
chr11:31866780-31866590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 21
               

               
Conread position:
               
70-260
               

               
Cow position:
               
chr11:6319927-6320125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
70-260
               

               
Cow position:
               
chr11:44176795-44176604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 61
               

               
Conread position:
               
70-268
               

               
Cow position:
               
chr11:80370315-80370114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 21
               

               
Conread position:
               
70-272
               

               
Cow position:
               
chr11:57767391-57767186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
79, 183
               

               
Conread position:
               
70-275
               

               
Cow position:
               
chr11:49210615-49210829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
86, 122
               

               
Conread position:
               
70-276
               

               
Cow position:
               
chr11:19578820-19579024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
70-283
               

               
Cow position:
               
chr11:9699054-9699260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
70-283
               

               
Cow position:
               
chr11:71805963-71806162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 101
               

               
Conread position:
               
70-286
               

               
Cow position:
               
chr11:66099655-66099881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
70-292
               

               
Cow position:
               
chr11:3175871-3175649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
70-295
               

               
Cow position:
               
chr11:45350308-45350539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 116
               

               
Conread position:
               
70-297
               

               
Cow position:
               
chr11:4225292-4225068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
18, 173
               

               
Conread position:
               
70-297
               

               
Cow position:
               
chr11:62742446-62742672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
93, 183
               

               
Conread position:
               
70-298
               

               
Cow position:
               
chr11:31413659-31413423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
70-298
               

               
Cow position:
               
chr11:32710716-32710484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
101, 24
               

               
Conread position:
               
70-299
               

               
Cow position:
               
chr11:21508213-21507971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
70-299
               

               
Cow position:
               
chr11:36914363-36914598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
94, 137
               

               
Conread position:
               
70-300
               

               
Cow position:
               
chr11:15467647-15467429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
70-300
               

               
Cow position:
               
chr11:48296227-48296001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
70-301
               

               
Cow position:
               
chr11:23407662-23407431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
70-301
               

               
Cow position:
               
chr11:25119734-25119964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
101, 113
               

               
Conread position:
               
70-301
               

               
Cow position:
               
chr11:26066985-26067217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 58
               

               
Conread position:
               
70-301
               

               
Cow position:
               
chr11:27913488-27913251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
70-301
               

               
Cow position:
               
chr11:28078691-28078470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
70-301
               

               
Cow position:
               
chr11:30165713-30165477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
95, 218
               

               
Conread position:
               
70-301
               

               
Cow position:
               
chr11:44032208-44031972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
209, 49
               

               
Conread position:
               
70-301
               

               
Cow position:
               
chr11:58927779-58927550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
70-302
               

               
Cow position:
               
chr11:33286753-33286991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
101, 135
               

               
Conread position:
               
70-302
               

               
Cow position:
               
chr11:35665357-35665597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 148
               

               
Conread position:
               
70-302
               

               
Cow position:
               
chr11:55636022-55636260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
23, 138
               

               
Conread position:
               
70-302
               

               
Cow position:
               
chr11:81300419-81300655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
95, 135
               

               
Conread position:
               
71-199
               

               
Cow position:
               
chr11:63547020-63546890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
71-238
               

               
Cow position:
               
chr11:33271630-33271460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
71-241
               

               
Cow position:
               
chr11:62102244-62102421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
71-258
               

               
Cow position:
               
chr11:36361440-36361634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
71-268
               

               
Cow position:
               
chr11:77227731-77227538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
113, 84
               

               
Conread position:
               
71-269
               

               
Cow position:
               
chr11:12528083-12528280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
97, 48
               

               
Conread position:
               
71-283
               

               
Cow position:
               
chr11:37099972-37100184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
71-288
               

               
Cow position:
               
chr11:30476196-30475972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
68, 42
               

               
Conread position:
               
71-288
               

               
Cow position:
               
chr11:46884580-46884353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
71-291
               

               
Cow position:
               
chr11:54428821-54428596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 135
               

               
Conread position:
               
71-296
               

               
Cow position:
               
chr11:2084346-2084115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
71-298
               

               
Cow position:
               
chr11:17990037-17990267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
113, 20
               

               
Conread position:
               
71-298
               

               
Cow position:
               
chr11:29308783-29308550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
97, 136
               

               
Conread position:
               
71-300
               

               
Cow position:
               
chr11:2925107-2925328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
71-300
               

               
Cow position:
               
chr11:27248687-27248461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
71-300
               

               
Cow position:
               
chr11:30830420-30830646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
71-301
               

               
Cow position:
               
chr11:2907327-2907556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
35, 148
               

               
Conread position:
               
71-301
               

               
Cow position:
               
chr11:16801777-16801985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
71-301
               

               
Cow position:
               
chr11:52690324-52690553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
90, 60
               

               
Conread position:
               
71-301
               

               
Cow position:
               
chr11:55334120-55333876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
71-301
               

               
Cow position:
               
chr11:64105194-64104966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
125, 106
               

               
Conread position:
               
71-301
               

               
Cow position:
               
chr11:66939391-66939626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
90, 20
               

               
Conread position:
               
71-302
               

               
Cow position:
               
chr11:7460429-7460649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
107, 37
               

               
Conread position:
               
71-302
               

               
Cow position:
               
chr11:39462820-39462589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
71-302
               

               
Cow position:
               
chr11:63975335-63975095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 139
               

               
Conread position:
               
72-222
               

               
Cow position:
               
chr11:32586924-32587078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
72-253
               

               
Cow position:
               
chr11:37565068-37564888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
72-253
               

               
Cow position:
               
chr11:53651840-53651655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 47
               

               
Conread position:
               
72-254
               

               
Cow position:
               
chr11:44614967-44615154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
72-259
               

               
Cow position:
               
chr11:35732883-35733075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
72-260
               

               
Cow position:
               
chr11:44620153-44619962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
93, 46
               

               
Conread position:
               
72-271
               

               
Cow position:
               
chr11:79666058-79666265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 54
               

               
Conread position:
               
72-274
               

               
Cow position:
               
chr11:7571821-7571618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
72-294
               

               
Cow position:
               
chr11:35536775-35536561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
102, 46
               

               
Conread position:
               
72-297
               

               
Cow position:
               
chr11:70422395-70422623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 47
               

               
Conread position:
               
72-298
               

               
Cow position:
               
chr11:14378642-14378409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
96, 30
               

