Cow genome map
| Conread name: | Utr2-C0001808_K12 |
| Conread position: | 7-237 |
| Cow position: | chrX:13360529-13360291 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 8-206 |
| Cow position: | chrX:18248310-18248102 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 28-228 |
| Cow position: | chrX:46372758-46372975 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 17, 202 |
| Conread position: | 37-228 |
| Cow position: | chrX:4794204-4794404 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 38-501 |
| Cow position: | chrX:29925621-29926091 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 325 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 43-234 |
| Cow position: | chrX:22873356-22873160 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 44-317 |
| Cow position: | chrX:23970339-23970069 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 47-228 |
| Cow position: | chrX:40142250-40142429 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 174, 125 |
| Conread position: | 53-323 |
| Cow position: | chrX:42530503-42530779 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 32, 85 |
| Conread position: | 57-234 |
| Cow position: | chrX:38094587-38094763 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 57-300 |
| Cow position: | chrX:6640064-6639817 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 11, 74 |
| Conread position: | 60-234 |
| Cow position: | chrX:11982069-11981893 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 79, 22 |
| Conread position: | 60-234 |
| Cow position: | chrX:18293870-18293694 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 81-234 |
| Cow position: | chrX:34441533-34441688 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 27, 102 |
| Conread position: | 82-234 |
| Cow position: | chrX:15329568-15329415 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 83-273 |
| Cow position: | chrX:18989583-18989392 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 22, 142 |
| Conread position: | 84-323 |
| Cow position: | chrX:17630889-17631125 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 37, 23 |
| Conread position: | 85-236 |
| Cow position: | chrX:31442907-31443061 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 85-276 |
| Cow position: | chrX:41743826-41743636 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 86-284 |
| Cow position: | chrX:42282345-42282145 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 87-269 |
| Cow position: | chrX:4768657-4768477 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 21, 56 |
| Conread position: | 93-236 |
| Cow position: | chrX:25419257-25419401 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 95-278 |
| Cow position: | chrX:36154673-36154855 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 102, 34 |
| Conread position: | 98-254 |
| Cow position: | chrX:11562052-11561897 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 110, 95 |
| Conread position: | 98-303 |
| Cow position: | chrX:4554296-4554101 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 99, 66 |
| Conread position: | 101-232 |
| Cow position: | chrX:40647870-40647742 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 97, 28 |
| Conread position: | 102-235 |
| Cow position: | chrX:38218603-38218476 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 102-236 |
| Cow position: | chrX:12309493-12309629 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 102-251 |
| Cow position: | chrX:6607315-6607168 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 96, 107 |
| Conread position: | 102-265 |
| Cow position: | chrX:2029285-2029121 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 102-273 |
| Cow position: | chrX:21672447-21672272 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 102-279 |
| Cow position: | chrX:8682036-8682212 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 94, 55 |
| Conread position: | 102-312 |
| Cow position: | chrX:38549344-38549129 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 102-319 |
| Cow position: | chrX:23514123-23514330 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 42 |
| Conread position: | 102-321 |
| Cow position: | chrX:20129081-20129299 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 173, 27 |
| Conread position: | 102-321 |
| Cow position: | chrX:22624376-22624163 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 95, 71 |
| Conread position: | 102-321 |
| Cow position: | chrX:34543678-34543470 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 95, 27 |
| Conread position: | 102-324 |
| Cow position: | chrX:33493670-33493436 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 104-323 |
| Cow position: | chrX:25163709-25163502 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 106-234 |
| Cow position: | chrX:37299488-37299358 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 106-236 |
| Cow position: | chrX:21593175-21593043 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 106-236 |
| Cow position: | chrX:25035496-25035627 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 106-291 |
| Cow position: | chrX:16416398-16416215 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 102, 88 |
| Conread position: | 106-321 |
| Cow position: | chrX:6277541-6277749 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 91, 120 |
| Conread position: | 107-273 |
| Cow position: | chrX:21663199-21663028 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 107-323 |
| Cow position: | chrX:7425356-7425135 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 109-234 |
| Cow position: | chrX:8797136-8797010 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 109-236 |
| Cow position: | chrX:17541852-17541724 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 110-323 |
| Cow position: | chrX:33519505-33519284 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 152-303 |
| Cow position: | chrX:37119445-37119294 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 45, 124 |
Show alignments to all cow chromosomes.