Cow genome map
| Conread name: | Utr2-C0001808_K12 |
| Conread position: | 14-252 |
| Cow position: | chr5:35708374-35708609 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 68, 111 |
| Conread position: | 30-268 |
| Cow position: | chr5:32139991-32140221 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 59, 10 |
| Conread position: | 36-227 |
| Cow position: | chr5:11127061-11127262 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 40-181 |
| Cow position: | chr5:50227444-50227294 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 40-273 |
| Cow position: | chr5:8414644-8414401 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 192 |
| Conread position: | 53-252 |
| Cow position: | chr5:68481165-68480967 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 62-261 |
| Cow position: | chr5:42045149-42044939 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 23, 130 |
| Conread position: | 62-323 |
| Cow position: | chr5:39049393-39049127 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 58, 53 |
| Conread position: | 83-326 |
| Cow position: | chr5:32815822-32815581 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 84-323 |
| Cow position: | chr5:55989658-55989415 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 24, 162 |
| Conread position: | 85-321 |
| Cow position: | chr5:28230070-28229833 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 86-321 |
| Cow position: | chr5:1460512-1460744 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 52, 160 |
| Conread position: | 95-252 |
| Cow position: | chr5:48406663-48406817 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 98-273 |
| Cow position: | chr5:42562725-42562891 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 98, 48 |
| Conread position: | 98-293 |
| Cow position: | chr5:37814518-37814327 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 61, 11 |
| Conread position: | 98-294 |
| Cow position: | chr5:20454676-20454479 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 99, 132 |
| Conread position: | 101-324 |
| Cow position: | chr5:15317316-15317100 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 96, 80 |
| Conread position: | 102-228 |
| Cow position: | chr5:59450841-59450967 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-234 |
| Cow position: | chr5:44703235-44703103 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-237 |
| Cow position: | chr5:9090129-9090265 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 102-264 |
| Cow position: | chr5:40711550-40711712 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 36 |
| Conread position: | 102-266 |
| Cow position: | chr5:44735034-44735193 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 96, 25 |
| Conread position: | 102-269 |
| Cow position: | chr5:57626697-57626535 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 102-281 |
| Cow position: | chr5:18842504-18842327 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 150, 128 |
| Conread position: | 102-284 |
| Cow position: | chr5:56385120-56384938 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 95, 69 |
| Conread position: | 102-301 |
| Cow position: | chr5:30845004-30844807 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 95, 35 |
| Conread position: | 102-321 |
| Cow position: | chr5:26046225-26046005 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 97, 25 |
| Conread position: | 102-323 |
| Cow position: | chr5:1343964-1344179 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 108 |
| Conread position: | 102-323 |
| Cow position: | chr5:9499198-9499421 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 95, 139 |
| Conread position: | 102-323 |
| Cow position: | chr5:37714007-37714229 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 56, 134 |
| Conread position: | 102-324 |
| Cow position: | chr5:32087826-32088057 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 106-238 |
| Cow position: | chr5:9083226-9083094 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 108-319 |
| Cow position: | chr5:43929851-43930059 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 89, 21 |
| Conread position: | 114-248 |
| Cow position: | chr5:56753605-56753474 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 119-321 |
| Cow position: | chr5:32963752-32963951 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 78, 159 |
| Conread position: | 119-384 |
| Cow position: | chr5:57890377-57890115 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 114 |
| Conread position: | 125-317 |
| Cow position: | chr5:50900776-50900582 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 105, 25 |
| Conread position: | 137-323 |
| Cow position: | chr5:55195336-55195160 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 131, 64 |
| Conread position: | 139-324 |
| Cow position: | chr5:9498247-9498068 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 58, 91 |
| Conread position: | 159-321 |
| Cow position: | chr5:25035389-25035557 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 166-320 |
| Cow position: | chr5:47757681-47757522 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
Show alignments to all cow chromosomes.