               
Conread position:
               
72-298
               

               
Cow position:
               
chr11:36521080-36520844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
93, 161
               

               
Conread position:
               
72-298
               

               
Cow position:
               
chr11:37435786-37436017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 215
               

               
Conread position:
               
72-300
               

               
Cow position:
               
chr11:80923127-80923353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
89, 19
               

               
Conread position:
               
72-301
               

               
Cow position:
               
chr11:897864-897640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
72-301
               

               
Cow position:
               
chr11:13500210-13499984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
99, 49
               

               
Conread position:
               
72-301
               

               
Cow position:
               
chr11:13592940-13592702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
72-301
               

               
Cow position:
               
chr11:32260731-32260501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 141
               

               
Conread position:
               
72-301
               

               
Cow position:
               
chr11:81763070-81762829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 47
               

               
Conread position:
               
72-302
               

               
Cow position:
               
chr11:59024153-59024394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
85, 170
               

               
Conread position:
               
72-302
               

               
Cow position:
               
chr11:85571605-85571839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
73-217
               

               
Cow position:
               
chr11:31525457-31525600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
73-222
               

               
Cow position:
               
chr11:63977254-63977103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
73-248
               

               
Cow position:
               
chr11:50629469-50629296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
73-249
               

               
Cow position:
               
chr11:76896174-76896356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
73-253
               

               
Cow position:
               
chr11:15591281-15591460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
73-255
               

               
Cow position:
               
chr11:68570182-68570368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 64
               

               
Conread position:
               
73-258
               

               
Cow position:
               
chr11:38223595-38223778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
73-260
               

               
Cow position:
               
chr11:34778244-34778436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
73-267
               

               
Cow position:
               
chr11:25721807-25721993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
73-269
               

               
Cow position:
               
chr11:46499190-46499009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
73-273
               

               
Cow position:
               
chr11:66685710-66685911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
17, 95
               

               
Conread position:
               
73-275
               

               
Cow position:
               
chr11:33368269-33368075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
73-276
               

               
Cow position:
               
chr11:23278765-23278972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
73-280
               

               
Cow position:
               
chr11:25604152-25603935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
73-280
               

               
Cow position:
               
chr11:42016440-42016651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
95, 36
               

               
Conread position:
               
73-283
               

               
Cow position:
               
chr11:15366777-15366988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
24, 89
               

               
Conread position:
               
73-296
               

               
Cow position:
               
chr11:48086116-48085890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
87, 18
               

               
Conread position:
               
73-297
               

               
Cow position:
               
chr11:58588527-58588317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 71
               

               
Conread position:
               
73-298
               

               
Cow position:
               
chr11:18699070-18698849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
73-298
               

               
Cow position:
               
chr11:35669768-35669982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
73-299
               

               
Cow position:
               
chr11:35769086-35768854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
73-300
               

               
Cow position:
               
chr11:38334721-38334491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
12, 74
               

               
Conread position:
               
73-301
               

               
Cow position:
               
chr11:5218965-5219193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
73-301
               

               
Cow position:
               
chr11:56311403-56311629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
133, 18
               

               
Conread position:
               
73-301
               

               
Cow position:
               
chr11:69168787-69168552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
74-229
               

               
Cow position:
               
chr11:6638805-6638959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 100
               

               
Conread position:
               
74-239
               

               
Cow position:
               
chr11:44016443-44016272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
92, 125
               

               
Conread position:
               
74-253
               

               
Cow position:
               
chr11:30857233-30857052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
74-260
               

               
Cow position:
               
chr11:1485662-1485854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
74-275
               

               
Cow position:
               
chr11:45671181-45671377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
74-283
               

               
Cow position:
               
chr11:41576673-41576883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
12, 71
               

               
Conread position:
               
74-297
               

               
Cow position:
               
chr11:30355243-30355029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
74-298
               

               
Cow position:
               
chr11:11125862-11125633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
74-298
               

               
Cow position:
               
chr11:48660127-48659904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
74-299
               

               
Cow position:
               
chr11:71934750-71934986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
74-300
               

               
Cow position:
               
chr11:9237650-9237879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 59
               

               
Conread position:
               
74-300
               

               
Cow position:
               
chr11:10956676-10956905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
74-301
               

               
Cow position:
               
chr11:35347554-35347786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
74-301
               

               
Cow position:
               
chr11:47899448-47899235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
74-301
               

               
Cow position:
               
chr11:62811493-62811264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
89, 19
               

               
Conread position:
               
74-301
               

               
Cow position:
               
chr11:63998894-63999121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
94, 18
               

               
Conread position:
               
74-301
               

               
Cow position:
               
chr11:69978163-69977937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
94, 44
               

               
Conread position:
               
74-301
               

               
Cow position:
               
chr11:72871094-72870865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
101, 17
               

               
Conread position:
               
74-301
               

               
Cow position:
               
chr11:72884416-72884627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
75-229
               

               
Cow position:
               
chr11:33824717-33824867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
75-249
               

               
Cow position:
               
chr11:44859087-44859268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
75-260
               

               
Cow position:
               
chr11:4363721-4363904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
88, 18
               

               
Conread position:
               
75-272
               

               
Cow position:
               
chr11:6581032-6580828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
75-274
               

               
Cow position:
               
chr11:58048528-58048325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
75-292
               

               
Cow position:
               
chr11:47784976-47784750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
75-297
               

               
Cow position:
               
chr11:61454306-61454543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
76, 67
               

               
Conread position:
               
75-297
               

               
Cow position:
               
chr11:80564493-80564264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
90, 19
               

               
Conread position:
               
75-298
               

               
Cow position:
               
chr11:71022197-71021970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 72
               

               
Conread position:
               
75-300
               

               
Cow position:
               
chr11:20238873-20238644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
75-300
               

               
Cow position:
               
chr11:35153624-35153856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
75-300
               

               
Cow position:
               
chr11:85723890-85723665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
90, 18
               

               
Conread position:
               
75-301
               

               
Cow position:
               
chr11:6245518-6245285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
82, 184
               

               
Conread position:
               
76-231
               

               
Cow position:
               
chr11:62655888-62655729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
76-238
               

               
Cow position:
               
chr11:17369722-17369560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
76-249
               

               
Cow position:
               
chr11:7617016-7617188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
76-253
               

