Cow genome map
| Conread name: | Utr2-C0001808_K12 |
| Conread position: | 7-172 |
| Cow position: | chr1:31805473-31805299 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 75, 31 |
| Conread position: | 7-230 |
| Cow position: | chr1:58341588-58341355 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 7-237 |
| Cow position: | chr1:41092887-41093131 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 7-320 |
| Cow position: | chr1:21298226-21297914 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 86, 16 |
| Conread position: | 7-321 |
| Cow position: | chr1:24241021-24241341 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 8-238 |
| Cow position: | chr1:3889711-3889950 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 15, 125 |
| Conread position: | 8-343 |
| Cow position: | chr1:31252553-31252875 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 61 |
| Conread position: | 60-326 |
| Cow position: | chr1:93110702-93110973 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 171 |
| Conread position: | 75-268 |
| Cow position: | chr1:11020933-11020743 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 122, 27 |
| Conread position: | 77-269 |
| Cow position: | chr1:13456048-13455858 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 31, 159 |
| Conread position: | 81-321 |
| Cow position: | chr1:13413925-13413677 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 81-323 |
| Cow position: | chr1:7672416-7672169 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 118, 15 |
| Conread position: | 83-321 |
| Cow position: | chr1:57635358-57635111 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 84-324 |
| Cow position: | chr1:22777655-22777905 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 98-270 |
| Cow position: | chr1:20214384-20214556 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 113, 143 |
| Conread position: | 98-309 |
| Cow position: | chr1:56643711-56643927 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 99, 40 |
| Conread position: | 98-323 |
| Cow position: | chr1:72791058-72790827 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 129, 31 |
| Conread position: | 102-236 |
| Cow position: | chr1:41138481-41138614 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 95, 31 |
| Conread position: | 102-250 |
| Cow position: | chr1:15367080-15367223 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 29 |
| Conread position: | 102-267 |
| Cow position: | chr1:24738275-24738440 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 94, 127 |
| Conread position: | 102-273 |
| Cow position: | chr1:52819188-52819020 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 27 |
| Conread position: | 102-278 |
| Cow position: | chr1:87034308-87034129 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 95, 132 |
| Conread position: | 102-284 |
| Cow position: | chr1:99609239-99609058 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 95, 31 |
| Conread position: | 102-320 |
| Cow position: | chr1:45535577-45535351 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 106, 209 |
| Conread position: | 102-321 |
| Cow position: | chr1:3923923-3924144 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 95, 27 |
| Conread position: | 102-323 |
| Cow position: | chr1:7731597-7731390 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 95, 52 |
| Conread position: | 106-255 |
| Cow position: | chr1:56748461-56748311 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 106-321 |
| Cow position: | chr1:82337913-82338124 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 91, 70 |
| Conread position: | 106-323 |
| Cow position: | chr1:86364624-86364413 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 91, 69 |
| Conread position: | 108-321 |
| Cow position: | chr1:61884785-61884566 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 109-236 |
| Cow position: | chr1:52039506-52039377 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 109-291 |
| Cow position: | chr1:59910216-59910037 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 89, 29 |
| Conread position: | 109-321 |
| Cow position: | chr1:22615756-22615973 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 109-321 |
| Cow position: | chr1:39702701-39702483 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 105 |
| Conread position: | 116-234 |
| Cow position: | chr1:11873495-11873613 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 77, 97 |
| Conread position: | 116-269 |
| Cow position: | chr1:11323629-11323777 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 83 |
| Conread position: | 119-234 |
| Cow position: | chr1:81355845-81355961 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 119-296 |
| Cow position: | chr1:57264127-57264304 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 11, 157 |
| Conread position: | 119-321 |
| Cow position: | chr1:6941324-6941125 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 78, 112 |
| Conread position: | 119-321 |
| Cow position: | chr1:6958737-6958532 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 78, 133 |
| Conread position: | 127-323 |
| Cow position: | chr1:70534083-70534277 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 142 |
| Conread position: | 129-323 |
| Cow position: | chr1:33986669-33986858 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 112 |
| Conread position: | 138-323 |
| Cow position: | chr1:4385189-4384991 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 16, 82 |
| Conread position: | 141-293 |
| Cow position: | chr1:38544611-38544765 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 55, 45 |
| Conread position: | 142-321 |
| Cow position: | chr1:100823466-100823277 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 106 |
| Conread position: | 154-323 |
| Cow position: | chr1:61221546-61221376 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 55 |
| Conread position: | 156-323 |
| Cow position: | chr1:73701927-73702101 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 42 |
Show alignments to all cow chromosomes.