Cow genome map

Conread name: Utr2-C0001808_O10

Conread position: 1-184
Cow position: chr19:23597528-23597711 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-259
Cow position: chr19:14959085-14958827 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 170
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-309
Cow position: chr19:14948304-14947996 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 193
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-339
Cow position: chr19:14940823-14941165 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 229
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 269, 331

Conread position: 1-340
Cow position: chr19:43569977-43569642 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 216
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 244, 0

Conread position: 1-350
Cow position: chr19:23614771-23615118 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 231
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 55, 50

Conread position: 1-361
Cow position: chr19:20678282-20678642 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 230
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 57, 49

Conread position: 1-390
Cow position: chr19:14948388-14947999 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 255
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 275, 265

Conread position: 1-422
Cow position: chr19:14940655-14941076 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 371, 378

Conread position: 1-434
Cow position: chr19:23650053-23650486 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 368, 363

Conread position: 1-435
Cow position: chr19:14960146-14959714 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 0

Conread position: 1-445
Cow position: chr19:14960228-14959788 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 75

Conread position: 1-445
Cow position: chr19:23614351-23614795 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-449
Cow position: chr19:23649717-23650165 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-454
Cow position: chr19:14940403-14940856 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-455
Cow position: chr19:14940067-14940521 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 120

Conread position: 1-455
Cow position: chr19:14940151-14940605 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-455
Cow position: chr19:14940487-14940941 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-455
Cow position: chr19:14959894-14959456 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 289
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 33, 19

Conread position: 1-455
Cow position: chr19:14960312-14959860 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 121

Conread position: 1-455
Cow position: chr19:20635638-20635184 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 285
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 386, 391

Conread position: 1-455
Cow position: chr19:20677862-20678316 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 277
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 161, 143

Conread position: 1-455
Cow position: chr19:23596943-23597394 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 89

Conread position: 1-455
Cow position: chr19:23613847-23614301 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-455
Cow position: chr19:23613931-23614385 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 398

Conread position: 1-455
Cow position: chr19:23614099-23614553 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 120

Conread position: 1-455
Cow position: chr19:23614183-23614637 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 272

Conread position: 1-455
Cow position: chr19:23614267-23614721 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 225

Conread position: 1-455
Cow position: chr19:23614603-23615057 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 143

Conread position: 1-455
Cow position: chr19:43570387-43569943 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 105

Conread position: 3-179
Cow position: chr19:14958999-14958823 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 121
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 3-356
Cow position: chr19:20635300-20634950 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 225
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 49, 53

Conread position: 3-415
Cow position: chr19:14948469-14948058 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 260
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 70, 0

Conread position: 3-440
Cow position: chr19:20678368-20678802 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 276
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 237, 226

Conread position: 3-440
Cow position: chr19:23649971-23650408 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 144

Conread position: 3-443
Cow position: chr19:23597278-23597718 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 369, 386

Conread position: 3-445
Cow position: chr19:23649551-23649993 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-451
Cow position: chr19:20635468-20635020 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-454
Cow position: chr19:14940573-14941024 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 369, 376

Conread position: 3-454
Cow position: chr19:23613681-23614132 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 152

Conread position: 3-455
Cow position: chr19:14940237-14940689 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-455
Cow position: chr19:14940321-14940773 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-455
Cow position: chr19:14959572-14959129 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 227

Conread position: 3-455
Cow position: chr19:20635552-20635100 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 305

Conread position: 3-455
Cow position: chr19:20677444-20677896 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 279
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 323, 300

Conread position: 3-455
Cow position: chr19:20678032-20678484 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 118

Conread position: 3-455
Cow position: chr19:23597194-23597646 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-455
Cow position: chr19:23613513-23613965 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 398, 394

Conread position: 3-455
Cow position: chr19:23614017-23614469 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 152

Conread position: 3-455
Cow position: chr19:23614437-23614889 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 311

Conread position: 3-455
Cow position: chr19:23614521-23614973 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 300

Conread position: 3-455
Cow position: chr19:23649467-23649919 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 374

Conread position: 3-455
Cow position: chr19:23649635-23650087 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 367

Conread position: 3-455
Cow position: chr19:23649803-23650255 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 118

Conread position: 3-455
Cow position: chr19:43570227-43569775 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 407

Conread position: 4-344
Cow position: chr19:14959160-14958826 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 237
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 321, 42

Conread position: 4-455
Cow position: chr19:14960477-14960028 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 0

Conread position: 6-445
Cow position: chr19:43570140-43569703 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 398, 403

Conread position: 6-450
Cow position: chr19:23649890-23650334 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-454
Cow position: chr19:14959807-14959373 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 286
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 375, 95

Conread position: 6-455
Cow position: chr19:14939988-14940437 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-455
Cow position: chr19:14959401-14958967 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 297
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 67, 44

Conread position: 6-455
Cow position: chr19:20677699-20678148 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 280
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 129, 135

Conread position: 6-455
Cow position: chr19:23597113-23597562 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 284

Conread position: 6-455
Cow position: chr19:23613768-23614217 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-455
Cow position: chr19:23649302-23649751 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 132

Conread position: 9-351
Cow position: chr19:14959649-14959308 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 235
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 40, 15

Conread position: 9-427
Cow position: chr19:14959239-14958827 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 9-445
Cow position: chr19:20678122-20678558 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 273
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 64, 43

Conread position: 9-454
Cow position: chr19:23649389-23649834 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-455
Cow position: chr19:20677534-20677980 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 280
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 9-455
Cow position: chr19:23613351-23613797 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 400, 394

Conread position: 9-455
Cow position: chr19:23613435-23613881 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 112

Conread position: 9-455
Cow position: chr19:23613603-23614049 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-455
Cow position: chr19:14960387-14959944 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 111

Conread position: 12-442
Cow position: chr19:14915967-14916395 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 275
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 37, 129

Conread position: 17-455
Cow position: chr19:23597040-23597478 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-455
Cow position: chr19:20678215-20678652 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 388, 370

Conread position: 29-435
Cow position: chr19:14959712-14959308 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 28

Conread position: 38-455
Cow position: chr19:23596812-23597226 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 260
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 223, 0

Conread position: 62-455
Cow position: chr19:20635745-20635352 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 241
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 46

Conread position: 67-455
Cow position: chr19:43570247-43569859 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 71-455
Cow position: chr19:14948485-14948102 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 245
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 82, 0

Conread position: 75-455
Cow position: chr19:14959257-14958883 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 0

Conread position: 77-446
Cow position: chr19:23649289-23649658 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 232
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 49, 63

Conread position: 77-455
Cow position: chr19:20635646-20635268 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 242
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 344, 334

Conread position: 164-455
Cow position: chr19:23649292-23649583 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 178
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 176-455
Cow position: chr19:23613350-23613629 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 185
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.