               
Cow position:
               
chr11:15999857-15999672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
76-257
               

               
Cow position:
               
chr11:74839798-74839621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
76-260
               

               
Cow position:
               
chr11:19147946-19148129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
76-266
               

               
Cow position:
               
chr11:63695644-63695843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
76-281
               

               
Cow position:
               
chr11:1980069-1980281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
76-283
               

               
Cow position:
               
chr11:15607794-15607987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
76-296
               

               
Cow position:
               
chr11:43914489-43914263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
76-297
               

               
Cow position:
               
chr11:17638322-17638564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
76-298
               

               
Cow position:
               
chr11:30638757-30638980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
85, 11
               

               
Conread position:
               
76-298
               

               
Cow position:
               
chr11:49057579-49057373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
76-298
               

               
Cow position:
               
chr11:83398105-83397875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
76-300
               

               
Cow position:
               
chr11:35724165-35723938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 17
               

               
Conread position:
               
76-300
               

               
Cow position:
               
chr11:40608398-40608626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
76-301
               

               
Cow position:
               
chr11:3715018-3714792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
88, 193
               

               
Conread position:
               
76-301
               

               
Cow position:
               
chr11:66188126-66188350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
92, 15
               

               
Conread position:
               
76-301
               

               
Cow position:
               
chr11:71492669-71492893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
76-301
               

               
Cow position:
               
chr11:75285560-75285799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
77-214
               

               
Cow position:
               
chr11:68592213-68592071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
77-253
               

               
Cow position:
               
chr11:33369347-33369165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
77-253
               

               
Cow position:
               
chr11:83249589-83249417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 14
               

               
Conread position:
               
77-258
               

               
Cow position:
               
chr11:19508433-19508267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
77-266
               

               
Cow position:
               
chr11:40538743-40538552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
77-272
               

               
Cow position:
               
chr11:32126810-32126607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
89, 14
               

               
Conread position:
               
77-287
               

               
Cow position:
               
chr11:15017252-15017037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
93, 14
               

               
Conread position:
               
77-298
               

               
Cow position:
               
chr11:30494182-30493966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
84, 14
               

               
Conread position:
               
77-299
               

               
Cow position:
               
chr11:30867372-30867152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
16, 10
               

               
Conread position:
               
77-300
               

               
Cow position:
               
chr11:27747113-27746891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
77-300
               

               
Cow position:
               
chr11:44223075-44222857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
82, 14
               

               
Conread position:
               
77-300
               

               
Cow position:
               
chr11:70483652-70483884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
77-301
               

               
Cow position:
               
chr11:41365-41145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
147, 65
               

               
Conread position:
               
77-301
               

               
Cow position:
               
chr11:6194583-6194373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
77-301
               

               
Cow position:
               
chr11:47837514-47837287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
81, 42
               

               
Conread position:
               
77-301
               

               
Cow position:
               
chr11:55494859-55494646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
188, 50
               

               
Conread position:
               
78-167
               

               
Cow position:
               
chr11:47904430-47904341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
90
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
78-237
               

               
Cow position:
               
chr11:2937477-2937633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
78-249
               

               
Cow position:
               
chr11:82732954-82733131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
78-258
               

               
Cow position:
               
chr11:51683410-51683225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
78-260
               

               
Cow position:
               
chr11:70600633-70600821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
78-261
               

               
Cow position:
               
chr11:40818441-40818620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
78-281
               

               
Cow position:
               
chr11:48900665-48900858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
78-283
               

               
Cow position:
               
chr11:25620196-25620412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
78-298
               

               
Cow position:
               
chr11:14470555-14470340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
78-298
               

               
Cow position:
               
chr11:26143904-26144126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
78-298
               

               
Cow position:
               
chr11:53510301-53510530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
46, 185
               

               
Conread position:
               
78-298
               

               
Cow position:
               
chr11:64044412-64044203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
12, 104
               

               
Conread position:
               
78-300
               

               
Cow position:
               
chr11:1625028-1625256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
83, 127
               

               
Conread position:
               
78-300
               

               
Cow position:
               
chr11:11533741-11533960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
78-301
               

               
Cow position:
               
chr11:42083647-42083439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
169, 76
               

               
Conread position:
               
78-301
               

               
Cow position:
               
chr11:42359287-42359081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
78-301
               

               
Cow position:
               
chr11:47638831-47639060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
78-301
               

               
Cow position:
               
chr11:62789321-62789097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
78-301
               

               
Cow position:
               
chr11:63470054-63469842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
16, 84
               

               
Conread position:
               
79-183
               

               
Cow position:
               
chr11:42335989-42335886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
79-233
               

               
Cow position:
               
chr11:2310262-2310110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 78
               

               
Conread position:
               
79-278
               

               
Cow position:
               
chr11:30211077-30210894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
105, 14
               

               
Conread position:
               
80-260
               

               
Cow position:
               
chr11:74152556-74152747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 172
               

               
Conread position:
               
80-275
               

               
Cow position:
               
chr11:75749657-75749471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
104, 46
               

               
Conread position:
               
80-296
               

               
Cow position:
               
chr11:7385627-7385411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
13, 124
               

               
Conread position:
               
80-298
               

               
Cow position:
               
chr11:65495152-65495366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
80-299
               

               
Cow position:
               
chr11:81138404-81138178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
85, 155
               

               
Conread position:
               
80-300
               

               
Cow position:
               
chr11:11558360-11558139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 31
               

               
Conread position:
               
80-300
               

               
Cow position:
               
chr11:68909662-68909878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
80-301
               

               
Cow position:
               
chr11:17676183-17676406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
80-301
               

               
Cow position:
               
chr11:37804360-37804587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
80-301
               

               
Cow position:
               
chr11:41985856-41986079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
80-301
               

               
Cow position:
               
chr11:49153132-49152916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
81-238
               

               
Cow position:
               
chr11:18574663-18574826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
82, 124
               

               
Conread position:
               
81-241
               

               
Cow position:
               
chr11:57170420-57170574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
150, 10
               

               
Conread position:
               
81-243
               

               
Cow position:
               
chr11:59744189-59744030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 100
               

               
Conread position:
               
81-255
               

               
Cow position:
               
chr11:75388186-75388362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
81-272
               

               
Cow position:
               
chr11:6423207-6423403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
82, 136
               

               
Conread position:
               
