Cow genome map

Conread name: Utr2-C0001808_O02

Conread position: 1-229
Cow position: chr25:33145203-33145431 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 147
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-331
Cow position: chr25:33127907-33128237 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 214
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 1-348
Cow position: chr25:33305777-33305433 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 218
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 119, 53

Conread position: 1-388
Cow position: chr25:23420488-23420875 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 252
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 112, 117

Conread position: 1-393
Cow position: chr25:346469-346861 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 239
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 174, 205

Conread position: 1-402
Cow position: chr25:33127823-33128224 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-405
Cow position: chr25:34732587-34732183 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 248
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 1-418
Cow position: chr25:36801564-36801977 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 259
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 379, 374

Conread position: 1-431
Cow position: chr25:33157200-33156769 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 420, 408

Conread position: 1-431
Cow position: chr25:33299340-33299770 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 272
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 102, 116

Conread position: 1-438
Cow position: chr25:25652377-25652814 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 264
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 126, 112

Conread position: 1-438
Cow position: chr25:33298752-33299189 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 275
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 107, 115

Conread position: 1-438
Cow position: chr25:33298920-33299357 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 276
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 354, 364

Conread position: 1-438
Cow position: chr25:33299172-33299609 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 269
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 107, 116

Conread position: 1-438
Cow position: chr25:33306277-33305842 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 284
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 198, 89

Conread position: 1-439
Cow position: chr25:25652293-25652731 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 267
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 124, 114

Conread position: 1-439
Cow position: chr25:33144870-33145305 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 282
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 148, 141

Conread position: 1-440
Cow position: chr25:23420404-23420843 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 117

Conread position: 1-441
Cow position: chr25:34769935-34769495 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-443
Cow position: chr25:34447127-34447569 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 113

Conread position: 1-450
Cow position: chr25:34447379-34447820 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 116

Conread position: 1-455
Cow position: chr25:33127739-33128193 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-455
Cow position: chr25:33157452-33156998 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-455
Cow position: chr25:33305381-33304931 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 290
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 340, 63

Conread position: 1-455
Cow position: chr25:34769683-34769230 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 450, 0

Conread position: 1-456
Cow position: chr25:34769851-34769396 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 374

Conread position: 1-459
Cow position: chr25:33157284-33156826 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-464
Cow position: chr25:23420320-23420783 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 115

Conread position: 1-464
Cow position: chr25:33157368-33156905 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-464
Cow position: chr25:34732251-34731788 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 279
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 149, 143

Conread position: 1-464
Cow position: chr25:34769767-34769304 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 369

Conread position: 1-464
Cow position: chr25:34770019-34769556 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-308
Cow position: chr25:34714224-34714530 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 195
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 117, 110

Conread position: 2-437
Cow position: chr25:34713888-34714323 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 260
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 119, 107

Conread position: 2-450
Cow position: chr25:34447296-34447742 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 200

Conread position: 3-431
Cow position: chr25:36801482-36801910 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 271
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 111, 125

Conread position: 3-438
Cow position: chr25:33298586-33299021 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 273
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 105, 115

Conread position: 3-464
Cow position: chr25:34447045-34447506 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-304
Cow position: chr25:34732080-34731780 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 193
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 104, 112

Conread position: 4-320
Cow position: chr25:326947-327263 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 202
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 123, 110

Conread position: 4-394
Cow position: chr25:33145038-33145428 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 252
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 4-432
Cow position: chr25:33298839-33299267 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 275
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 104, 115

Conread position: 4-438
Cow position: chr25:33298671-33299105 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 273
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 99, 112

Conread position: 4-441
Cow position: chr25:33144957-33145391 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 283
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 62, 55

Conread position: 4-449
Cow position: chr25:22235853-22236298 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 264
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 116, 101

Conread position: 4-458
Cow position: chr25:34763270-34763721 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 267
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 197, 0

Conread position: 4-464
Cow position: chr25:34762853-34763310 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 273
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 104, 115

Conread position: 27-455
Cow position: chr25:36801338-36801766 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 270
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 174, 156

Conread position: 28-358
Cow position: chr25:18642207-18641874 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 219
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 80, 91

Conread position: 33-455
Cow position: chr25:33299288-33299710 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 273
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 150, 168

Conread position: 34-464
Cow position: chr25:34714088-34714518 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 279
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 86, 75

Conread position: 38-464
Cow position: chr25:33305426-33305006 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 275
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 383, 20

Conread position: 39-436
Cow position: chr25:36800690-36801087 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 241
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 39-464
Cow position: chr25:34433499-34433920 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 269
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 165, 108

Conread position: 39-464
Cow position: chr25:34770149-34769724 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 42-394
Cow position: chr25:34714180-34714532 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 224
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 87, 81

Conread position: 42-432
Cow position: chr25:36800945-36801335 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 238
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 338, 324

Conread position: 42-464
Cow position: chr25:34770062-34769640 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 77

Conread position: 43-392
Cow position: chr25:366704-367053 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 209
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 43-464
Cow position: chr25:33157494-33157073 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 43-464
Cow position: chr25:34447001-34447422 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 45-268
Cow position: chr25:34433001-34433224 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 51-318
Cow position: chr25:33145169-33145436 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 171
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 52-438
Cow position: chr25:25652260-25652646 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 228
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 55-438
Cow position: chr25:25652935-25653318 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 234
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 74, 60

Conread position: 55-439
Cow position: chr25:36800874-36801258 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 240
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 158, 153

Conread position: 55-455
Cow position: chr25:36800790-36801190 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 249
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 313, 298

Conread position: 56-464
Cow position: chr25:33306055-33305654 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 259
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 50, 63

Conread position: 58-437
Cow position: chr25:34732614-34732235 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 247
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 120, 142

Conread position: 58-438
Cow position: chr25:36801453-36801833 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 240
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 68, 46

Conread position: 59-464
Cow position: chr25:346443-346848 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 247
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 191, 198

Conread position: 61-441
Cow position: chr25:33144846-33145223 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 249
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 171, 166

Conread position: 64-393
Cow position: chr25:34732104-34731775 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 216
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 115, 136

Conread position: 64-431
Cow position: chr25:22235829-22236197 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 230
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 64, 49

Conread position: 64-438
Cow position: chr25:25652188-25652562 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 229
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 44, 49

Conread position: 64-440
Cow position: chr25:34446938-34447314 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 310

Conread position: 65-458
Cow position: chr25:3663932-3664325 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 231
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 314, 308

Conread position: 66-438
Cow position: chr25:33298565-33298937 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 242
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 205, 215

Conread position: 67-440
Cow position: chr25:34714037-34714410 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 240
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 41, 48

Conread position: 78-439
Cow position: chr25:33127732-33128093 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 88-406
Cow position: chr25:326947-327265 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 207
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 40, 36

Conread position: 115-360
Cow position: chr25:34432987-34433233 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 163
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 62, 75

Conread position: 142-455
Cow position: chr25:34732614-34732301 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 206
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 40, 48

Conread position: 149-464
Cow position: chr25:366726-367041 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 195
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 48

Conread position: 175-455
Cow position: chr25:326951-327230 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 183
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 121, 24

Conread position: 202-455
Cow position: chr25:34446992-34447245 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 202-464
Cow position: chr25:33127772-33128034 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 210-428
Cow position: chr25:34763224-34763442 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 141
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 220-451
Cow position: chr25:33127707-33127937 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 5, 0

Conread position: 225-464
Cow position: chr25:34732615-34732376 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 160
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 217, 229

Conread position: 233-455
Cow position: chr25:34446939-34447161 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 147
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.