Cow genome map
| Conread name: | Utr2-C0001808_O02 |
| Conread position: | 1-327 |
| Cow position: | chr19:20678479-20678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 119, 110 |
| Conread position: | 1-393 |
| Cow position: | chr19:14940684-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 379, 373 |
| Conread position: | 1-422 |
| Cow position: | chr19:20635441-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 1-423 |
| Cow position: | chr19:14959711-14959292 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 374, 60 |
| Conread position: | 1-425 |
| Cow position: | chr19:14940432-14940856 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-431 |
| Cow position: | chr19:14940180-14940610 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-431 |
| Cow position: | chr19:14959545-14959124 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 206, 196 |
| Conread position: | 1-431 |
| Cow position: | chr19:14960033-14959619 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 127, 122 |
| Conread position: | 1-437 |
| Cow position: | chr19:14940096-14940533 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 0 |
| Conread position: | 1-437 |
| Cow position: | chr19:20678227-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 220 |
| Conread position: | 1-437 |
| Cow position: | chr19:20678311-20678744 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 295 |
| Conread position: | 1-438 |
| Cow position: | chr19:20677639-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 356 |
| Conread position: | 1-439 |
| Cow position: | chr19:20677891-20678329 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 105 |
| Conread position: | 1-439 |
| Cow position: | chr19:23614128-23614566 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 109 |
| Conread position: | 1-440 |
| Cow position: | chr19:14940348-14940787 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 184 |
| Conread position: | 1-440 |
| Cow position: | chr19:14948442-14948004 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 379, 38 |
| Conread position: | 1-440 |
| Cow position: | chr19:20635609-20635170 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 198 |
| Conread position: | 1-440 |
| Cow position: | chr19:23596888-23597324 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 157, 144 |
| Conread position: | 1-440 |
| Cow position: | chr19:23614044-23614483 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 201 |
| Conread position: | 1-440 |
| Cow position: | chr19:23614548-23614987 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 199 |
| Conread position: | 1-440 |
| Cow position: | chr19:23649662-23650101 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-440 |
| Cow position: | chr19:43570200-43569761 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 113, 118 |
| Conread position: | 1-441 |
| Cow position: | chr19:14960199-14959763 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-441 |
| Cow position: | chr19:20677471-20677911 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 109 |
| Conread position: | 1-441 |
| Cow position: | chr19:43570358-43569928 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 80 |
| Conread position: | 1-443 |
| Cow position: | chr19:20677723-20678165 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 122 |
| Conread position: | 1-449 |
| Cow position: | chr19:14940600-14941048 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 121 |
| Conread position: | 1-450 |
| Cow position: | chr19:20678143-20678592 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 32 |
| Conread position: | 1-455 |
| Cow position: | chr19:23613540-23613994 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 1-455 |
| Cow position: | chr19:23614632-23615086 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 115 |
| Conread position: | 1-455 |
| Cow position: | chr19:23649578-23650032 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 291 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 113, 118 |
| Conread position: | 1-455 |
| Cow position: | chr19:23649746-23650200 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-460 |
| Cow position: | chr19:14959377-14958933 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 288 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 1-462 |
| Cow position: | chr19:23597305-23597766 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 369 |
| Conread position: | 1-464 |
| Cow position: | chr19:14940012-14940475 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-464 |
| Cow position: | chr19:14940264-14940727 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 158 |
| Conread position: | 1-464 |
| Cow position: | chr19:14960367-14959906 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-464 |
| Cow position: | chr19:20677807-20678270 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 223 |
| Conread position: | 1-464 |
| Cow position: | chr19:23597137-23597600 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-464 |
| Cow position: | chr19:23597221-23597684 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-464 |
| Cow position: | chr19:23613792-23614255 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 112 |
| Conread position: | 1-464 |
| Cow position: | chr19:23649914-23650377 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 370 |
| Conread position: | 1-464 |
| Cow position: | chr19:43570116-43569657 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 0 |
| Conread position: | 3-316 |
| Cow position: | chr19:23650168-23650481 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 111, 115 |
| Conread position: | 3-439 |
| Cow position: | chr19:23650000-23650436 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 366 |
| Conread position: | 3-440 |
| Cow position: | chr19:23613374-23613811 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 196 |
| Conread position: | 4-309 |
| Cow position: | chr19:23614803-23615108 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-405 |
| Cow position: | chr19:23650085-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 8-398 |
| Cow position: | chr19:14959212-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 19, 93 |
| Conread position: | 26-322 |
| Cow position: | chr19:14959115-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-441 |
| Cow position: | chr19:23649436-23649850 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 400, 407 |
| Conread position: | 32-439 |
| Cow position: | chr19:23613655-23614062 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 169 |
| Conread position: | 33-464 |
| Cow position: | chr19:23597085-23597516 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 170 |
| Conread position: | 41-405 |
| Cow position: | chr19:23614756-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 349, 0 |
| Conread position: | 41-439 |
| Cow position: | chr19:23613496-23613894 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 41-455 |
| Cow position: | chr19:23614420-23614834 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 327 |
| Conread position: | 42-439 |
| Cow position: | chr19:20677596-20677993 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 77 |
| Conread position: | 42-440 |
| Cow position: | chr19:23614337-23614735 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 42-442 |
| Cow position: | chr19:23649871-23650271 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-438 |
| Cow position: | chr19:43570242-43569847 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 71, 77 |
| Conread position: | 43-440 |
| Cow position: | chr19:20635483-20635086 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 76 |
| Conread position: | 43-440 |
| Cow position: | chr19:23613918-23614315 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 319 |
| Conread position: | 43-453 |
| Cow position: | chr19:14948484-14948074 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 80 |
| Conread position: | 48-440 |
| Cow position: | chr19:23649289-23649681 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 60, 71 |
| Conread position: | 51-440 |
| Cow position: | chr19:14959252-14958869 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 51-455 |
| Cow position: | chr19:43570392-43569998 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 274 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 68, 54 |
| Conread position: | 52-438 |
| Cow position: | chr19:23649545-23649931 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 146, 151 |
| Conread position: | 55-440 |
| Cow position: | chr19:20635639-20635254 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 75 |
| Conread position: | 55-442 |
| Cow position: | chr19:20677441-20677828 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 156, 140 |
| Conread position: | 59-458 |
| Cow position: | chr19:14960477-14960080 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 0 |
| Conread position: | 61-440 |
| Cow position: | chr19:14939988-14940367 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-441 |
| Cow position: | chr19:23613351-23613728 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 202 |
| Conread position: | 81-455 |
| Cow position: | chr19:23613284-23613658 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 117, 122 |
| Conread position: | 85-444 |
| Cow position: | chr19:14959711-14959354 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 65, 57 |
| Conread position: | 139-443 |
| Cow position: | chr19:20677441-20677745 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 49, 61 |
| Conread position: | 151-455 |
| Cow position: | chr19:14939994-14940298 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 205-464 |
| Cow position: | chr19:14960415-14960156 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 211-464 |
| Cow position: | chr19:14948484-14948232 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 223-455 |
| Cow position: | chr19:20677441-20677673 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 153, 139 |
| Conread position: | 223-464 |
| Cow position: | chr19:20635639-20635398 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.