Cow genome map

Conread name: Utr2-C0001808_O02

Conread position: 1-192
Cow position: chr7:8325930-8326121 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 32

Conread position: 1-310
Cow position: chr7:42878583-42878274 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 198
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 278, 264

Conread position: 1-316
Cow position: chr7:11600746-11600430 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 208
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 211, 193

Conread position: 1-354
Cow position: chr7:1439912-1440264 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 217
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 1-357
Cow position: chr7:8243743-8244096 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 222
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 253, 0

Conread position: 1-419
Cow position: chr7:11434949-11434545 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 267
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 25

Conread position: 1-428
Cow position: chr7:1014792-1015219 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 369

Conread position: 1-437
Cow position: chr7:42878835-42878399 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-438
Cow position: chr7:8277869-8278306 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 289
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 42, 26

Conread position: 1-438
Cow position: chr7:18390351-18390788 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 201

Conread position: 1-438
Cow position: chr7:42878919-42878482 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-438
Cow position: chr7:42879087-42878650 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-440
Cow position: chr7:1014960-1015399 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 202

Conread position: 1-440
Cow position: chr7:3179886-3180325 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 117

Conread position: 1-440
Cow position: chr7:18390267-18390706 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 117

Conread position: 1-441
Cow position: chr7:1014378-1014812 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 287
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 109, 117

Conread position: 1-441
Cow position: chr7:42879003-42878563 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 266

Conread position: 1-442
Cow position: chr7:1014546-1014981 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 269
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 197, 104

Conread position: 1-442
Cow position: chr7:3180054-3180495 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 350

Conread position: 1-442
Cow position: chr7:8243072-8243512 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 288
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 198, 191

Conread position: 1-442
Cow position: chr7:8243491-8243932 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 275
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 127, 109

Conread position: 1-442
Cow position: chr7:8277449-8277890 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 285
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 127, 118

Conread position: 1-442
Cow position: chr7:8325174-8325615 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 116

Conread position: 1-443
Cow position: chr7:8277281-8277723 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 284
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 103, 127

Conread position: 1-443
Cow position: chr7:8278289-8278722 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 274
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 37, 53

Conread position: 1-443
Cow position: chr7:8324838-8325280 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 289
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 34, 27

Conread position: 1-443
Cow position: chr7:8325426-8325868 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 291
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 44, 32

Conread position: 1-455
Cow position: chr7:3180390-3180843 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 202

Conread position: 1-455
Cow position: chr7:8277365-8277819 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 32

Conread position: 1-464
Cow position: chr7:3179802-3180265 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 107

Conread position: 1-464
Cow position: chr7:3179970-3180433 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 118

Conread position: 1-464
Cow position: chr7:3180222-3180685 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 304

Conread position: 2-441
Cow position: chr7:8243241-8243679 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 278
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 112, 116

Conread position: 2-442
Cow position: chr7:8242905-8243345 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 285
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 43, 25

Conread position: 2-444
Cow position: chr7:8325679-8326121 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 108

Conread position: 3-440
Cow position: chr7:42879169-42878732 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 116

Conread position: 3-464
Cow position: chr7:42879253-42878792 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 199

Conread position: 4-400
Cow position: chr7:11600827-11600430 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 256
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 390, 0

Conread position: 4-410
Cow position: chr7:1015047-1015453 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 261
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 110, 114

Conread position: 4-439
Cow position: chr7:3180141-3180576 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 368, 355

Conread position: 4-440
Cow position: chr7:11601079-11600643 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 4-442
Cow position: chr7:8324757-8325195 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 22

Conread position: 4-443
Cow position: chr7:8324925-8325364 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 24

Conread position: 4-455
Cow position: chr7:42878664-42878212 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 398, 415

Conread position: 4-459
Cow position: chr7:18390186-18390641 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 199

Conread position: 27-441
Cow position: chr7:8277811-8278225 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 271
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 101, 84

Conread position: 27-441
Cow position: chr7:11434686-11434278 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 271
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 18, 85

Conread position: 28-440
Cow position: chr7:3179661-3180073 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 268
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 45, 35

Conread position: 28-440
Cow position: chr7:11601139-11600727 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 268
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 175, 163

Conread position: 33-442
Cow position: chr7:3179750-3180159 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 159

Conread position: 38-438
Cow position: chr7:42879386-42878986 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 256
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 70, 82

Conread position: 38-440
Cow position: chr7:11601213-11600811 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 39-392
Cow position: chr7:1014248-1014601 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 224
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 69, 79

Conread position: 40-442
Cow position: chr7:8243698-8244097 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 263
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 243, 256

Conread position: 42-424
Cow position: chr7:1438311-1438693 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 234
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 72, 77

Conread position: 42-437
Cow position: chr7:1439869-1440263 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 260
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 242, 102

Conread position: 42-438
Cow position: chr7:1439448-1439846 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 252
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 66, 74

Conread position: 42-443
Cow position: chr7:8325383-8325784 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 266
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 86, 65

Conread position: 42-450
Cow position: chr7:18390140-18390548 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 42-456
Cow position: chr7:18390056-18390470 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 78

Conread position: 43-328
Cow position: chr7:11434508-11434223 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 198
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 71, 85

Conread position: 43-437
Cow position: chr7:11600956-11600562 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 182

Conread position: 43-444
Cow position: chr7:8325048-8325449 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 153

Conread position: 44-443
Cow position: chr7:11434990-11434605 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 264
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 6, 18

Conread position: 47-439
Cow position: chr7:11600868-11600476 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 72

Conread position: 61-442
Cow position: chr7:8243383-8243764 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 255
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 149, 136

Conread position: 64-438
Cow position: chr7:42879276-42878902 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 66-443
Cow position: chr7:8324735-8325112 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 251
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 84, 51

Conread position: 88-428
Cow position: chr7:28846447-28846787 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 214
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 16

Conread position: 127-358
Cow position: chr7:11434508-11434277 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 155
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 71, 84

Conread position: 144-443
Cow position: chr7:8324729-8325028 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 207
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 75, 81

Conread position: 153-455
Cow position: chr7:8242804-8243106 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 190
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 58

Conread position: 156-464
Cow position: chr7:3179705-3180013 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 209
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 22, 47

Conread position: 228-444
Cow position: chr7:8277256-8277472 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 147
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 127, 152

Show alignments to all cow chromosomes.