81-277
               

               
Cow position:
               
chr11:1485043-1485236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
103, 74
               

               
Conread position:
               
81-277
               

               
Cow position:
               
chr11:46784653-46784465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
81-279
               

               
Cow position:
               
chr11:58575205-58575401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
97, 53
               

               
Conread position:
               
81-280
               

               
Cow position:
               
chr11:77017422-77017229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
12, 111
               

               
Conread position:
               
81-292
               

               
Cow position:
               
chr11:40459296-40459083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
81-298
               

               
Cow position:
               
chr11:52297030-52297250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
81-299
               

               
Cow position:
               
chr11:1067248-1067471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
84, 20
               

               
Conread position:
               
81-299
               

               
Cow position:
               
chr11:67614734-67614953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
81-300
               

               
Cow position:
               
chr11:15632369-15632586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
84, 61
               

               
Conread position:
               
81-300
               

               
Cow position:
               
chr11:16342057-16342261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
81-300
               

               
Cow position:
               
chr11:35212980-35213200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 46
               

               
Conread position:
               
81-300
               

               
Cow position:
               
chr11:46922696-46922918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
81-300
               

               
Cow position:
               
chr11:52380681-52380904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
81-301
               

               
Cow position:
               
chr11:1380868-1380642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
81-301
               

               
Cow position:
               
chr11:19946612-19946402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
76, 33
               

               
Conread position:
               
81-301
               

               
Cow position:
               
chr11:27461919-27462131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
81-302
               

               
Cow position:
               
chr11:10095534-10095309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
82-260
               

               
Cow position:
               
chr11:47412032-47411848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
82-268
               

               
Cow position:
               
chr11:9836265-9836457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
82-282
               

               
Cow position:
               
chr11:42786492-42786698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
82, 170
               

               
Conread position:
               
82-283
               

               
Cow position:
               
chr11:68326669-68326879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
82-283
               

               
Cow position:
               
chr11:74427869-74427662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
82-296
               

               
Cow position:
               
chr11:2900523-2900749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
82-297
               

               
Cow position:
               
chr11:30708694-30708477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
82-298
               

               
Cow position:
               
chr11:83043177-83043393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
82-300
               

               
Cow position:
               
chr11:15339245-15339031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
82-300
               

               
Cow position:
               
chr11:41213242-41213010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
82-300
               

               
Cow position:
               
chr11:49872698-49872917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
95, 9
               

               
Conread position:
               
82-301
               

               
Cow position:
               
chr11:9270548-9270758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
82-301
               

               
Cow position:
               
chr11:22977693-22977907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
82-301
               

               
Cow position:
               
chr11:37918858-37919079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
82-301
               

               
Cow position:
               
chr11:41603510-41603719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 74
               

               
Conread position:
               
82-301
               

               
Cow position:
               
chr11:64048581-64048370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
7, 44
               

               
Conread position:
               
82-301
               

               
Cow position:
               
chr11:77705942-77705725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
19, 142
               

               
Conread position:
               
82-302
               

               
Cow position:
               
chr11:66041462-66041250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
83-233
               

               
Cow position:
               
chr11:35848953-35849103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 95
               

               
Conread position:
               
83-241
               

               
Cow position:
               
chr11:64335019-64334862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
97, 31
               

               
Conread position:
               
83-272
               

               
Cow position:
               
chr11:19657026-19657218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
83-272
               

               
Cow position:
               
chr11:29482252-29482440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
83-288
               

               
Cow position:
               
chr11:49207901-49207691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
17, 165
               

               
Conread position:
               
83-290
               

               
Cow position:
               
chr11:58812891-58813094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
128, 44
               

               
Conread position:
               
83-293
               

               
Cow position:
               
chr11:67600966-67600759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
83-299
               

               
Cow position:
               
chr11:4636986-4637203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
87, 104
               

               
Conread position:
               
83-300
               

               
Cow position:
               
chr11:258983-259204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
11, 102
               

               
Conread position:
               
83-301
               

               
Cow position:
               
chr11:38211832-38211612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
83-301
               

               
Cow position:
               
chr11:45276960-45277182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
78, 8
               

               
Conread position:
               
83-301
               

               
Cow position:
               
chr11:69417592-69417370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
80, 185
               

               
Conread position:
               
83-301
               

               
Cow position:
               
chr11:84890538-84890750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
19, 78
               

               
Conread position:
               
83-302
               

               
Cow position:
               
chr11:41437996-41438221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
84-238
               

               
Cow position:
               
chr11:81928324-81928478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
42, 113
               

               
Conread position:
               
84-249
               

               
Cow position:
               
chr11:81175786-81175615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
84-252
               

               
Cow position:
               
chr11:63201444-63201269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
84-255
               

               
Cow position:
               
chr11:30485845-30485664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
84-255
               

               
Cow position:
               
chr11:80296671-80296840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
84-285
               

               
Cow position:
               
chr11:80586451-80586257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
84-296
               

               
Cow position:
               
chr11:36647515-36647319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
164, 43
               

               
Conread position:
               
84-298
               

               
Cow position:
               
chr11:375646-375429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
19, 9
               

               
Conread position:
               
84-300
               

               
Cow position:
               
chr11:4199462-4199239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
73, 134
               

               
Conread position:
               
84-301
               

               
Cow position:
               
chr11:249317-249515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
84-301
               

               
Cow position:
               
chr11:18924935-18924712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
79, 117
               

               
Conread position:
               
84-301
               

               
Cow position:
               
chr11:45283115-45282895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 162
               

               
Conread position:
               
84-301
               

               
Cow position:
               
chr11:68904901-68905110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
85-253
               

               
Cow position:
               
chr11:48246892-48247047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
121, 6
               

               
Conread position:
               
85-278
               

               
Cow position:
               
chr11:17074039-17074229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 102
               

               
Conread position:
               
86-300
               

               
Cow position:
               
chr11:18447315-18447524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
86-301
               

               
Cow position:
               
chr11:30209637-30209853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
86-301
               

               
Cow position:
               
chr11:80412821-80413048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
9, 187
               

               
Conread position:
               
87-221
               

               
Cow position:
               
chr11:49568051-49568185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
90, 20
               

               
Conread position:
               
87-233
               

               
Cow position:
               
chr11:53460883-53460731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
87-260
               

               
Cow position:
               
chr11:5176196-5176369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-272
               

               
Cow position:
               
chr11:5264280-5264092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
84, 14
               

