Cow genome map
| Conread name: | Utr2-C0001808_O02 |
| Conread position: | 1-308 |
| Cow position: | chr28:7758025-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 270, 280 |
| Conread position: | 1-336 |
| Cow position: | chr28:7810612-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 120, 96 |
| Conread position: | 1-346 |
| Cow position: | chr28:9290357-9290700 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-358 |
| Cow position: | chr28:34673376-34673733 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 118, 106 |
| Conread position: | 1-407 |
| Cow position: | chr28:33210249-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 313, 0 |
| Conread position: | 1-416 |
| Cow position: | chr28:34696185-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 139, 121 |
| Conread position: | 1-419 |
| Cow position: | chr28:7810528-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-425 |
| Cow position: | chr28:9290273-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-437 |
| Cow position: | chr28:7757605-7758041 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 370 |
| Conread position: | 1-437 |
| Cow position: | chr28:9299088-9299510 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 194, 98 |
| Conread position: | 1-438 |
| Cow position: | chr28:7757521-7757958 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 264 |
| Conread position: | 1-438 |
| Cow position: | chr28:7757773-7758210 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 294 |
| Conread position: | 1-438 |
| Cow position: | chr28:7757857-7758294 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-441 |
| Cow position: | chr28:7757437-7757877 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 93 |
| Conread position: | 1-464 |
| Cow position: | chr28:7810285-7810739 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 297 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 117, 99 |
| Conread position: | 1-464 |
| Cow position: | chr28:7810453-7810907 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 294 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 278, 84 |
| Conread position: | 1-464 |
| Cow position: | chr28:9253040-9253503 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 115 |
| Conread position: | 1-464 |
| Cow position: | chr28:9253124-9253587 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 106 |
| Conread position: | 3-330 |
| Cow position: | chr28:9253294-9253622 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 116, 104 |
| Conread position: | 3-440 |
| Cow position: | chr28:7757691-7758128 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 355 |
| Conread position: | 4-426 |
| Cow position: | chr28:11333945-11333523 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 124, 109 |
| Conread position: | 4-431 |
| Cow position: | chr28:9298758-9299182 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 118, 60 |
| Conread position: | 4-431 |
| Cow position: | chr28:11334113-11333685 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 269 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 425, 0 |
| Conread position: | 4-439 |
| Cow position: | chr28:9253211-9253647 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 367 |
| Conread position: | 4-440 |
| Cow position: | chr28:34696020-34696456 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 123, 110 |
| Conread position: | 4-455 |
| Cow position: | chr28:34695852-34696303 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 117, 110 |
| Conread position: | 4-455 |
| Cow position: | chr28:34695936-34696387 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 4-455 |
| Cow position: | chr28:34696104-34696555 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 125, 111 |
| Conread position: | 26-455 |
| Cow position: | chr28:11333839-11333416 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 151, 178 |
| Conread position: | 27-455 |
| Cow position: | chr28:33210194-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 18 |
| Conread position: | 28-441 |
| Cow position: | chr28:7758136-7758533 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 335, 200 |
| Conread position: | 28-464 |
| Cow position: | chr28:9299031-9299453 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 284 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 243, 155 |
| Conread position: | 39-438 |
| Cow position: | chr28:9252909-9253309 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 41-437 |
| Cow position: | chr28:9299282-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 67, 87 |
| Conread position: | 41-455 |
| Cow position: | chr28:34679499-34679093 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 274 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 146, 107 |
| Conread position: | 42-441 |
| Cow position: | chr28:9290066-9290460 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 42, 57 |
| Conread position: | 43-394 |
| Cow position: | chr28:7757983-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 43-424 |
| Cow position: | chr28:7758387-7758768 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 68, 64 |
| Conread position: | 43-451 |
| Cow position: | chr28:9290151-9290553 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 43-455 |
| Cow position: | chr28:11334242-11333830 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 45-444 |
| Cow position: | chr28:11334156-11333757 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 158 |
| Conread position: | 45-456 |
| Cow position: | chr28:34695809-34696220 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 177, 161 |
| Conread position: | 47-455 |
| Cow position: | chr28:7757399-7757807 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-406 |
| Cow position: | chr28:9299218-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 64-464 |
| Cow position: | chr28:7758324-7758724 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 127, 139 |
| Conread position: | 66-464 |
| Cow position: | chr28:7757334-7757732 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 213, 194 |
| Conread position: | 73-441 |
| Cow position: | chr28:34673364-34673732 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 109, 138 |
| Conread position: | 118-464 |
| Cow position: | chr28:34679588-34679241 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 93, 42 |
| Conread position: | 127-455 |
| Cow position: | chr28:9252913-9253242 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 28, 155 |
| Conread position: | 151-464 |
| Cow position: | chr28:33210231-33210544 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 239-441 |
| Cow position: | chr28:34673362-34673564 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 118, 139 |
Show alignments to all cow chromosomes.