Cow genome map
| Conread name: | Utr2-C0001808_K12 |
| Conread position: | 7-231 |
| Cow position: | chr3:39868344-39868117 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 7-233 |
| Cow position: | chr3:19560179-19560407 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 78, 14 |
| Conread position: | 7-273 |
| Cow position: | chr3:51813545-51813820 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 15-273 |
| Cow position: | chr3:70754306-70754037 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 67, 22 |
| Conread position: | 23-229 |
| Cow position: | chr3:55300821-55301033 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 30-236 |
| Cow position: | chr3:77065689-77065898 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 136, 74 |
| Conread position: | 30-236 |
| Cow position: | chr3:77067612-77067821 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 136, 74 |
| Conread position: | 30-250 |
| Cow position: | chr3:73935964-73936185 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 75, 182 |
| Conread position: | 32-205 |
| Cow position: | chr3:5535984-5536168 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 42-383 |
| Cow position: | chr3:64679499-64679154 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 181 |
| Conread position: | 43-237 |
| Cow position: | chr3:73306024-73305819 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 36, 90 |
| Conread position: | 60-259 |
| Cow position: | chr3:55815227-55815031 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 83-321 |
| Cow position: | chr3:48275697-48275455 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 21, 154 |
| Conread position: | 83-324 |
| Cow position: | chr3:73545153-73544915 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 86-321 |
| Cow position: | chr3:66964433-66964658 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 22, 80 |
| Conread position: | 98-239 |
| Cow position: | chr3:16622180-16622321 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 66 |
| Conread position: | 98-255 |
| Cow position: | chr3:73417370-73417213 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 100, 89 |
| Conread position: | 98-297 |
| Cow position: | chr3:66885188-66885387 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 99, 144 |
| Conread position: | 98-312 |
| Cow position: | chr3:71430362-71430573 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 99, 114 |
| Conread position: | 98-322 |
| Cow position: | chr3:32869993-32869777 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 100, 31 |
| Conread position: | 98-323 |
| Cow position: | chr3:3283647-3283876 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 133, 23 |
| Conread position: | 102-232 |
| Cow position: | chr3:2335128-2334998 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 95, 123 |
| Conread position: | 102-236 |
| Cow position: | chr3:2216205-2216070 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 102-249 |
| Cow position: | chr3:71104687-71104540 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-262 |
| Cow position: | chr3:23944941-23944781 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 95, 36 |
| Conread position: | 102-277 |
| Cow position: | chr3:27545993-27546164 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 173, 14 |
| Conread position: | 102-300 |
| Cow position: | chr3:31812602-31812399 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 79 |
| Conread position: | 102-321 |
| Cow position: | chr3:16886035-16886257 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 102-321 |
| Cow position: | chr3:22716438-22716646 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 102-321 |
| Cow position: | chr3:42914298-42914080 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 96, 71 |
| Conread position: | 102-323 |
| Cow position: | chr3:22271593-22271818 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 95, 36 |
| Conread position: | 102-323 |
| Cow position: | chr3:23471622-23471853 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 95, 177 |
| Conread position: | 102-323 |
| Cow position: | chr3:55445205-55444981 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 95, 27 |
| Conread position: | 103-375 |
| Cow position: | chr3:73467463-73467191 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 96, 61 |
| Conread position: | 104-323 |
| Cow position: | chr3:69420047-69420261 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 93, 108 |
| Conread position: | 106-234 |
| Cow position: | chr3:23111663-23111792 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 106-254 |
| Cow position: | chr3:15549333-15549184 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 92 |
| Conread position: | 115-272 |
| Cow position: | chr3:3985163-3985004 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 115-321 |
| Cow position: | chr3:34392263-34392465 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 27, 116 |
| Conread position: | 119-312 |
| Cow position: | chr3:73956855-73956661 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 78, 148 |
| Conread position: | 119-323 |
| Cow position: | chr3:63199330-63199132 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 79, 29 |
| Conread position: | 123-323 |
| Cow position: | chr3:56102261-56102067 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 49 |
| Conread position: | 124-273 |
| Cow position: | chr3:19822142-19822295 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 125-321 |
| Cow position: | chr3:38691583-38691793 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 127-321 |
| Cow position: | chr3:17895672-17895471 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 70, 31 |
Show alignments to all cow chromosomes.