               
Conread position:
               
87-290
               

               
Cow position:
               
chr11:74316891-74316687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
87-292
               

               
Cow position:
               
chr11:27907955-27907756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
87-294
               

               
Cow position:
               
chr11:63165466-63165673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-296
               

               
Cow position:
               
chr11:17227466-17227670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
87-298
               

               
Cow position:
               
chr11:13040003-13040202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
87-298
               

               
Cow position:
               
chr11:83032862-83032650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
95, 79
               

               
Conread position:
               
87-300
               

               
Cow position:
               
chr11:83323762-83323531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
87-301
               

               
Cow position:
               
chr11:6006494-6006273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
87-301
               

               
Cow position:
               
chr11:8584500-8584294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
87-301
               

               
Cow position:
               
chr11:17721616-17721835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
87-301
               

               
Cow position:
               
chr11:17859968-17860189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
83, 138
               

               
Conread position:
               
87-301
               

               
Cow position:
               
chr11:27719154-27719352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
33, 77
               

               
Conread position:
               
87-301
               

               
Cow position:
               
chr11:38639284-38639079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
87-301
               

               
Cow position:
               
chr11:43360602-43360810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
70, 93
               

               
Conread position:
               
87-301
               

               
Cow position:
               
chr11:70978550-70978767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
87-302
               

               
Cow position:
               
chr11:46427222-46427442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
87-302
               

               
Cow position:
               
chr11:65762400-65762623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
87-302
               

               
Cow position:
               
chr11:70458229-70458007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
78, 114
               

               
Conread position:
               
88-229
               

               
Cow position:
               
chr11:2830840-2830695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
88-246
               

               
Cow position:
               
chr11:36300400-36300560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
88-252
               

               
Cow position:
               
chr11:62606602-62606431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
88-255
               

               
Cow position:
               
chr11:37042158-37041984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
88-258
               

               
Cow position:
               
chr11:35276435-35276278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
164, 30
               

               
Conread position:
               
88-260
               

               
Cow position:
               
chr11:41278371-41278193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
77, 118
               

               
Conread position:
               
88-269
               

               
Cow position:
               
chr11:26535968-26535786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
77, 136
               

               
Conread position:
               
88-272
               

               
Cow position:
               
chr11:63498947-63499131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
77, 89
               

               
Conread position:
               
88-277
               

               
Cow position:
               
chr11:30322310-30322504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
80, 58
               

               
Conread position:
               
88-280
               

               
Cow position:
               
chr11:86895556-86895364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
88-281
               

               
Cow position:
               
chr11:51195913-51196096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
88-281
               

               
Cow position:
               
chr11:67948573-67948755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
88-283
               

               
Cow position:
               
chr11:27502519-27502717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
67, 26
               

               
Conread position:
               
88-298
               

               
Cow position:
               
chr11:50472502-50472287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 196
               

               
Conread position:
               
88-299
               

               
Cow position:
               
chr11:7560185-7559968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
88-299
               

               
Cow position:
               
chr11:50152629-50152845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
88-300
               

               
Cow position:
               
chr11:866464-866260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
88-300
               

               
Cow position:
               
chr11:1932304-1932524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
88-300
               

               
Cow position:
               
chr11:3715423-3715205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
88-300
               

               
Cow position:
               
chr11:23251415-23251623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
141, 39
               

               
Conread position:
               
88-300
               

               
Cow position:
               
chr11:35580445-35580227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
88-300
               

               
Cow position:
               
chr11:65157221-65157441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
88-300
               

               
Cow position:
               
chr11:72292745-72292520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
88-300
               

               
Cow position:
               
chr11:81167847-81168059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
83, 118
               

               
Conread position:
               
88-301
               

               
Cow position:
               
chr11:6233694-6233913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
88-301
               

               
Cow position:
               
chr11:19247021-19247232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
88-301
               

               
Cow position:
               
chr11:47310800-47311017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
83, 191
               

               
Conread position:
               
88-301
               

               
Cow position:
               
chr11:48932405-48932620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
117, 143
               

               
Conread position:
               
88-301
               

               
Cow position:
               
chr11:53778804-53778583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
88-301
               

               
Cow position:
               
chr11:64029083-64029296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
73, 109
               

               
Conread position:
               
88-301
               

               
Cow position:
               
chr11:68913327-68913107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
88-301
               

               
Cow position:
               
chr11:71345131-71345357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
88-301
               

               
Cow position:
               
chr11:82740676-82740476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
88-301
               

               
Cow position:
               
chr11:82940446-82940651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
88-303
               

               
Cow position:
               
chr11:31537264-31537475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 108
               

               
Conread position:
               
89-298
               

               
Cow position:
               
chr11:30964526-30964316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
68, 131
               

               
Conread position:
               
90-300
               

               
Cow position:
               
chr11:11469471-11469680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
80, 97
               

               
Conread position:
               
91-225
               

               
Cow position:
               
chr11:6784386-6784251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 109
               

               
Conread position:
               
91-234
               

               
Cow position:
               
chr11:12768577-12768432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
91-238
               

               
Cow position:
               
chr11:9691190-9691034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
91-238
               

               
Cow position:
               
chr11:73638036-73637884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
77, 127
               

               
Conread position:
               
91-249
               

               
Cow position:
               
chr11:63484121-63483961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
91-251
               

               
Cow position:
               
chr11:43965709-43965861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
91-252
               

               
Cow position:
               
chr11:53486979-53487138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
91-253
               

               
Cow position:
               
chr11:71814883-71814721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-255
               

               
Cow position:
               
chr11:6255828-6255991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 137
               

               
Conread position:
               
91-255
               

               
Cow position:
               
chr11:69676174-69676340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 42
               

               
Conread position:
               
91-260
               

               
Cow position:
               
chr11:4621254-4621423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-280
               

               
Cow position:
               
chr11:20234867-20234672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
91-281
               

               
Cow position:
               
chr11:30986817-30986628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
75, 156
               

               
Conread position:
               
91-283
               

               
Cow position:
               
chr11:21830030-21830225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
71, 153
               

               
Conread position:
               
91-283
               

               
Cow position:
               
chr11:42084492-42084691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
91-293
               

               
Cow position:
               
chr11:41215914-41215707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
66, 44
               

               
Conread position:
               
