Cow genome map
| Conread name: | Utr2-C0001808_K12 |
| Conread position: | 6-320 |
| Cow position: | chr9:43194542-43194210 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 31, 196 |
| Conread position: | 8-228 |
| Cow position: | chr9:6210758-6210527 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 11-228 |
| Cow position: | chr9:25465015-25464797 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 12-321 |
| Cow position: | chr9:3582873-3582571 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 77, 28 |
| Conread position: | 33-498 |
| Cow position: | chr9:31540154-31539667 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 54, 307 |
| Conread position: | 36-207 |
| Cow position: | chr9:32688730-32688552 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 36-227 |
| Cow position: | chr9:1048062-1048253 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 36-228 |
| Cow position: | chr9:24886528-24886335 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 72, 98 |
| Conread position: | 44-226 |
| Cow position: | chr9:40859830-40860015 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 40, 94 |
| Conread position: | 54-226 |
| Cow position: | chr9:9556412-9556594 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 60-272 |
| Cow position: | chr9:30189213-30189431 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 62-289 |
| Cow position: | chr9:50295908-50295685 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 184 |
| Conread position: | 80-273 |
| Cow position: | chr9:35533813-35533619 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 85-321 |
| Cow position: | chr9:35305975-35305740 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 112, 22 |
| Conread position: | 95-237 |
| Cow position: | chr9:33100984-33100845 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 95-279 |
| Cow position: | chr9:49764812-49764996 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 102, 32 |
| Conread position: | 98-235 |
| Cow position: | chr9:32812504-32812641 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 99, 119 |
| Conread position: | 98-270 |
| Cow position: | chr9:33940767-33940943 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 100, 23 |
| Conread position: | 98-318 |
| Cow position: | chr9:52578377-52578150 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 101-234 |
| Cow position: | chr9:3722705-3722574 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 102-228 |
| Cow position: | chr9:56253061-56253187 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 94, 64 |
| Conread position: | 102-234 |
| Cow position: | chr9:52409291-52409161 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 102-270 |
| Cow position: | chr9:26279013-26278846 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 95, 110 |
| Conread position: | 102-273 |
| Cow position: | chr9:4928791-4928962 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-317 |
| Cow position: | chr9:51928861-51929067 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 112 |
| Conread position: | 102-323 |
| Cow position: | chr9:9325102-9325337 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 102-323 |
| Cow position: | chr9:31777531-31777306 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 95, 151 |
| Conread position: | 102-324 |
| Cow position: | chr9:10144312-10144082 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 102-324 |
| Cow position: | chr9:37431143-37431358 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 58, 70 |
| Conread position: | 102-333 |
| Cow position: | chr9:40060167-40059942 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 95, 109 |
| Conread position: | 103-234 |
| Cow position: | chr9:22361176-22361308 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 103-235 |
| Cow position: | chr9:11830170-11830303 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 103-323 |
| Cow position: | chr9:14961112-14961325 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 93, 34 |
| Conread position: | 104-323 |
| Cow position: | chr9:26124656-26124454 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 106-229 |
| Cow position: | chr9:35708925-35708802 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 91, 29 |
| Conread position: | 106-308 |
| Cow position: | chr9:47875783-47875584 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 91, 168 |
| Conread position: | 106-321 |
| Cow position: | chr9:50076226-50076439 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 24, 125 |
| Conread position: | 107-318 |
| Cow position: | chr9:26310723-26310943 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 110-271 |
| Cow position: | chr9:63597992-63598151 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 111-281 |
| Cow position: | chr9:36410183-36410011 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 117-323 |
| Cow position: | chr9:24850418-24850620 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 95 |
| Conread position: | 119-255 |
| Cow position: | chr9:30138303-30138444 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 119-306 |
| Cow position: | chr9:35745499-35745689 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 37 |
| Conread position: | 124-323 |
| Cow position: | chr9:20897258-20897454 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 72, 51 |
| Conread position: | 128-323 |
| Cow position: | chr9:44408226-44408424 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 112, 69 |
Show alignments to all cow chromosomes.