Cow genome map
| Conread name: | Utr2-C0001808_O02 |
| Conread position: | 1-228 |
| Cow position: | chr23:24546888-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-242 |
| Cow position: | chr23:24654139-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-338 |
| Cow position: | chr23:24639742-24640079 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 278, 259 |
| Conread position: | 1-358 |
| Cow position: | chr23:24522546-24522189 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 107, 118 |
| Conread position: | 1-393 |
| Cow position: | chr23:24547056-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 106 |
| Conread position: | 1-406 |
| Cow position: | chr23:25660341-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-408 |
| Cow position: | chr23:24560532-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-415 |
| Cow position: | chr23:25724105-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 122 |
| Conread position: | 1-417 |
| Cow position: | chr23:24639658-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-418 |
| Cow position: | chr23:25698634-25698217 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 276 |
| Conread position: | 1-423 |
| Cow position: | chr23:24626330-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 277 |
| Conread position: | 1-437 |
| Cow position: | chr23:25626556-25626989 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 29 |
| Conread position: | 1-439 |
| Cow position: | chr23:24535855-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 0 |
| Conread position: | 1-441 |
| Cow position: | chr23:25626136-25626576 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 118 |
| Conread position: | 1-441 |
| Cow position: | chr23:25660257-25660697 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 129 |
| Conread position: | 1-444 |
| Cow position: | chr23:24560700-24560257 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-450 |
| Cow position: | chr23:24560868-24560419 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 264 |
| Conread position: | 1-464 |
| Cow position: | chr23:24536023-24535560 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 196 |
| Conread position: | 1-464 |
| Cow position: | chr23:24547140-24546677 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 106 |
| Conread position: | 1-464 |
| Cow position: | chr23:24547308-24546845 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 199 |
| Conread position: | 1-464 |
| Cow position: | chr23:24639238-24639701 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 151 |
| Conread position: | 1-464 |
| Cow position: | chr23:24639406-24639869 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 264 |
| Conread position: | 1-464 |
| Cow position: | chr23:24639574-24640037 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 188 |
| Conread position: | 1-464 |
| Cow position: | chr23:25626220-25626680 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 123 |
| Conread position: | 1-464 |
| Cow position: | chr23:25626472-25626932 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 64 |
| Conread position: | 1-464 |
| Cow position: | chr23:25660173-25660636 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 213 |
| Conread position: | 1-464 |
| Cow position: | chr23:25698550-25698087 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 275 |
| Conread position: | 2-459 |
| Cow position: | chr23:24535938-24535481 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 363 |
| Conread position: | 3-408 |
| Cow position: | chr23:25626639-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 200, 187 |
| Conread position: | 3-464 |
| Cow position: | chr23:24560782-24560321 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-393 |
| Cow position: | chr23:25698463-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 140, 155 |
| Conread position: | 4-437 |
| Cow position: | chr23:25626055-25626488 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 272 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 174, 198 |
| Conread position: | 4-440 |
| Cow position: | chr23:24547221-24546785 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 112 |
| Conread position: | 4-464 |
| Cow position: | chr23:24560613-24560153 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-326 |
| Cow position: | chr23:24654080-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-464 |
| Cow position: | chr23:24522684-24522251 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 29-428 |
| Cow position: | chr23:24522767-24522371 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 261 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 331, 155 |
| Conread position: | 29-464 |
| Cow position: | chr23:24626274-24626709 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 234 |
| Conread position: | 31-464 |
| Cow position: | chr23:25698688-25698255 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 92 |
| Conread position: | 33-441 |
| Cow position: | chr23:24522598-24522190 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 265 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 331, 326 |
| Conread position: | 35-437 |
| Cow position: | chr23:24639188-24639590 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 193, 201 |
| Conread position: | 38-451 |
| Cow position: | chr23:25626005-25626418 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 243 |
| Conread position: | 47-464 |
| Cow position: | chr23:24536061-24535644 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 58-441 |
| Cow position: | chr23:25660146-25660529 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 207 |
| Conread position: | 59-352 |
| Cow position: | chr23:24521982-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 59-464 |
| Cow position: | chr23:24547334-24546929 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 206 |
| Conread position: | 64-439 |
| Cow position: | chr23:24522814-24522444 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 64-464 |
| Cow position: | chr23:24560889-24560489 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 159 |
| Conread position: | 73-406 |
| Cow position: | chr23:24654043-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 206, 192 |
| Conread position: | 85-450 |
| Cow position: | chr23:25724105-25723740 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 157-464 |
| Cow position: | chr23:24654043-24654350 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 122, 108 |
| Conread position: | 171-464 |
| Cow position: | chr23:25724103-25723810 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 225-464 |
| Cow position: | chr23:25660145-25660384 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 232-464 |
| Cow position: | chr23:24654033-24654266 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 253-464 |
| Cow position: | chr23:25724105-25723894 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 126, 121 |
Show alignments to all cow chromosomes.