91-294
               

               
Cow position:
               
chr11:3797885-3797691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
91-295
               

               
Cow position:
               
chr11:20205677-20205879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
91-296
               

               
Cow position:
               
chr11:30842844-30843047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
91-296
               

               
Cow position:
               
chr11:80639371-80639578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
172, 43
               

               
Conread position:
               
91-299
               

               
Cow position:
               
chr11:19500623-19500820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
91-299
               

               
Cow position:
               
chr11:21736130-21736327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
91-300
               

               
Cow position:
               
chr11:2327870-2327653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
91-300
               

               
Cow position:
               
chr11:5201465-5201684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
91-300
               

               
Cow position:
               
chr11:33409085-33409294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
91-300
               

               
Cow position:
               
chr11:38236426-38236219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
70, 41
               

               
Conread position:
               
91-300
               

               
Cow position:
               
chr11:57503661-57503450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 109
               

               
Conread position:
               
91-300
               

               
Cow position:
               
chr11:71390393-71390593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
91-301
               

               
Cow position:
               
chr11:2917412-2917619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
91-301
               

               
Cow position:
               
chr11:15382314-15382536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
91-301
               

               
Cow position:
               
chr11:21886011-21885800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
75, 27
               

               
Conread position:
               
91-301
               

               
Cow position:
               
chr11:22676293-22676082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 113
               

               
Conread position:
               
91-301
               

               
Cow position:
               
chr11:29786312-29786532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
91-301
               

               
Cow position:
               
chr11:29960473-29960265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
91-301
               

               
Cow position:
               
chr11:37424966-37425175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
91-301
               

               
Cow position:
               
chr11:50937577-50937778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
101, 58
               

               
Conread position:
               
91-301
               

               
Cow position:
               
chr11:53817036-53816824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 178
               

               
Conread position:
               
91-301
               

               
Cow position:
               
chr11:67615071-67615278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
66, 23
               

               
Conread position:
               
91-301
               

               
Cow position:
               
chr11:78380888-78381094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
91-301
               

               
Cow position:
               
chr11:80819844-80820036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
91-302
               

               
Cow position:
               
chr11:42183220-42183010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
57, 165
               

               
Conread position:
               
92-253
               

               
Cow position:
               
chr11:78672853-78672685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
92-269
               

               
Cow position:
               
chr11:76248226-76248048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
92-297
               

               
Cow position:
               
chr11:45435255-45435050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
92-300
               

               
Cow position:
               
chr11:81134989-81135200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               
UCSC Genome Browser

               
Conread position:
               
92-301
               

               
Cow position:
               
chr11:3896518-3896732 (view  custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
69, 178
               
UCSC Genome Browser

               
               
               
Conread position:
92-301

               
               
               
Cow position:
chr11:46747679-46747894 (view  custom track)

               
               
               
Alignm length:
216

               
               
               
Alignm identity:
157

               
               
               
Alignm E-value:
9e-34

               
               
               
Alignm gaps (pig, cow):
72, 0
UCSC Genome Browser

               
               
               
Conread position:
92-301

               
               
               
Cow position:
chr11:62889712-62889927 (view  custom track)

               
               
               
Alignm length:
216

               
               
               
Alignm identity:
155

               
               
               
Alignm E-value:
7e-32

               
               
               
Alignm gaps (pig, cow):
74, 0

               
               
               Conread position:93-255
               
               
               Cow position:chr11:29782336-29782178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):64, 36

               
               
               Conread position:93-272
               
               
               Cow position:chr11:63485111-63484931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):163, 68

               
               
               Conread position:93-273
               
               
               Cow position:chr11:66104214-66104401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:93-279
               
               
               Cow position:chr11:19891015-19890831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):77, 61

               
               
               Conread position:93-289
               
               
               Cow position:chr11:67183833-67183626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:93-298
               
               
               Cow position:chr11:21843960-21844162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):75, 123

               
               
               Conread position:93-298
               
               
               Cow position:chr11:63435701-63435491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):68, 165

               
               
               Conread position:93-298
               
               
               Cow position:chr11:63919888-63920084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:93-299
               
               
               Cow position:chr11:23271827-23272033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):85, 46

               
               
               Conread position:93-299
               
               
               Cow position:chr11:24599220-24599418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:93-300
               
               
               Cow position:chr11:15285445-15285647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):69, 45

               
               
               Conread position:93-300
               
               
               Cow position:chr11:21728110-21728308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):170, 19

               
               
               Conread position:93-300
               
               
               Cow position:chr11:42159883-42160086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:93-301
               
               
               Cow position:chr11:25791514-25791727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):78, 191

               
               
               Conread position:93-301
               
               
               Cow position:chr11:32398820-32398605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 126

               
               
               Conread position:93-301
               
               
               Cow position:chr11:41313483-41313690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:93-301
               
               
               Cow position:chr11:46999165-46998947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 176

               
               
               Conread position:93-301
               
               
               Cow position:chr11:48544615-48544400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):111, 89

               
               
               Conread position:93-301
               
               
               Cow position:chr11:51729453-51729253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:93-301
               
               
               Cow position:chr11:62812773-62812983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 27

               
               
               Conread position:93-302
               
               
               Cow position:chr11:67312964-67312746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):68, 21

               
               
               Conread position:94-211
               
               
               Cow position:chr11:6154746-6154627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:94-237
               
               
               Cow position:chr11:1842135-1841994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:94-242
               
               
               Cow position:chr11:64096489-64096640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:94-298
               
               
               Cow position:chr11:21852138-21852332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:94-301
               
               
               Cow position:chr11:8988052-8988263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:94-301
               
               
               Cow position:chr11:63034992-63035220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:94-301
               
               
               Cow position:chr11:63433888-63434091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:95-221
               
               
               Cow position:chr11:57873985-57873854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:95-260
               
               
               Cow position:chr11:86925787-86925955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 12

               
               
               Conread position:95-297
               
               
               Cow position:chr11:55762033-55761839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):151, 7

               
               
               Conread position:95-300
               
               
               Cow position:chr11:17036355-17036560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):81, 73

               
               
               Conread position:95-300
               
               
               Cow position:chr11:48248023-48248248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:96-302
               
               
               Cow position:chr11:8683902-8684115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:97-253
               
               
               Cow position:chr11:54872586-54872745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 129

               
               
