Cow genome map
| Conread name: | Utr2-C0001808_O10 |
| Conread position: | 1-184 |
| Cow position: | chr17:22473748-22473932 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 1-356 |
| Cow position: | chr17:22451967-22451612 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 179, 186 |
| Conread position: | 1-361 |
| Cow position: | chr17:22498813-22498462 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 272, 0 |
| Conread position: | 1-401 |
| Cow position: | chr17:22589604-22589204 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 54, 50 |
| Conread position: | 1-445 |
| Cow position: | chr17:22452303-22451859 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 318 |
| Conread position: | 1-445 |
| Cow position: | chr17:22551934-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 288 |
| Conread position: | 1-445 |
| Cow position: | chr17:22589940-22589496 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 386 |
| Conread position: | 1-454 |
| Cow position: | chr17:22499317-22498864 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 302 |
| Conread position: | 1-455 |
| Cow position: | chr17:22452387-22451933 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-455 |
| Cow position: | chr17:22499149-22498695 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-455 |
| Cow position: | chr17:22499233-22498779 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 121 |
| Conread position: | 1-455 |
| Cow position: | chr17:22552018-22551564 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 120 |
| Conread position: | 1-455 |
| Cow position: | chr17:22552186-22551732 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-455 |
| Cow position: | chr17:22552270-22551816 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-455 |
| Cow position: | chr17:22552438-22551984 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 66 |
| Conread position: | 1-455 |
| Cow position: | chr17:22552522-22552068 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-455 |
| Cow position: | chr17:22552690-22552236 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 121 |
| Conread position: | 1-455 |
| Cow position: | chr17:22552858-22552404 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-455 |
| Cow position: | chr17:22552942-22552488 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-455 |
| Cow position: | chr17:22553026-22552572 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-455 |
| Cow position: | chr17:22589688-22589234 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 309 |
| Conread position: | 1-455 |
| Cow position: | chr17:22590192-22589738 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 139, 126 |
| Conread position: | 2-447 |
| Cow position: | chr17:22473248-22473690 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 15 |
| Conread position: | 3-348 |
| Cow position: | chr17:22589518-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-444 |
| Cow position: | chr17:22498979-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 215 |
| Conread position: | 3-445 |
| Cow position: | chr17:22473414-22473856 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-447 |
| Cow position: | chr17:22552352-22551908 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 379, 370 |
| Conread position: | 3-454 |
| Cow position: | chr17:22589770-22589319 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 369 |
| Conread position: | 3-454 |
| Cow position: | chr17:22590022-22589571 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 284 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 387, 374 |
| Conread position: | 3-454 |
| Cow position: | chr17:41440791-41440340 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-455 |
| Cow position: | chr17:22452217-22451765 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 383 |
| Conread position: | 3-455 |
| Cow position: | chr17:22473498-22473951 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 118 |
| Conread position: | 3-455 |
| Cow position: | chr17:22552100-22551648 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-455 |
| Cow position: | chr17:22552604-22552152 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-455 |
| Cow position: | chr17:22552772-22552320 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 119 |
| Conread position: | 3-455 |
| Cow position: | chr17:22590106-22589654 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 283 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-455 |
| Cow position: | chr17:22553107-22552656 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-448 |
| Cow position: | chr17:22499061-22498618 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 46 |
| Conread position: | 6-352 |
| Cow position: | chr17:22473585-22473932 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 0 |
| Conread position: | 7-455 |
| Cow position: | chr17:22473334-22473782 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 114 |
| Conread position: | 9-455 |
| Cow position: | chr17:22473174-22473614 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 384, 28 |
| Conread position: | 9-455 |
| Cow position: | chr17:22499393-22498947 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 378 |
| Conread position: | 9-455 |
| Cow position: | chr17:22590268-22589822 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-446 |
| Cow position: | chr17:22452041-22451606 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 12-422 |
| Cow position: | chr17:41441118-41440708 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-455 |
| Cow position: | chr17:22452121-22451681 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-455 |
| Cow position: | chr17:22553143-22552740 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 57-455 |
| Cow position: | chr17:22590304-22589906 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 169 |
| Conread position: | 61-455 |
| Cow position: | chr17:22452411-22452017 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 172-455 |
| Cow position: | chr17:22499398-22499115 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 172-455 |
| Cow position: | chr17:22499477-22499199 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 35, 14 |
Show alignments to all cow chromosomes.