Cow genome map
| Conread name: | Utr2-C0001808_O02 |
| Conread position: | 1-192 |
| Cow position: | chr7:8325930-8326121 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 1-310 |
| Cow position: | chr7:42878583-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 278, 264 |
| Conread position: | 1-316 |
| Cow position: | chr7:11600746-11600430 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 211, 193 |
| Conread position: | 1-354 |
| Cow position: | chr7:1439912-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-357 |
| Cow position: | chr7:8243743-8244096 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-419 |
| Cow position: | chr7:11434949-11434545 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 1-428 |
| Cow position: | chr7:1014792-1015219 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 369 |
| Conread position: | 1-437 |
| Cow position: | chr7:42878835-42878399 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-438 |
| Cow position: | chr7:8277869-8278306 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 289 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 1-438 |
| Cow position: | chr7:18390351-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 201 |
| Conread position: | 1-438 |
| Cow position: | chr7:42878919-42878482 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-438 |
| Cow position: | chr7:42879087-42878650 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-440 |
| Cow position: | chr7:1014960-1015399 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 202 |
| Conread position: | 1-440 |
| Cow position: | chr7:3179886-3180325 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 117 |
| Conread position: | 1-440 |
| Cow position: | chr7:18390267-18390706 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 117 |
| Conread position: | 1-441 |
| Cow position: | chr7:1014378-1014812 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 109, 117 |
| Conread position: | 1-441 |
| Cow position: | chr7:42879003-42878563 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 266 |
| Conread position: | 1-442 |
| Cow position: | chr7:1014546-1014981 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 197, 104 |
| Conread position: | 1-442 |
| Cow position: | chr7:3180054-3180495 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 350 |
| Conread position: | 1-442 |
| Cow position: | chr7:8243072-8243512 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 288 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 198, 191 |
| Conread position: | 1-442 |
| Cow position: | chr7:8243491-8243932 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 127, 109 |
| Conread position: | 1-442 |
| Cow position: | chr7:8277449-8277890 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 127, 118 |
| Conread position: | 1-442 |
| Cow position: | chr7:8325174-8325615 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 116 |
| Conread position: | 1-443 |
| Cow position: | chr7:8277281-8277723 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 284 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 103, 127 |
| Conread position: | 1-443 |
| Cow position: | chr7:8278289-8278722 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 1-443 |
| Cow position: | chr7:8324838-8325280 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 289 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 1-443 |
| Cow position: | chr7:8325426-8325868 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 291 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 1-455 |
| Cow position: | chr7:3180390-3180843 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 202 |
| Conread position: | 1-455 |
| Cow position: | chr7:8277365-8277819 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 32 |
| Conread position: | 1-464 |
| Cow position: | chr7:3179802-3180265 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 107 |
| Conread position: | 1-464 |
| Cow position: | chr7:3179970-3180433 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 118 |
| Conread position: | 1-464 |
| Cow position: | chr7:3180222-3180685 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 304 |
| Conread position: | 2-441 |
| Cow position: | chr7:8243241-8243679 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 112, 116 |
| Conread position: | 2-442 |
| Cow position: | chr7:8242905-8243345 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 2-444 |
| Cow position: | chr7:8325679-8326121 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 108 |
| Conread position: | 3-440 |
| Cow position: | chr7:42879169-42878732 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 116 |
| Conread position: | 3-464 |
| Cow position: | chr7:42879253-42878792 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 199 |
| Conread position: | 4-400 |
| Cow position: | chr7:11600827-11600430 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 390, 0 |
| Conread position: | 4-410 |
| Cow position: | chr7:1015047-1015453 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 261 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 110, 114 |
| Conread position: | 4-439 |
| Cow position: | chr7:3180141-3180576 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 355 |
| Conread position: | 4-440 |
| Cow position: | chr7:11601079-11600643 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-442 |
| Cow position: | chr7:8324757-8325195 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 4-443 |
| Cow position: | chr7:8324925-8325364 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 4-455 |
| Cow position: | chr7:42878664-42878212 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 415 |
| Conread position: | 4-459 |
| Cow position: | chr7:18390186-18390641 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 199 |
| Conread position: | 27-441 |
| Cow position: | chr7:8277811-8278225 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 101, 84 |
| Conread position: | 27-441 |
| Cow position: | chr7:11434686-11434278 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 85 |
| Conread position: | 28-440 |
| Cow position: | chr7:3179661-3180073 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 28-440 |
| Cow position: | chr7:11601139-11600727 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 268 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 175, 163 |
| Conread position: | 33-442 |
| Cow position: | chr7:3179750-3180159 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 159 |
| Conread position: | 38-438 |
| Cow position: | chr7:42879386-42878986 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 70, 82 |
| Conread position: | 38-440 |
| Cow position: | chr7:11601213-11600811 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-392 |
| Cow position: | chr7:1014248-1014601 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 69, 79 |
| Conread position: | 40-442 |
| Cow position: | chr7:8243698-8244097 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 243, 256 |
| Conread position: | 42-424 |
| Cow position: | chr7:1438311-1438693 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 72, 77 |
| Conread position: | 42-437 |
| Cow position: | chr7:1439869-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 260 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 242, 102 |
| Conread position: | 42-438 |
| Cow position: | chr7:1439448-1439846 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 66, 74 |
| Conread position: | 42-443 |
| Cow position: | chr7:8325383-8325784 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 86, 65 |
| Conread position: | 42-450 |
| Cow position: | chr7:18390140-18390548 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-456 |
| Cow position: | chr7:18390056-18390470 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 78 |
| Conread position: | 43-328 |
| Cow position: | chr7:11434508-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 71, 85 |
| Conread position: | 43-437 |
| Cow position: | chr7:11600956-11600562 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 182 |
| Conread position: | 43-444 |
| Cow position: | chr7:8325048-8325449 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 153 |
| Conread position: | 44-443 |
| Cow position: | chr7:11434990-11434605 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 6, 18 |
| Conread position: | 47-439 |
| Cow position: | chr7:11600868-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 61-442 |
| Cow position: | chr7:8243383-8243764 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 149, 136 |
| Conread position: | 64-438 |
| Cow position: | chr7:42879276-42878902 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 66-443 |
| Cow position: | chr7:8324735-8325112 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 84, 51 |
| Conread position: | 88-428 |
| Cow position: | chr7:28846447-28846787 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 127-358 |
| Cow position: | chr7:11434508-11434277 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 71, 84 |
| Conread position: | 144-443 |
| Cow position: | chr7:8324729-8325028 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 75, 81 |
| Conread position: | 153-455 |
| Cow position: | chr7:8242804-8243106 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 58 |
| Conread position: | 156-464 |
| Cow position: | chr7:3179705-3180013 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 228-444 |
| Cow position: | chr7:8277256-8277472 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 127, 152 |
Show alignments to all cow chromosomes.