               Conread position:97-301
               
               
               Cow position:chr11:39250139-39249939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:98-260
               
               
               Cow position:chr11:15278844-15279005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:98-279
               
               
               Cow position:chr11:60486242-60486430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:98-298
               
               
               Cow position:chr11:35109366-35109568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:98-301
               
               
               Cow position:chr11:19487305-19487514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:99-300
               
               
               Cow position:chr11:8524945-8525145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):63, 84

               
               
               Conread position:100-296
               
               
               Cow position:chr11:28993576-28993765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:160
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:100-301
               
               
               Cow position:chr11:44017156-44016941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:100-301
               
               
               Cow position:chr11:63202077-63202283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):61, 9

               
               
               Conread position:100-301
               
               
               Cow position:chr11:71009279-71009099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:100-301
               
               
               Cow position:chr11:73353895-73354093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:101-238
               
               
               Cow position:chr11:43641559-43641416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:101-259
               
               
               Cow position:chr11:18910713-18910877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:101-260
               
               
               Cow position:chr11:26343273-26343109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):70, 147

               
               
               Conread position:101-272
               
               
               Cow position:chr11:60720283-60720460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:101-276
               
               
               Cow position:chr11:22884577-22884405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:101-277
               
               
               Cow position:chr11:2836031-2835849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:101-290
               
               
               Cow position:chr11:25783886-25783690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:101-297
               
               
               Cow position:chr11:34467733-34467541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:157
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:101-297
               
               
               Cow position:chr11:42296456-42296649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:101-300
               
               
               Cow position:chr11:17083142-17083342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:101-300
               
               
               Cow position:chr11:29677378-29677170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:101-301
               
               
               Cow position:chr11:13042977-13043179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:101-301
               
               
               Cow position:chr11:18543350-18543539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:101-301
               
               
               Cow position:chr11:34644829-34644622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 175

               
               
               Conread position:101-301
               
               
               Cow position:chr11:36920407-36920611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 25

               
               
               Conread position:101-301
               
               
               Cow position:chr11:48474880-48474670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:101-301
               
               
               Cow position:chr11:57608295-57608489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:101-301
               
               
               Cow position:chr11:77319583-77319381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:101-302
               
               
               Cow position:chr11:71854113-71854313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 111

               
               
               Conread position:101-303
               
               
               Cow position:chr11:21173266-21173469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):57, 187

               
               
               Conread position:102-232
               
               
               Cow position:chr11:36209021-36209151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:102-234
               
               
               Cow position:chr11:33289299-33289429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:102-301
               
               
               Cow position:chr11:18852073-18851875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:102-301
               
               
               Cow position:chr11:27565486-27565300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:102-301
               
               
               Cow position:chr11:29659729-29659526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:102-301
               
               
               Cow position:chr11:47772212-47772423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:103-260
               
               
               Cow position:chr11:30654817-30654663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:103-297
               
               
               Cow position:chr11:39854853-39855043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:103-301
               
               
               Cow position:chr11:26632844-26633047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:104-255
               
               
               Cow position:chr11:72401567-72401720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:104-298
               
               
               Cow position:chr11:64409134-64408946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:104-299
               
               
               Cow position:chr11:85271577-85271769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:105-271
               
               
               Cow position:chr11:84228556-84228721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:105-280
               
               
               Cow position:chr11:79707870-79707701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:105-300
               
               
               Cow position:chr11:83066659-83066465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 166

               
               
               Conread position:106-281
               
               
               Cow position:chr11:81406001-81406183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:106-301
               
               
               Cow position:chr11:24602123-24601931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):115, 13

               
               
               Conread position:108-292
               
               
               Cow position:chr11:31875258-31875068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:109-298
               
               
               Cow position:chr11:20602378-20602197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:109-300
               
               
               Cow position:chr11:81162284-81162465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:111-300
               
               
               Cow position:chr11:10992423-10992233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):121, 151

               
               
               Conread position:111-301
               
               
               Cow position:chr11:8544855-8545047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:112-300
               
               
               Cow position:chr11:39499515-39499324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:113-249
               
               
               Cow position:chr11:62081813-62081949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:115-298
               
               
               Cow position:chr11:45646436-45646623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:117-286
               
               
               Cow position:chr11:905239-905401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:119-255
               
               
               Cow position:chr11:36104468-36104325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:119-283
               
               
               Cow position:chr11:33993307-33993149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):137, 35

               
               
               Conread position:119-299
               
               
               Cow position:chr11:87155674-87155489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):46, 149

               
               
               Conread position:119-301
               
               
               Cow position:chr11:34136394-34136210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 148

               
               
               Conread position:120-301
               
               
               Cow position:chr11:31410728-31410911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:120-301
               
               
               Cow position:chr11:49934591-49934764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:121-301
               
               
               Cow position:chr11:68206695-68206877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):122, 171

               
               
               Conread position:123-298
               
               
               Cow position:chr11:23586789-23586608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:123-301
               
               
               Cow position:chr11:17493632-17493445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:124-296
               
               
               Cow position:chr11:9699037-9698874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:124-300
               
               
               Cow position:chr11:3393066-3393241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:124-302
               
               
               Cow position:chr11:71868455-71868637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:126-301
               
               
               Cow position:chr11:67804891-67804716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):29, 94

               
               
               Conread position:127-280
               
               
               Cow position:chr11:73977154-73977316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:127-301
               
               
               Cow position:chr11:84977220-84977392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:130-261
               
               
               Cow position:chr11:18706687-18706818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:132-301
               
               
               Cow position:chr11:34113402-34113231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:132-301
               
               
               Cow position:chr11:59873063-59872897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):91, 40

               
               
               Conread position:133-260
               
               
               Cow position:chr11:61178491-61178365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:136-300
               
               
               Cow position:chr11:2344388-2344218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:139-301
               
               
               Cow position:chr11:70086461-70086301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:146-302
               
               
               Cow position:chr11:11523331-11523493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 104

               
               
               Conread position:147-301
               
               
               Cow position:chr11:18608112-18608271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:148-301
               
               
               Cow position:chr11:76114760-76114613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:154-301
               
               
               Cow position:chr11:36238891-36238747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:155-298
               
               
               Cow position:chr11:19606689-19606547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:155-301
               
               
               Cow position:chr11:63909554-63909697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:156-301
               
               
               Cow position:chr11:36658712-36658852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:157-301
               
