Cow genome map
| Conread name: | Utr2-C0001808_O02 |
| Conread position: | 1-257 |
| Cow position: | chrX:25310331-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 102, 114 |
| Conread position: | 1-334 |
| Cow position: | chrX:29044987-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 120, 108 |
| Conread position: | 1-428 |
| Cow position: | chrX:14181369-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 211, 198 |
| Conread position: | 1-431 |
| Cow position: | chrX:25309743-25310173 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 369 |
| Conread position: | 1-437 |
| Cow position: | chrX:25325230-25324794 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 200 |
| Conread position: | 1-438 |
| Cow position: | chrX:13826675-13826238 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 125, 114 |
| Conread position: | 1-438 |
| Cow position: | chrX:25309995-25310432 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 118 |
| Conread position: | 1-439 |
| Cow position: | chrX:25325062-25324624 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 264 |
| Conread position: | 1-439 |
| Cow position: | chrX:25325146-25324708 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 302 |
| Conread position: | 1-439 |
| Cow position: | chrX:25325734-25325296 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 107, 129 |
| Conread position: | 1-440 |
| Cow position: | chrX:25309827-25310266 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 202 |
| Conread position: | 1-441 |
| Cow position: | chrX:25310079-25310519 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 1-444 |
| Cow position: | chrX:12627460-12627901 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 192, 39 |
| Conread position: | 1-455 |
| Cow position: | chrX:25325314-25324860 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-464 |
| Cow position: | chrX:13826759-13826296 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 117, 113 |
| Conread position: | 1-464 |
| Cow position: | chrX:25324726-25324263 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 292 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 307, 302 |
| Conread position: | 1-464 |
| Cow position: | chrX:25324978-25324515 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 202 |
| Conread position: | 1-464 |
| Cow position: | chrX:25325398-25324935 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 104 |
| Conread position: | 2-439 |
| Cow position: | chrX:25325565-25325128 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-464 |
| Cow position: | chrX:29045238-29044776 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 263 |
| Conread position: | 3-464 |
| Cow position: | chrX:29045153-29044692 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 116 |
| Conread position: | 4-393 |
| Cow position: | chrX:14181282-14180893 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 122, 111 |
| Conread position: | 4-418 |
| Cow position: | chrX:29045068-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 261 |
| Conread position: | 4-439 |
| Cow position: | chrX:13826924-13826489 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 100, 115 |
| Conread position: | 4-455 |
| Cow position: | chrX:25324891-25324440 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 47 |
| Conread position: | 29-435 |
| Cow position: | chrX:29045779-29045372 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 6, 77 |
| Conread position: | 34-341 |
| Cow position: | chrX:25310280-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 87, 73 |
| Conread position: | 34-430 |
| Cow position: | chrX:25325785-25325389 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 257 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 135, 143 |
| Conread position: | 39-464 |
| Cow position: | chrX:25325948-25325523 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 40, 52 |
| Conread position: | 39-464 |
| Cow position: | chrX:29045285-29044860 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-437 |
| Cow position: | chrX:12627667-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 89, 76 |
| Conread position: | 43-406 |
| Cow position: | chrX:25324600-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 239, 222 |
| Conread position: | 43-464 |
| Cow position: | chrX:14181495-14181074 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 57 |
| Conread position: | 53-455 |
| Cow position: | chrX:14181569-14181167 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 76, 54 |
| Conread position: | 54-455 |
| Cow position: | chrX:13826790-13826389 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 124, 149 |
| Conread position: | 55-353 |
| Cow position: | chrX:12627430-12627726 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 48 |
| Conread position: | 58-439 |
| Cow position: | chrX:25325593-25325212 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 204 |
| Conread position: | 73-437 |
| Cow position: | chrX:12627280-12627643 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 110, 130 |
| Conread position: | 79-464 |
| Cow position: | chrX:13826933-13826548 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 85-456 |
| Cow position: | chrX:14181369-14180998 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 131-437 |
| Cow position: | chrX:25309707-25310011 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 246-464 |
| Cow position: | chrX:13826934-13826716 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 126 |
Show alignments to all cow chromosomes.