Cow genome map
| Conread name: | Utr2-C0001808_O02 |
| Conread position: | 1-336 |
| Cow position: | chr17:22498868-22498533 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 119, 104 |
| Conread position: | 1-404 |
| Cow position: | chr17:41440596-41440193 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 379, 373 |
| Conread position: | 1-415 |
| Cow position: | chr17:22498952-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 197, 206 |
| Conread position: | 1-428 |
| Cow position: | chr17:22452106-22451679 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 122, 127 |
| Conread position: | 1-436 |
| Cow position: | chr17:22589827-22589392 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 274 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 114, 106 |
| Conread position: | 1-437 |
| Cow position: | chr17:22499372-22498936 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-437 |
| Cow position: | chr17:22552577-22552141 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-437 |
| Cow position: | chr17:22552829-22552393 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 210 |
| Conread position: | 1-437 |
| Cow position: | chr17:22590079-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 276 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 197, 211 |
| Conread position: | 1-438 |
| Cow position: | chr17:22551989-22551552 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 175, 202 |
| Conread position: | 1-438 |
| Cow position: | chr17:41440848-41440411 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-438 |
| Cow position: | chr17:41441100-41440663 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 401, 396 |
| Conread position: | 1-440 |
| Cow position: | chr17:22452190-22451751 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 280 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 206, 210 |
| Conread position: | 1-440 |
| Cow position: | chr17:22590247-22589808 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 280 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 177, 199 |
| Conread position: | 1-440 |
| Cow position: | chr17:41440932-41440493 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 126, 114 |
| Conread position: | 1-441 |
| Cow position: | chr17:22473357-22473797 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 117 |
| Conread position: | 1-444 |
| Cow position: | chr17:22499120-22498677 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 350 |
| Conread position: | 1-444 |
| Cow position: | chr17:22552745-22552302 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 122 |
| Conread position: | 1-449 |
| Cow position: | chr17:22452358-22451910 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 379 |
| Conread position: | 1-455 |
| Cow position: | chr17:22552157-22551703 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 276, 259 |
| Conread position: | 1-455 |
| Cow position: | chr17:41441016-41440562 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 268 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 211, 198 |
| Conread position: | 1-464 |
| Cow position: | chr17:22499288-22498825 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-464 |
| Cow position: | chr17:22552073-22551610 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 188 |
| Conread position: | 1-464 |
| Cow position: | chr17:22552241-22551778 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 122, 127 |
| Conread position: | 1-464 |
| Cow position: | chr17:22552493-22552030 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 127 |
| Conread position: | 1-464 |
| Cow position: | chr17:22553081-22552618 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 280 |
| Conread position: | 1-464 |
| Cow position: | chr17:22589995-22589532 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 212 |
| Conread position: | 2-464 |
| Cow position: | chr17:22499035-22498573 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-270 |
| Cow position: | chr17:22473696-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 230, 0 |
| Conread position: | 4-438 |
| Cow position: | chr17:22552322-22551888 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 4-438 |
| Cow position: | chr17:41440677-41440243 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 122, 111 |
| Conread position: | 4-439 |
| Cow position: | chr17:22452271-22451836 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 292 |
| Conread position: | 14-459 |
| Cow position: | chr17:22452513-22452068 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-439 |
| Cow position: | chr17:22473219-22473627 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 147, 44 |
| Conread position: | 28-439 |
| Cow position: | chr17:22590136-22589725 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 261 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-449 |
| Cow position: | chr17:22499424-22499008 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-416 |
| Cow position: | chr17:22551867-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-438 |
| Cow position: | chr17:22552959-22552560 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 257 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 340, 334 |
| Conread position: | 39-442 |
| Cow position: | chr17:22590293-22589890 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 332, 319 |
| Conread position: | 41-464 |
| Cow position: | chr17:22499164-22498741 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-441 |
| Cow position: | chr17:22452401-22452002 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 223 |
| Conread position: | 43-464 |
| Cow position: | chr17:22473483-22473904 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-427 |
| Cow position: | chr17:22473571-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 155 |
| Conread position: | 85-456 |
| Cow position: | chr17:41441100-41440729 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 122-455 |
| Cow position: | chr17:22499419-22499086 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 149-441 |
| Cow position: | chr17:22473175-22473461 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 69, 28 |
| Conread position: | 235-457 |
| Cow position: | chr17:41441118-41440896 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 286-464 |
| Cow position: | chr17:22499423-22499245 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.