               
               Cow position:chr11:6202553-6202409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:157-301
               
               
               Cow position:chr11:7590299-7590159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:158-301
               
               
               Cow position:chr11:4652863-4653006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:158-301
               
               
               Cow position:chr11:29946805-29946947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:159-298
               
               
               Cow position:chr11:22499256-22499394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:161-283
               
               
               Cow position:chr11:74720832-74720709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:161-288
               
               
               Cow position:chr11:84775180-84775054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:161-296
               
               
               Cow position:chr11:31885829-31885688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:161-297
               
               
               Cow position:chr11:44636648-44636783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:161-297
               
               
               Cow position:chr11:62609711-62609575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-297
               
               
               Cow position:chr11:79018952-79019088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-298
               
               
               Cow position:chr11:30955107-30954970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-298
               
               
               Cow position:chr11:47004452-47004318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:161-298
               
               
               Cow position:chr11:47882911-47882773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:161-298
               
               
               Cow position:chr11:56290618-56290481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-298
               
               
               Cow position:chr11:71501027-71501162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:161-299
               
               
               Cow position:chr11:48272307-48272169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-300
               
               
               Cow position:chr11:54334435-54334296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-300
               
               
               Cow position:chr11:63917370-63917509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):100, 57

               
               
               Conread position:161-300
               
               
               Cow position:chr11:69119401-69119261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:161-301
               
               
               Cow position:chr11:16906944-16907082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:161-301
               
               
               Cow position:chr11:17831116-17831254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:161-301
               
               
               Cow position:chr11:18587489-18587629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-301
               
               
               Cow position:chr11:22747224-22747361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):114, 96

               
               
               Conread position:161-301
               
               
               Cow position:chr11:26845488-26845627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:161-301
               
               
               Cow position:chr11:28644194-28644054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-301
               
               
               Cow position:chr11:30272833-30272964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:161-301
               
               
               Cow position:chr11:34032093-34032235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):23, 6

               
               
               Conread position:161-301
               
               
               Cow position:chr11:34692962-34692820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:161-301
               
               
               Cow position:chr11:35803243-35803102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):63, 94

               
               
               Conread position:161-301
               
               
               Cow position:chr11:40573229-40573365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:161-301
               
               
               Cow position:chr11:41293711-41293851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-301
               
               
               Cow position:chr11:59702598-59702453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:161-301
               
               
               Cow position:chr11:62150787-62150924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:161-301
               
               
               Cow position:chr11:69076017-69075878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:161-301
               
               
               Cow position:chr11:70826055-70825915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-301
               
               
               Cow position:chr11:82730891-82731031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:162-301
               
               
               Cow position:chr11:6633816-6633677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:162-301
               
               
               Cow position:chr11:53717701-53717840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 79

               
               
               Conread position:162-301
               
               
               Cow position:chr11:62778547-62778411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):85, 81

               
               
               Conread position:162-302
               
               
               Cow position:chr11:1070985-1071125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:163-288
               
               
               Cow position:chr11:64058239-64058364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):84, 80

               
               
               Conread position:163-296
               
               
               Cow position:chr11:69652678-69652809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):116, 25

               
               
               Conread position:163-300
               
               
               Cow position:chr11:36328929-36329067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:163-300
               
               
               Cow position:chr11:64089993-64090129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:164-298
               
               
               Cow position:chr11:56654663-56654525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:165-297
               
               
               Cow position:chr11:14466384-14466516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:165-298
               
               
               Cow position:chr11:34963172-34963040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:165-298
               
               
               Cow position:chr11:83230298-83230430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:165-299
               
               
               Cow position:chr11:34413237-34413371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:165-301
               
               
               Cow position:chr11:3283126-3282996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:165-301
               
               
               Cow position:chr11:4430034-4430166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:165-301
               
               
               Cow position:chr11:15373942-15373805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:165-301
               
               
               Cow position:chr11:58938642-58938778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:165-301
               
               
               Cow position:chr11:64867917-64868054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:166-278
               
               
               Cow position:chr11:34238469-34238581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-288
               
               
               Cow position:chr11:15682878-15683000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-296
               
               
               Cow position:chr11:73512342-73512471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:166-298
               
               
               Cow position:chr11:3234177-3234045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:166-299
               
               
               Cow position:chr11:62376372-62376504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:167-297
               
               
               Cow position:chr11:1362367-1362497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:167-298
               
               
               Cow position:chr11:32690870-32691001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:167-301
               
               
               Cow position:chr11:17321750-17321614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:168-297
               
               
               Cow position:chr11:33345545-33345416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:168-300
               
               
               Cow position:chr11:43898238-43898107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:168-300
               
               
               Cow position:chr11:44234455-44234323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:168-301
               
               
               Cow position:chr11:8428609-8428478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:168-301
               
               
               Cow position:chr11:30925254-30925123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:168-301
               
               
               Cow position:chr11:35684401-35684534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:169-302
               
               
               Cow position:chr11:30484019-30483885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:170-300
               
               
               Cow position:chr11:23128442-23128572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:172-293
               
               
               Cow position:chr11:3248611-3248731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:172-297
               
               
               Cow position:chr11:377546-377671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:172-300
               
               
               Cow position:chr11:65767295-65767167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:172-301
               
               
               Cow position:chr11:16842892-16843017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:173-301
               
               
               Cow position:chr11:25387163-25387033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:174-301
               
               
               Cow position:chr11:64406322-64406195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:175-293
               
               
               Cow position:chr11:61130574-61130692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:175-300
               
               
               Cow position:chr11:65803777-65803903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:175-301
               
               
               Cow position:chr11:52983767-52983642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:177-300
               
               
               Cow position:chr11:35873912-35874035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:177-301
               
               
               Cow position:chr11:53553306-53553185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:177-301
               
               
               Cow position:chr11:63687529-63687653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:178-298
               
               
               Cow position:chr11:33341055-33341175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:178-300
               
               
               Cow position:chr11:10363297-10363418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:178-301
               
               
               Cow position:chr11:28168333-28168456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:181-300
               
               
               Cow position:chr11:53279628-53279744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:185-297
               
               
               Cow position:chr11:50073020-50072908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:185-298
               
               
               Cow position:chr11:31352469-31352582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:198-301
               
               
               Cow position:chr11:69392632-69392529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0
Show alignments to all cow chromosomes.